miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGCTCAGGAGGGATAGCGCC
species: Gossypium hirsutum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|109889196|gb|DW518164.1|DW518164 GH_TMIRS_218_D12_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
||||||||||||||||||||
TCGAGTCCTCCCTATCGCGG

EST sequence (targeted fragment marked with yellow):
ATTCAATAATATTATTATTATTATGAATCGGAATATCATGTCAACCCCCATTAGTTGGAGCATGGTAAAGGCTAGTAAAAGCAAAAGGAGACCTGCAGGCTGCACCTAAGCACATGCCATACTCTTCACTCTCATTCAATGTCCACTGCTACAATAAGACAAATTACATCCTTTCAATAATTTCATGCACATAATAGTGTTTATAACTTAATTTATAACAGCGACAGTGCCTCTCCATAACACCAAATACAAGCAGAAGCATCACTTCCGCATATGCATTAGAGGACCAAACTAATTATGTCCACAAATATAAGGCCCCTTATTTGTTTGTTTCTCCAATTTATACGACAAAGGGGAATTTTCTTCAACTGTTTCTCCCCCTTTCTAGTGGAATCGTGGAGCCTGCAAAACTTACCCAACACCTGTAATTGTATTTTCTTTAAAAATCCCAGAATTGGGAAAGAGAAAACCAACCAAAACCCTTTTGATTTCAACAATATATGTTAAAACACACACACACAAACGAGGAAATATTTATAAAAAATGGAGGAGAAAAATGCAGTAACGGTACGTACCCACAAGATTTTTGTGTGTTCCTTTTTCGGCTAACGGAGCGACAGCAAGCAAGAAGAACCGATGAAACTCAGGATGGATAGCGCTATATGAGGATCAAATAACATACATGCATGAAAGCTTGAAAGATGGATCATCCATGGCGCTATCCCTCCTGAGCTTAACAGATTCTTCCATACTGGAATTAAATAAAAAAGAGGAGAGAAAAAAAAACCCCAATGTTGGTG



gi|164365173|gb|EV493501.1|EV493501 253F08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
|.|||||.|||.|| ||||
TTGAGTCTTCCTTAAGGCGG

EST sequence (targeted fragment marked with yellow):
GGCAAGTATTGCAGCACTTGAATCATTAGATCTGTCATCAAACAAGCTTGGTGGCGGAATTCCTTCTGAGTTGACCAAACTAACATTTCTGGCAGTGTTGAACTTATCGCAAAACAATTTTGTCGGGCCTATTCCGGTTGGGAATCAATTCAATACTTTTGATAATGGTTCGTATTCTGGAAACTTGGATTTGTGCGGCTTCCCGCTGTCAAAGAAATGTGGCAACAACGATGAACCAAAGTCACCAACATCAATGGTTGTGGAAGGTGAATGTTCTGCAATACCCTTTATTTGGAAACTCGTGATGATGGGCTATAGCTGTGGAGTAGTGTTGGGACTGAGTACGGGGTACTTTGTTTTCACAACTGGAAGGCCATGGTGGTTCGTTAGAATGGTCGAAAGAGATTGGCAGAGGAATTTTACAAGATGGATTCGCAAGATTGGAAGAAAAAGAAACTAGCACTTCATCTAAATTGAATAGTGGAATTCGAGCTGAATTGTATGGAAAATGCCTCCCTGCTGCCATAAGATTTGGCTCGATGCCTATGTTCTAGCCTTCTGTGTACATTA



gi|109874870|gb|DW503844.1|DW503844 GH_TMIRS_078_C10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .|
TCGAGTCCTCCCTATC-TGT

EST sequence (targeted fragment marked with yellow):
CTCCATTGCCACTTGTTCATCTTAATTTGGTGCTATCCTACCTGAGCTTCAAATATAAAATATTCATCTTCTTGACCTTGTAAGACCTTTTCTTGACCTTGTAAGACCCAGTCCAGTATTTCCAACTCTTCTTCTCCTTCCTTGTCTATCCCTCCTGAGCTGTTTGTAACTTTGAAATGGTCAAATCATATGCCAATTCCTTTTCTAGGTTTTTCTGAATATTCTTTTTGCGTATCTTTGGGAATGAAG



gi|109874652|gb|DW503626.1|DW503626 GH_TMIRS_076_A11_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .|
TCGAGTCCTCCCTATC-TGT

EST sequence (targeted fragment marked with yellow):
ATTCTCCATTTTCTCTCCCTCTCAAAAACCAAAGCTCAAACCCTCAGGCTTCTTCAAGGTTGATTGATTTCCAGGTTACAAGCTATCATCATCATCATGGACATATTCTTCAATAAACCTAATACCATCATGGTTATTGACAGCATATGCTTCAAAAGAGCAATCTCCACCATGGATGTTGTTGAACAATACTTACCAAGCTTCTTTACAACAATTGCTTGTTGACCTCTCTCTTGGTGCTATCCGACCTGAGCTTATTTTTAACAATCCCCCCCCAAAAAAAAATACCCTTTTTTTATTTCACCATGGTTTCCTCTTCTTGACCTTGTAAGGCCTTTTCTTGACCTTGTAAGACCCCTACCATCACCTACTACACTCATCACCACTATCTTAAACCATTTCTTATCAGAATTTTCCTTGAAAGAACTAAACAATTAGTACTCACTGTTCCCACCTAACTCATCATGTTCTTCCCTGTCTATCCCTCCTGAGCTACCATGTCACAATAAAAAACTAGAATATTATAACCTTACAAAAATGGCAATGGCATCATGCAGTCAAAGGAGCTTCATGGGTTTTAGTTTTACTTCCATTTTACTGAAACGATTGTTGGGCTATAAGCAGTCATTTCAGAAAAAAAAATTTGAATTCTAGCTTGTATTCTTATGTATGTGCCTGCAGGAAAAAAATATTGAAACTCATGCAGGAGCTGTCAGACTGTTTGACATTTTGTTTACA



gi|78345818|gb|DT566092.1|DT566092 EST1076732 GH_TMO Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
|||||||||||||| . ||
TCGAGTCCTCCCTAGTAGGG

EST sequence (targeted fragment marked with yellow):
GGCGAGTTTAGGTGCATTGTTCAAGCTAACTACACTCGATTTAAGCAAGCAGAATCTTTCGGGTGAATTGCCATTTGAGCTTTCGGGTTTACCTAATCTACAAGTCATTGCGTTACAAGAGAATATTTTATCCGGCGATGTTCCCGAAGGGCTTAGTAGTTTGATGAGTTTGCGATACGTGAATCTAAGTTCAAATTTATTTTCCGGCCATATCCCGGAAACTTTCAGATTTCTGCATTCGTTAGCTGTGCTTTCATTGTCTAATAATCGCATAACCGGGATGATCCCTCCTGAGCTTGGGAACTGCACTGAGCTTGAAGTTCTTGAGCTTGGATCGAATTCTTTGACAGGTCATATTCCTGCCGATCTATCTGGCCTTTTGAGGCTTAATGTGCTCGATTTGGGTGGTAACAACTTAACCGGAGAAATCCCGGAGGAAATCTTCAAGTGCTCATCGTTGACCAGTTTGTTACTCAATGGTAATCGGCTTTCTGGGAGCATACCGGATTCATTGTCCGAGTTATCGAATCTTACAATGCTGGATCTTTCTTATAATAGCTTGAGTGGAAACATTCCGGCTAATCTCAGTCTTATACCCGGGTTGGTCTACTTCAATGTCTCGAGTAATGACCTAACCGGGGAAATTCCGGTTAGTCTCGGTTCTAGATTTAACAATCCATCAACGTTTGCGGGTAATCAAGACTTATGCGGAAAGCCATTGGATCGGAAATGCGAGGATGTAGCGGTGAAGAACAGAAGGAAAAGATTGATTCTTTTGATTGTAGCAGTATCTTGCGCTGCAAGTCTTGTGTCATTGTGTTGTTGCTTTTACGTTTTTAGTCTTTTGAGATGGCGGAAGAAGCTCAAGGAAGCTGCCGGGGAGA



gi|109885862|gb|DW514832.1|DW514832 GH_TMIRS_185_G12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||.|| ||
TCGAGTCCTCCCTGTCCCGA

EST sequence (targeted fragment marked with yellow):
GGCCAAGAGATTCAATGTTCTTGTTGCTACAGATGTTGCAGGGCGTGGGATTGATATTCCTGATGTGGCTAACGTCATTAACTATGATATGGCGAATAGTATTGAAATGTACACACATCATATTGGAAGAACAGAACGTGCAGGCAAAACTGGTGTGGCCACAACATTTTTGACTCTCCATGACACTGATGTCTTCTTTGATCTTAAGCGGATGCTTGTTCAAAGTGGCAGCCCTGTCCCTCCTGAGCTG



gi|109890518|gb|DW519482.1|DW519482 GH_TMIRS_231_D02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||.|| ||
TCGAGTCCTCCCTGTCCCGA

EST sequence (targeted fragment marked with yellow):
AGAGCAGAGGGAAATTAGCCTTGACGGTTTTAGGGCCAAGAGATTCAATGTTCTTGTTGCTACAGACGTTGCAGGGCGTGGGATTGATATTCCTGATGTGGCTAACGTCATTAACTATGATATGGCGAATAGTATTGAAATGTACACACATCATATTGGAAGAACAGAACGTGCAGGCAAAACTGGTGTGGCCACAACATTTTTGACTCTCCATGACACTGATGTCTTCTTTGACCTTAAGCGGATGCTTGTTCAAAGTGGCAGCCCTGTCCCTCCTGAGCTGGCAAAGCATGACGCTTCTAAGTTTAAACCAGGAACAATTCCTGATAGACCTCCTAGACGCAATGACACTGTTTTTGCTCATTGAGAGTTTTTATTGACGTGAAATTCAAGTCCCCAATTTGCTTAGATGTAGTATGGTATTGTAGTTGCCAATATATTGATCATTGCTGCTCACAAGTAATTGCACTGGCATTCCAATTGTAAAATTTGGACTTGGTATTTGTCAACTTTACTTTATAGTGCTGCAGCAGTACTTGGTAATAGGAAGATGTTGAACTTTTTGAAATATTG



gi|164333334|gb|ES843623.1|ES843623 UFL_101_94 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .|
TCGAGTCCTCCCTATC-TGT

EST sequence (targeted fragment marked with yellow):
TCAAAGAAGAAACCAACCCACAATCTTCCACAAGGTCATCTAGGGCTGATGCATGGCAAATCTTATATGAAAATGGCTTCTTCCTCATCATAATCTGGTGCTATCCTACCTGAGCTTTCCTTCGTTTCTTTTCTTTTTTCTTTTTACTTATTTAATTATATAAATAAATAAATAATATCTTCTTGACCTTGTAAGACCTTTTGTTGGGCATGTAAAAGGCATTCCAGTATTTGGTGTTATAGTAGTGGTTGGGTATTGTTCTACACCATTGCCACCCATCTCTTCTTCTCCTTCCTTGTCTATCCCTCCTGAGCTGAACTTTTTAACCTTTGTAATAACACTACTGCTGTTCTTTTTCATTTATTAAGAGTAAAAGCTTTCACTTTCTTATTTGGGTTGAGGCTATGAAAGCCACCATAAAAAAAAAAAAAAAAAAA



gi|164352337|gb|ES830643.1|ES830643 UFL_248_45 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
||||| |||||.|||| .||
TCGAGGCCTCCTTATCCTGG

EST sequence (targeted fragment marked with yellow):
CGGCACGAAGGTAATCCAGAAGAGGCAACATGTTACAAAGATGTAAGTATATGATCTGCCAACTTTTCCAAGTTCTTTAACCAGTTTTGATCCCATTTAAATGGTGGATATCTACGCAATTTGATGCCTTTTTTCATAGTCATGTCTCTCGTTATGTTGCAGAAACATAACCGGTTCATCTTTGAAGGGATTTCTTGCACCAGAAATAGGCCAAATTACCAACTTGCTAGAACTAACTTTACATGACAACAATCTGATTGGAACAATACCTAAAGAACTAGGCTTTTTGAAGTCCCTCAAAGTGTTGGATTTGGGGATGAATCAACTGACTGGTCCTATTCCTCCGGAGCTAGGGAATTTGTCCGGTGTGACGAAGCTAAACCTTCAGTCAAATCGGTTAACAGGGAGCCTGCCTGCTGAACTTGGGAATTTAGAGAATCTTCAGGAACTTATCCTCGATCGAAATAAGCTTCAAGGAACTGTTCCTGCTGCTAGCAATTCAGCATTTTCAGCCAAGATGCATGGAATGTATGCCTCTCATTCAAACTTAACTGGACTTTGTCGCTCATCTCGGTTAANAGTGGTGGATGTCTCCTACAATTATTTGGTTGGAAGCATACCTAAGTGTTTGACAAACCTTCCCAACCGCAGCTTTCAAGGGAACTGTCTTCGGGACAAAGATGTTAAACAGCGTCCTACCACAAATGTGGT



gi|109882368|gb|DW511338.1|DW511338 GH_TMIRS_152_D03_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .|
TCGAGTCCTCCCTATC-TGT

EST sequence (targeted fragment marked with yellow):
ATTCTCCATTTTCTCTCCCTCTCAAAAACCAAAGCTCAAACCCTCAGGCTTCTTCAAGGTTGATTGATTACCAGGTTACAAGCTGGGACATATTCTTCAATAAACCTAATACCATCATGGTTATTGACAGCATATGCTTCAAAAGAGCAATCTCCACCATGGATGTTGTTGAACAATACTTACCAAGCTTCTTTACAACAATGGCTTGTTGACCTCTGTCTTGGTGCTATCCCACCTGAGCTTATTTTTAACAATGAACTACCCTTTTTTTTTTATTTCACCATGGTTTCCTCTTCTTGACCTTGTAAGGCCTTTTCTTGACCTTGTAAGACCCCTACCATCACCTACTACACTCATCACCAATATCTTAAACCATTTCTTATCAGAATTTTCCTTGAAAGAACTAAACAATTAGTACCCACTGTTCCCACCTAACTCATCATCTCCTTCCCTGTCTATCCCTCCTGAGCTACCATGTCACAATAAAAAACTAGAATATTATTTACCTTACAAAAATGGCAATGGCATCATGCAGTCAAAGGAGCTTCATGGGTTTTAGTTTTACTTCCATTTTAGTGAAATGATTGTTGGGCTATAAGCAGTCATTTCAGAAAAAAAACCATTGAATTCTAGTTTGTATTCTTATGTATGTGCCTGCAGGAAAAAAAATATTGAAACTCATGCAGGAGCTGTCAGACTGTTTGACATTTTGTTTA



gi|54122620|gb|CO498129.1|CO498129 G.h.fbr-sw07519 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
||||| |||||.|||| .||
TCGAGACCTCCTTATCCTGG

EST sequence (targeted fragment marked with yellow):
GCTTAGCGTGGTCGCGGCCGAGGTACATTTATTTCTTGCTTCTGTTTCTTGGCTATGGAGTTTCTTTAGCCACTTGCAGCTTTTTCCCTACTAATGAAGTTTGGGCTCTTACAACATTTAAAGAAGCTATATATGAAGACCCACATCTGGTTTTGTCAAACTGGAATGCTTTGGATGCTGATCCATGTAACTGGTTTGGGATTACTTGTAATCCAGAGAGGCAACATGTTACAAAGATAAACATAACCGGTTCATCTTTGAAGGGATTTCTTGCACCAGAAATAGGCCAAATTACCAACTTGCTAAAACTAACTTTACATGACATCTATCTGATTGGAACAATACCTAAAGAACTAGGCTTTTTGAAGTCCCTCAAAGTATTGGATTTGGGGATGAATCAACTGACTGGTCCTATTCCTCCAGAGCTAGGGAATTTGTCCGGTGTGACAAAGCTAAACCTTCAGTCAAATCGGTTAACAGGGAGCCTGCCGGCTGAACTTGGGAATTTAGAGAATCTTCAAGAACTTCTCCTCGATCGAAATAAGCTTCAAGGAACTGTTCCTGCTGCTAGCAATTCAGCATTTTCAGCCAAGATGCATGGAATGTATGCCTCTCGTTCAAACTTAACTGGACTTTGTCGCTCATCTCGGTTAAAAGTGGTGGATGTCTCCTACAATTATTTGGTTGGAAGCA



gi|78323062|gb|DT543336.1|DT543336 EST1053976 GH_TMO Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
|.|||||||||.| | |.||
TTGAGTCCTCCTTCTGGTGG

EST sequence (targeted fragment marked with yellow):
CTCAGATCCGGCATGATCTTCATGCCGTTCTAAAAGGTGGATCCACAGTTAAAGAGTATGTTTCAAAGATTAAAAATCTTTGTGTGCTGCTTGAGGCTTCGAGATCTGATGTTTCTGAGGCAGAGAAAGTGGAGGTTCTCCTCGGTGGTCTTCCTCCTGAGTTTGATTCAGTTTTCATGTTAGTCTCGATCTCGTCGGAGGCCTTGACGTTTCAAAAGCTAGTGGATGTTTTAATGGCGTTTGAGAATCGAAAAACGAGGGCCGTGCGTGATGTTCCTATGGTTTCGCATGTCGTCGAAACTCCTGCCGATTTTGAGTCGCGAGGTGTACGTGGTGAGAGATCGTCGGCTGGAGTTCGTGGTGGTCGTGGTTTTCGGACGAAAGTTCAGTGCCAGATCTGTAATCGTCTGGGACATGTTGTACAGCGGTGCTACTATAGATTTGACAAAGATTATGGTGGTTCTGATGCGGCTATTGTGGCCGGTGGTAGAGCCGTTCGTGCGCGTGGTTATCAGTCAATGCCACGTACTGAAGGTGGGCAGTGGGTATGGCAGAACCAACATACTGTACGTGATTATCCACAGCCCAATTGGGTTGGTCTGTCAGCTAGATTGACTGGTGCATATCATGCACCCCGTATGTCAGTGCCTCGTGCCTATGCGCCTAGGCCCTATGCTCGTCCTAGCAGGCCTGTTATGGGTCAAGAAGCCCAGTTTTATACTGCTGCTCCTAGGCAGAATGTGACAGGTCCCATGCTTGGCCCAATCGATCAGCAAAATAGGTTGACTCATGGTACTCAGTACGTGTCCCAACAGTCTCCTGGGTCACCTGTAGCGAATTTTGTGGGTGTTCCGACTGTTCCACCTGACGCTCCGTGGCGTACCAAACCACATGCTCGAGTTTTTGATGTTGATAATTCTCAGAATATTGGTTTGCCTCGTATTCCAGATTTTTGTG



gi|109891654|gb|DW520617.1|DW520617 GH_TMIRS_242_D01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||.|| ||
TCGAGTCCTCCCTGTCCCGA

EST sequence (targeted fragment marked with yellow):
GGCAGAAGGAAATTAGCCTTGACGGTTTTAGGGCCAAGAGATTCAATGTTCTTGTTGCTACAGATGTTGCAGGGCGTGAGATTGATATTCCTGATGTGGCTAACGTCATTAACTATGATATGCCGAATAGTATTGAAATGTACACACATTGTATTAGAAGAACAGGACGTGCAGGCAAAACTGGTCTGGCCACAACATTTTTGACTCTCCATGACACTGATGTCTTCTTTGATCATAAGCAGATGCTTGTTCAAAGTGGCAGCCCTGTCCCTCCTGAGCTGGCAAAGCATGAAGCTTCTAAGTTTAAACCAGGAACAATTCCTGATAGACCTCCTAGGCGCAATGACACTGTTTTTGCTCACTGAGAGTTTTTATTGACATGTGAAAATTCAAGCCCCCAATTTGCTTAGCTGTAGTATGGTATTGTAGTTGCCAATATATTGATCATTGCTGCTCACAAGTAATTGCACTGGCATTCCAATTGTAAAATTTGAACTTGGTATTTGTCAACTTTACTTTAAAGTGCTGCAGCAGTACTTGGTAATAGGAAGATGTTGAACTTTTTGAAATATTCTT



gi|109873684|gb|DW502659.1|DW502659 GH_TMIRS_068_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .
TCGAGTCCTCCCTATCTTCT

EST sequence (targeted fragment marked with yellow):
ATCTTTCATGGCACTGTTTCCACTTCCTCCATAGCCATTTTCTACTGACCAGTCCAAAAAGTCTTAACCCTTCTTCATTGGCTTCCCGAGCCATAAGCTGCTATCAATGGCTCAACGACGCCCATTGCCACCCTTGATCATGGACCTGACCATCGCAGTTCGTCCACCAGGTCATCAACATCCTAGCTCAAGAAAAGTAGATTTCATGTTTTGAAGTAGATGGCAATATCTCTCCTGAGCTTATTCTTCTTATATCTTTTCTTCTATTCTCGAAATTCTTTGATGATTATTCGAGTTTTCTTGACCTTGCAAGTCCGTAAGCAAGGTAAAATTGTTCTTGACCACTTTAAGAATTTTCAAGAGACTCTGAGCATGAAATTTTCATCAAAAGTTCGAGAAAGTTCTTATCTATCTTCTATCCCTCCTGAGCTGTATCTTCTCTTGGTCTCATTTCTCTTTAACCTAGCTAGGGTTATCTTTTATCATCTGTTTCGGTTTTAACTTAAAGTATTTCTGAATGCAATTGGATTATCCGG



gi|109882368|gb|DW511338.1|DW511338 GH_TMIRS_152_D03_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGCTCAGGAGGGATAGCGCC
|||||||| ||||||||.||
TCGAGTCCACCCTATCGTGG

EST sequence (targeted fragment marked with yellow):
ATTCTCCATTTTCTCTCCCTCTCAAAAACCAAAGCTCAAACCCTCAGGCTTCTTCAAGGTTGATTGATTACCAGGTTACAAGCTGGGACATATTCTTCAATAAACCTAATACCATCATGGTTATTGACAGCATATGCTTCAAAAGAGCAATCTCCACCATGGATGTTGTTGAACAATACTTACCAAGCTTCTTTACAACAATGGCTTGTTGACCTCTGTCTTGGTGCTATCCCACCTGAGCTTATTTTTAACAATGAACTACCCTTTTTTTTTTATTTCACCATGGTTTCCTCTTCTTGACCTTGTAAGGCCTTTTCTTGACCTTGTAAGACCCCTACCATCACCTACTACACTCATCACCAATATCTTAAACCATTTCTTATCAGAATTTTCCTTGAAAGAACTAAACAATTAGTACCCACTGTTCCCACCTAACTCATCATCTCCTTCCCTGTCTATCCCTCCTGAGCTACCATGTCACAATAAAAAACTAGAATATTATTTACCTTACAAAAATGGCAATGGCATCATGCAGTCAAAGGAGCTTCATGGGTTTTAGTTTTACTTCCATTTTAGTGAAATGATTGTTGGGCTATAAGCAGTCATTTCAGAAAAAAAACCATTGAATTCTAGTTTGTATTCTTATGTATGTGCCTGCAGGAAAAAAAATATTGAAACTCATGCAGGAGCTGTCAGACTGTTTGACATTTTGTTTA



gi|164277317|gb|ES832249.1|ES832249 UFL_447_44 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .|
TCGAGTCCTCCCTATC-TGT

EST sequence (targeted fragment marked with yellow):
GGCACGAGGTACCCACTGTTCCCACCTAACTCATCATCTCCTTCCCTGTCTATCCCTCCTGAGCTACCATGTCACAATAAAAAAACTAGAATATTATTTACCTTACAAAAATGGCAATGGCATCATGCAGTCAAAGGAGCTTCATGGGTTTTAGTTTTACTTCCATTTTAGTGAAATGATTGTTGGGCTATAAGCAGTCATTTCAGAAAAAAAAACCATTGAATTCTAGTTTGTATTCTTATGTATGTGCCTGCAGGAAAAAAAATATTGAAACTCATGCAGGAGCTGTCAGACTGTTTGACATTTTGTTTATCATTAAATGAGATTTTTTTTTGATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAA



gi|164318918|gb|ES828745.1|ES828745 UFL_317_26 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGCTCAGGAGGGATAGCGCC
|||||||||||||||| .|
TCGAGTCCTCCCTATC-TGT

EST sequence (targeted fragment marked with yellow):
GGCACGAGCAAAAACAAAACCATGGGAGGAAAAAGAAAAGAGGAAGCTTTCAAAGAAGAAACCAACCCACAATCTTCCACAAGGTATGGTAAACTAAAAAGTTTTCCGATCACAACTTAAATTTCATCTCGTATTATTATCTTCTAATTTAATCAATTCAGGTTCAGGTTCGAGGATTTAGGATTTAGGGTTAGTTTAAATTAAAACTAAATAAATTACATTTTTTTTATTTATTTTCATCTAATTTTTTTTCTCTTTTTTTTTTCAGGTCATCTAGGGCTGATGCATGGCAAATCTTATATGAAAATGGCTTCTTCTTCGTCATAATCTGGTGCTATCCTACCTGAGCTTGTCTTCTTTCTTTCTTTCTTTTTTTACTTATTTAATTATATATAAATAAATAATATCTTCTTGACCTTGTAAGACCTTTTGTTGGGCATGTAAAAGGCAGTCCAGTATTTGGTGTTATAGTAGTGGTTGGGCATTGTTCTACACCATTGCCACCCATCTCTTCTTCTCCCTCCTTGTCTATCCCTCCTGAGCTGAACTTTTTCACCTTTGTAATAACACTTCTGCTGTTCTTTTTCATTTATTAAAAAAAAAAAAAAAAAA