| mature miRNA: AGCTTATTCAAGAAGGCCAGA species: Lactuca serriola database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22446317|gb|BU011922.1|BU011922 QGJ17I20.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ17I20, mRNA sequence AGCTTATTCAAGAAGGCCAGA EST sequence (targeted fragment marked with yellow): AGAATTTGATCTCATACAACGCGATTGTAGATGGGTATGTTAAAAACACGGATTCTCACGAAGCTTTCAAGATGTTTAATCAAATTGAGGAGACAAAAGGTACAGAGGCGGTTGATTCTTTCACATTTGCCAATCTTTTAAGTGCAGCAGCCAGTCTCGGTGCTCTTGGAAAGGGTGAGGAGATGCATGCACGGTTAATAAAGTCGGGATTTGATTCGAACCAAAGGGTATGTAACGCTTTGATCTCAATGTATTCAAGATGTGGGGACATTGAAGCAGCTTCACGGGTTTTTAGCAAAATGGAAGAACGGAATGTCATATCTTGGACTTCAATTATTACCGGTTTTGCAAAACATGGTTTTGCAAGAAATGCCCTGGAGAAGTTTGATGAAATGGTTAAAGCAGGCGTGAAGCCAAATGAAGTCACTTATGTTTCTGTTTTATCGGCTTGTAGTCACGTAGGAATGGTTGATGAGGGTCTAAAACACTTTGATTCCATGTACCATGAGCACAAGATTAACCCAAAGATGGAACATTATGCGTGTGTGGTTGACTTATTGGGAAGATCCGGTTTTCTTGAAAAAGCTCTCGACTTTATCAAGTCAATGCCTTTCAAGGCTGATGCTCTTGTATGGAGAACATTACTTGCAGCCTGTCAAGTTCATGGTGATGCAAAACTTGGAAAATTAGCTGCAAAATGATTACAGAGCAGGATCCAGATGACCCATCT | |||||||||
gi|83915758|gb|DW117838.1|DW117838 CLRY6524.b1_H24.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRY6524, mRNA sequ AGCTTATTCAAGAAGGCCAGA EST sequence (targeted fragment marked with yellow): CGGGATTCCCCAATTTAACTTCTCTCACTCTCTCTCTGCTAATTCTAGTTTTGAATGGATTCCCTTTTCAATTTATGACCTAATTTCGTAATCCCATCCTGCATTTTTCTTAATAATGGCGGCTATTGCTTCAATTTCTTTCCACGGAGTCACTCAATCATCATCCGAAAGAAAAATCTGTCTCCCATCTCCATCTCCATCTCGCTCCTCTCTTTCAAATTTCGATTCGATTAGGGTTCGTACAACCTTCTCATTTCGTTCCATAAGCGTTCGTCCTTCGAAATCGAGTTCTCGCTTTGCAGTTCACTGCATGTCTACAGGATCAGAAGCACCACCAGTTTCCGAGACAAAATTAAAATTCCTCAAAGCTTACAAACGCCCAATTCCAAGCATCTACAACAGTGTGCTACAAGAACTAATTGTACAACAACATCTAATGCGATACAAAAAGACCTATAGATATGATCCAGTATTCGCTTTAGGCTTTGTTACTGTTTACGATCAACTCATGGAAGGATACCCAAGTGACGAAGATCGGGAGGCCATCTTCCAATCCTACATCAATGCCCTAAACGAAGACCCACAACAATACAGGCTTGTCACTGAATTCCCACCGAGCTTTTATTTCTTTTTTCTCTTGTGTTGATTCAATGTTCATCTGACATAAAAGCGTAACATTCATATGAACAATTCTTTCTCTACCATTAGGGCTGATGCAGAGAGATTGGAAACGTGNGCCCGTGCCCAAAACTCCAGTTCATTGGTTGATTTTTCATCAAAATCAGGAGAAATTGAGGACTTGTTGAAGGATATTGCAGAAAGAGCAGGGGGTAATGGAAGTTTCAGCTACAGTCGATTCTTTGCTGTTGGTTTATTTCGCCTTCTTGAATTAGCAAATGCAACAGACCCCACTGTTTTAGAGAAGCTTTGTGCAGCACTTAAATATCACAAAAGAAGTGTTGATAGGGATCTTGATGTATAC | |||||||||
gi|22398707|gb|BQ981184.1|BQ981184 QGE13B10.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGE13B10, mRNA sequence AGCTTATTCAAGAAGGCCAGA EST sequence (targeted fragment marked with yellow): GGTAATGGAAGTTTCAGCTACAGTCGATTCTTTGCTGTTGGTTTATTTCGCCTTCTTGAATTAGCAAATGCAACAGACCCCACTGTTTTAGAAAAGCTTTGTGCAGCACTTAATATCAACAAAAGAAGTGTTGATAGGGATCTTGATGTATACCGTAATCTCCTCTCAAAGCTTGTTCAAGCGAAAGAGCTTCTAAAAGAATATGTTGCGAGGGAGAAGAAGAAGCAAGCAGAAAGAGCGGAACCTCAAAAGGCTAATGAAGCGGTTAAAAGTTTCTTAGCAGAAAATTATGACACCAGAAAGTAGCGCATATAATAATCGAGCTATAATATTTCCCTTTTTGATCCTTGTTATACCGTTATTTGATGTTTCTTGTTATATTGTGAGAGATGATATAAGCAATCATTATACAAATTCTAAC | |||||||||
gi|22433380|gb|BQ998984.1|BQ998984 QGG20M15.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG20M15, mRNA sequence AGCTTATTCAAGAAGGCCAGA EST sequence (targeted fragment marked with yellow): TATGGATGGACACATCAAGACATCTAATAAAGACGAAAGGCTGATATGCTATATAGTCAACACTGCTGAATATTGTCATAAAACGGCGGGTGAGTTGGCTGAAAATGTCTCAAAAATAATAGATTCCCAATTGGCTGATTCAGTGGATATATCAGAAGTCCAGGATGAATTCTCATCAGTCATAACAAAAGCATTAGTAACATTAGTGCATGGTGTAGAGACAAAATTTGAGGTTGAAATGGCTGCAATGACACGTGTTCCTTGGGGTATGCTTGAAAGTGTGGGTGACCAATCAGGGTATGTCAATAGCATAAATATGATTCTTAGTGGTTGTGTTCCTGTACTTGGAAGCCTTCTTTCTCCAGTTTACTTTCAGTTCTTCTTGGATAAGCTGGCTTCATCTCTAGGTCCACGTTTCTACCTCAATATCTTCAAATGCAAGCAGATATCAGAAACCGGAGCTCAACAAATGTTATTGGATACTCAAGCCGTAAAGGCAATTCTTTTAGATATTCCATCCCTTGGAAGACAGGCAATAGGAGCTGCTGGCTATCCAAAATTTGTAAGCCGTGAAATGAGCAAAGCAGAAGCACTCCTGAAAGTGATACTGTCCCCTATTGATTCTGTAGCAGATACATATGGAGCACTTCTACCTG | |||||||||