| mature miRNA: AGCTGCCGACTGGTTTCCAGTCGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88491882|gb|CI429154.1|CI429154 CI429154 Oryza sativa (japonica cultivar-group) 4 days after transferring callus Oryza sativa AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): GTTGCAATTCAGGTAATTACTATTAATAGGATTATGAACTTCACTGATGCCACTTAAAAACCGACATGGCTATTGTTATCGTCTGTCTGTCGATGAAACCAGCAGTCTGGTTCGATGCAGAATGTATTCCAGTACAGTATCTGGCATGATAATCGACAATTTAAGGACACCGGGTTCTTGTTTCAAAGATAGCATATGAGACGTGCCCCTAGGCCTANATCTTCTGAATGATGACAGAGTTCGCCAGAACAGCTTGCTCGACGGTCTGTGCTGGATCAGCCAGCTGCTTCGGCGGGAAACCAGTCTGCAGCTGATAGGGCCTTGTACCCCCAGGCCGAGAGGCGTCGATGAAAGAACTGATGTCGCCCACNGTGTGGTGCATGTTGAAACGGGCAACCATGCGAGTGCCATCGGCCAGCCTTAGCTGTATGGATGTAAA | |||||||||
gi|88531724|gb|CI460222.1|CI460222 CI460222 Oryza sativa (japonica cultivar-group) 3rd week immature panicle Oryza sativa Japoni AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): GCAATTCAGGTAATTACTATTAATAGGATTATGAACTTCACTGATGCCACTTAAAAACCGACATGGCTATTGTTATCGTCTGTCTGTCGATGAAACCAGCAGTCTGGTTCGATGCACAATGTATTCCAGTACAGTATCTGGCATGATAATCGACAATTTAAGGACACCGGGTTCTTGTTTCAAAGATAGCATATGAGACGTGCCCCTAGGCCTACATCTTCTGAATGATGACAGAGTTCGCCAGACCAGCTTGCTCGACGGTCTGTGCTGGATCAGCCAGCTGCTTCGGCGGGAAACCAGTCTGCAGCTGATAGGGCCTTGTAGCCCCAGGCCGAGAGGCGTCGATGAAAGACCTGATGTCGCCCACCGTGTGGTGCATGTTGAAACGGGCAAACATGCGAGTGCCATCGGCCAGCCTTAGCTGTATGGATGTAAAT | |||||||||
gi|88502959|gb|CI430465.1|CI430465 CI430465 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): AATTACTATTAATAGGATTATGAACTTCACTGATGCCACTTAAAAACCGACATGGCTATTGTTATCGTCTGTCTGTCGATGAAACCAGCAGTCTGGTTCGATGCAGAATGTATTCCAGTACAGTATCTGGCATGATAATCGACAATTTAAGGACACCGGGTTCTTGTTTCAAAGATAGCATATGAGACGTGCCCCTAGGCCTACATCTTCTGAATGATGACAGAGTTCGCCAGACCAGCTTGCTCGACGGTCTGTGCTGGATCAGCCAGCCTGCTTCGGCGGGAAACCAGTCTGCAGCTGATAGGGCCTTGTAGCCCCAGGCCGAGAGGCGTCGATGAAAGACCTGATGTCGCCCACCGTGTGGTGCATGTTGAAACGGGCAACCATGCGAGTGCCATCGGCCAGCCT | |||||||||
gi|58691940|gb|CK080627.1|CK080627 79044rsicen_25033.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indi AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): CTGCAGGTGAAGTTTGACCCCCCAATCACTCAGCGCCGGTCTCCTCGCCAACACACCGTTCAGGGAGGTGGAGGGCCAACGATCAGATCAGATCCGCAACCTCAAACCTCCAATCCGACTGGACAGACAGGTTCTCGCAAGAGAAGGCTGGTGCTTAACGACGACGAAGGCGACGACGGCAACAAAACTGGGGACAAAGGCTTGCCTAATAAACTCCCAAAGCATACCACTCCCAGGAAAAAGCTGGCTGGCCGCCCAACGCCAAAGATTAGAACATCTTCCAGAAAACCATCCGACATAGATCCAACTGGAAAAGATCCTGATCCGGCTGTTACAGAACCAAGTTCGTCCAAAGATCCCGAGCCGACTGCCGAAAGCCAGCCGACTGGTGCCCATACTTCCGGTGACAAGGCCGATCCGAGTGACCAGCCCCCGACTGGAAACCAGTCGGCAGCAACTGAAACTACAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTCCCGATCAAGAAATCCCTGAAGTTGAAGCGCAGGCGACAAATTCTCAAGGACCAGAAGCTGGTAACGACTCGATGATTGGGTCTCCAGATAAAGAACAAGAATCACCTCACGCTCAGCCAGGAACATCC | |||||||||
gi|29659333|gb|CB655608.1|CB655608 OSJNEc09D05.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc09D05 5', mRNA sequence AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): CCGAAAACCAGTCGACTGCCGAAAGTCAGCCGACTGGCGCCCATGCTTCGGATGACAAGGCCAATCCGAGTGACCAGCCGCCGACTGGAAACCAGTCGGCAGCTACTGAAACTGCAACAACCCAAGAGCCCCCGACTGGAAACCAGTCGGATGTGGGTCTAAATCAAGAGATTCCTGAAGCTGAAGCACAGGCGACAACTTCTCAAGGACCAAAAGCTGGTAATGACTCGGTGATTGGGTCTCCGGATAAAGAGCAAAGATCACCTCACGCTCAGCTAGGCACATCCTCAGGTCCATTAGGTGGCGACGAAGAAGAAATTCTCCGCATAAAGGCAGCTGATGACTCTCGTCCTCCTATCTTACTCAAGTGGTGGGACGAGAACTCTCAAGTTTCCGGCATTGTCATAAATCGCCAAAAAGAAGATGAGGAAGTGTGCCAGCTGAAGAAAGTACTTGGAGAAGCTACTCGCATTGTGAATAGAATCCATCTTCGCAATGAGGCCAAGACTACAACCTTAGAAAAGCTGGTTCCACATTTGGGAACTCTTGAAGCCGTTAGGGAACAGCTACATGAGGCCAAGGAGCACGCAAAAAAGACGGAGAAAGAATTAAGGGAGCGAATTGCTCAGCTCCAGGATTCAAACTTCGAGCTGAGTGGTTCATCAAAAGCGCAAGCCACCAGAATGGCTCAGATGGAGAAACAAATTGAAGCCTTGAAAAGAGACAAGGTAGAACTGGCTGCGGAAAGGGACTCAGCCTTGAAGGAGGTTGAAGACCGTAAAATCAAATCTCAAGCTCAGTTTGATG | |||||||||
gi|40492375|gb|BX900240.1|BX900240 BX900240 Oryza sativa library (Han B) Oryza sativa cDNA clone y643a06p3, mRNA sequence AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTGCAATTCAGGTAATTACTATTAATAGGATTATGAACTTCACTGATGCCACTTAAAAACCGACATGGCTATCGTTATCGTCTGTCTGTCGATAAAACCAGCAGTCTGGTTCGATGCAGAATGTATTCCAGTACAGTATCTGGCATGATAATCGACAATTTAAGGACACCGGGTTCTTGTTTCAAAGATAGCATATGAGACGTGCCCCTAGGCCTACATCTTCTGAATGATGACAGAGTTCGCCAGACCAGCTTGCTCGACGGTCTGTGCTGGATCAGCCAGCTGCTTCGGCGGGAAACTAGTCTGCAGCTGATAGGGCCTTGTAGCCCCAGGCCGAAAGGCGTCGATGAAAGACCTGATGTCGCCCACCGAGTGGTGCATGTCGAAACGGGCAACCATGCGAGTGCCATCGGCCAGCCTTAGCTCTATGGATGTCA | |||||||||
gi|86518784|gb|CI158990.1|CI158990 CI158990 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft AGCTGCCGACTGGTTTCCAGTCGG EST sequence (targeted fragment marked with yellow): CGGCGAAACCGGTGTTTCCAAACTGCTGCTGCTGTTGCTGCTGGCCGTACCCCATGCCTGTGAATTGAGGCATGACTCCACCCGGCTGGAAGCCAGTCGGCTGCGGACGCAGCGCATCGTACTTGTCGCTCGTCTGCGGCGCCGCATTGGGGTCCTTGGCAAACGAACCGCTCTTCATCTGCTGGAAGATGTTGGACGCGTTGAACTTGTCCTTGTCCTGCTGCTGCTGCTGCTGTTGCTGCACCTGCTGCTGCGAGCCCATGCCAAAGCCCGTCTGCTGCGCCATCATCTGCTGCGGACTCTGCACGCTCGCCACGCCCTGCTGGGCAAACTGGTTGAATCCATGTCCACCCGCACCGGCAAACCCGGTTTGCTGAGGCTGCATCCCCATCTGACCCATCTGTCCCATTTGCCCCATTGAGGACATGGGAGACATGGCGCCGTTGTTGAAGCCCGTCATCTGCGGCTGCATACCCTGCATACCCTGCATACCCTGCATGCCTTGCATGCCCCAAGCGGTCTGCTGCGGCTGCAT | |||||||||