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mature miRNA: AGCTCTGATACCATGTTAGATT
species: Picea abies
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90029161|gb|AM169678.1|AM169678 AM169678 K00001 Picea abies cDNA clone K0000100014F10F1, mRNA sequence

AGCTCTGATACCATGTTAGATT
|||||||||||||||| ||.
CCGAGACTATGGTACAAGCTGT

EST sequence (targeted fragment marked with yellow):
CTATTGTAAAATCTCTCTGTAATCTTTTTCTTTGCATTAATAAACTGCTCCAAGTGGCCGCGTTGGCTGGGGTCGTGGATGTTTCCCCGTAGGGGTTTTACCACGTGAAAACATCGGTGTGTTGATCTTTGATCTGGTTATGTGAGTGGTTACTGAAGGTGTTCGTCCTCTGTTGGAATACCTGTGTTGTCGAACATGGTATCAGAGCCTGTTTGAAGACCCGCTCCTGTTGTAGATCGAGATCGTGAAGCCGAGTTGCCTCATATCCATTTTCTGGCATTTCTGTACATTTCTGGGCTGAAAGGACTATTCCATTGCGTCCGGAGCAGGCTTTTCATTCAGGAACACTTTTCGTTTCACTCGAAAAGGTTTCCGTTTGCCCAAGATACGGCCATTACAGTCAGATTCCGGAGGTATAAAGTCTGAATACGCATTTTAAATTTTTGCAAAGTTTGATTTTATTTCGGTTTGTGTTTTTTTTTTCC