| mature miRNA: AGCTACAGTGTCTCTCCACA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|3858159|gb|AI166875.1|AI166875 xylem.est.664 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence AGCTACAGTGTCTCTCCACA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTTTTTTTGAAATCAATCCAAATAGCATTTCATTCACACTTGTTCGGCAAGAGTCACATTCGTTCAGCAAGAGAGCGACATTTCTAAACATCTTAATCAAACTTTAACTTAGCAGAAGGCATTTTTGCTCAGGGATTTGTCCTGAAATGGCGGCGCTCGTTTGGCTGTGCTTCTGTCTTTGGGGGGACATTGTAGCCGTGAAGAATTTCATGGATTTTGGAATATGCCAACACCTGTGAAGGGTCAGCCCCACCACTGCTTTGTGATGCACGCGAACTCTCCTGCAGCTTAATCTTCTCAAACAGATACTGCTTCTCTGCCTCAGCTTCACTTAAACGAAGCTTGAGGTAACTGCTAGCATATTCTTCCTCTGATTTGTCTGTCTTAGCAAGCCCAATTCTCTGCAGCCTCTCAGCCTCTCGCTTTGCCTCGTTGGCCTTGAGCTGGAACATGTCAGCCTCTGCCTGCTTAAGCCTCACAATTCTCTCAAGCTCTTCAACCTGTAGCTTCTTTTTTTGCCTGGCTAGCTTTAGTTCTGCCACTTCCTTGGCCTTCTCCTTCAGCTCACGGTCACATGCCTCGAGGG | |||||||||
gi|24063439|gb|BU871915.1|BU871915 Q036B04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence AGCTACAGTGTCTCTCCACA EST sequence (targeted fragment marked with yellow): ACGCGCGCCATGAGTCTTGTTGATCATCTGTGGGACGACACAGTAGCTGGTCCTCTTCCGGACAACGGCCTTGGGAAGCTCCGGAAGAAGACCGAGCTACGGTCTCCGGCCAAACTCTGGCCAGGAATCTGATGGTAGCGGTGGTAGCGTGATGAGGCCGTACGGTGGCGAAGCGACGACGGAGGAGACGAAGAAAGTGACAAGGAGTATCATGATAGTAAGACCACCGGGATACCAGAGTAATGGTTCCTCTTCTACACCCCCGGCGTCACCAGCTGGTTCTACTCCTCCGGTGTCTCCTTTCTCTGGAAGCAGAGAATCCTTTCGGGTTCGAAGAAGGTCTACGTCGGACGCATACGAGAAGACAA | |||||||||
gi|52384537|gb|CV230734.1|CV230734 WS0192.B21_H13 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0192_H13 3', mRNA sequence AGCTACAGTGTCTCTCCACA EST sequence (targeted fragment marked with yellow): GGGATACACTCTAGGGGGGCACTAATCAAATTAAACACTTCTTAACCATGAGTTAGGATGATAATAAAAAATCTTCTTGATATGTCTTTGATATTTCAGTGCATTAGATTATCCATTTAATTTCCGTATCTGACAGATGCATGTTCACCTTTTGCAGGTTCACTGGTTCTACATGGGCTTCCCTTTTCTATGGTTATGGGAATATTTTATGCATGTACTATTTCAACAGCGTTAGTGGGAAGTTTCTTTTGGCAGCAACAGCTGGTTTGGTTTCATGGATAGGTATGGCTCTATGGAGAGACACTGTAGTTTATGGATACAGCTCACCTCTTAGGTCTTTGAAAGAGTTGATTTTTGGCTCTTGAATTCCTAAGTCATGCTGCAATGGCGCTTAAATAAGATGAAGCAACCTGATCTAGCATCTTGACTGTTTTAAGTTTTATGAAAACTCATCTTCACCCATCACTGTTGAGATGCCGGTGCTCAATTTAGATTACTACTCCAGCCCTTGGTTTAAGTTTGCTACTCGTCTGGCTATGGAAATTTGAACTGGAGAGGATGCTGTATGGGAATCACATTCGTTTGCACTTTGAGATAAAAATTAGGATGGGTATGTTGTAATTGATATTGTAATAATACAAGATTATTGGTTGACCAAAAAAAAAAAAAAAAAA | |||||||||