| mature miRNA: AGCTTCCAAAACGCCGTCGTA species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158661138|gb|EX771029.1|EX771029 RR4BY55TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): GTATCTCCCCAACGGAAGTCTAAGCTCTCTGCTTCACGGCGCCGGTAAAGGGAGAGGAGGAGCTGATTGGGAGGCACGATACGATGTCGTTTTGGGAGTTGCGCATGCACTCGCTTATCTCCACCATGATTGCCTCCCTCCGATTCTACACGGCGACGTTAAAGCTATGAATGTCTTATTAGGTTCCCGGTTCGAACCGTTCTTAGCCGATTTCGGTTTAGCCAAAACCGTCTCATGTGAAGAAAATAACGATGTAGATTCATCAAAATCAAGTAACCGGCCTCCGTTGGCTGGCTCGTACGGTTACATGGCTCCAGAACATGCATCGATGCAACGTATAACTGAAAAGAGCGATGTGTATAGTTTTGGAGTGGTACTATTGGAAGTGCTAACCGGAAAGCATCCATTGGATCCGGATCTACCAGGAGGTGCACATTTGGTTCAATGGGTAAGAGATCATCTAGCCAAGAAAAAGGCTCCGGGAGAAATCCTCGACCCAAGGCTCCGTGGACGAGCCGATCCAATAATGCATGAGATGCTCCAAACGTTAGCGGTCGCATTCCTCTGCGTCAGTAATAAGGCAGCTGATAGGCCTATGATGAAAGATATTGTGGCAATGCTTAAAGAGATTAGGCAGCTTGACGTGGGACGATCTGACAACGATATGTTAAAAGCGGAAATGTGAAAATGGCAGCCACAGCCGCTACCGCCGGAGAAGTTTGTCACTCCTCGT | |||||||||
gi|166100950|gb|FD531021.1|FD531021 RR1FH35JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): TGATCAACTATACAAAACCGCTGATCGTCATAAACACGTTAGACGACAAATTGTTAAGCAGCTCAAAGCTAGTCCAGAGTCTTATGAAGGATACGTGCCTATGAACTTCTCTGAATATCTAAGGAAGATGTCTCGGTAAAGATCTTCTTTCCTAGAAACTCCATCACCCATTTTTTACCTCTTCTACGGTTTTAAGCCTTATTATTCGAATTTATAAACAGGAGTGGCGAGTGGGGTGATCATGTTACATTACAGGCAGCTGCAGATGTGTATCTGGTGAAAATAGTAGTGCTAACATCATTCAAGAATACATGTTATATTGAAATTCTCCCTACCTATCAAGAATCCAAAGGAGTAATCTTCTTGAGCTTCTGGGCAGAGGTTCATTACAACTCCATCTACTTAAACAGAGGTAAGTTTTACAAACGTGCAACTTATATTGACAGACTCTGTTTTATTGTTTCTTCTCTCTTCATCATTTCTTCTTCATGTGTATTTTGTGTGTGTTCAGATACATCTGCAACAGAGCTACAAAGGCGGAAAAAATGGTGGCGTTTTGGAAACTAGGTAGATCATGGATCGTCATCATCGCCTATATTAATATTTATTGACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTATGTTCTTTGAAATAGTCCCTTGGTAGCGAGATGACGAACAAAGCCCACAGCTTCAAAGTCTTACAATAATGTTACTTTCTTCTTTATGAGGAAGGTTTATTAAATGTTAACAAAAATAAATAAAAATACTCCAGACATTTTGGTCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|166108751|gb|FD543382.1|FD543382 RR2FK59TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): GGGAAGTAGAAATAAAACATCTACAAAAAATCATGAATGCTTCTGACTTCAAAAAAGCTACTGGCACTACCCGTGAAGGGCGGTTTAAGTTGTCTGATAATGGGAAGATTATGAGGGTGTTTTGGCAGCTGAACCCGAAAAATGAAGCGAAGAAACCGAAATACATAGACCTTGTGGAACGCCAATTATGGGAGAAGGTTTCTGGTCCTGTTCGAGACCAGAAGAGACACATCGAGTGTTGGGCATACAGCTCCACTGATCCCATCTCCACCTTACGAGTTATACTTGAGTTGGATGCCGTTTTTGTTCCTCTGTCCACGTGGTACCTCCACTCCAACGTGCATCCTGAAAAGATTGGCAAGGATCCAAGCGCTCTAAAAGGACATGCCTGTTATTCAACAACTACCAAGGAAGCCTATAGTTACATGAAAGACCACGGAGTGCCTAAAGAAAGAGTGCTTGAGTTTGACTGTAAGGAACCCCATCCAGGTGATACAGAACCTCACATCACCATCGACGGCTTTGGCACCTTGGGGACCTTAGAAGACGCACTGCTCCAGCTCCGCAAACAGCCAATCACGGCATCCCTTCTCGAGTACTCTGAACTTTGGACCCTGGGTCCGGATGAAATTTACCACGGCCCTACAAAGAAGGGTCATATTTAATTGGTAGCCATGGAGTCGAGATTGTCGACAT | |||||||||
gi|166112107|gb|FD544111.1|FD544111 RR2FT03TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): GAGACTTACAACGAAGCAGCAGCTCTTCTCTCATCCGCTTACCCCAACCTCTTCTCTCCATCCTCCTCCTCAAAGAAGACTCACTCCAATCCTCAATTCTATGGGTTCGCCAAGTCCCCTCTCCTCAGTGACAACGACGACGCTGCCTCCGAGCTTCTTCTTGAATCAGTCGAGGAGCCTGACTTTCTCTTTCTCCCGACGATTCAAGCGAGATCGGAGTACTTCTCCGAGCTGAAGGAGGTGAAAGTGAATCAATTCGAATTTTCAGACGAGTTCGACGCGGAGTCGATTCTTGATGAGGAGGTTGAAGTAGGGATCGACAGTATAATGGGAATCGTCGAATCCACCAACTCGGGAGAGAATCGTGGCCATCTAATTAACCGGTTAGAGCAGATGGTTATGATGAACCGAAGCACGAAGGGATTTAAATTCGCCGGTAACTTCTTCCCGTTGGGACTTGGACTGAGAAGCGCTCTCAGAGAACACAACGACGCGAGCTGGTGCAGGTTCCACACCGTCGATTTCGAACAGATCTCGCCGTGGATCCGATCCACCGATGAGGAGAAAATAATCGAAAGCAAGAAGTTGATCGGAGAAAAGAGCAAGAATAAGAAGAAAAACAAGAAAGTTGCAGAAGCGAAGAGATTGGATTCGAGTAAAGAAGATGCGGAGGAGAGATCAGGGAGCTGATGTTGAAGCTTGACTACGACGGCGTTTTGGAAGCTTGGTCTGAGAAAGAGTCTCCCTTCTCCGATGACGTTCTGGGCTCGGAAGCTACTACC | |||||||||
gi|158646212|gb|EX756103.1|EX756103 RR2C825TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): CTGATCTGAACAGTCTTCCCAAGGAGATTTCCTCGAGCCTGAAGAAGTATCAGTTTAGAGAAGTAGAAATAAAACATCTACAAAAAATCATGAATGCTTCTGACTTCAAAAAAGCTACTGGCACTACCCGTGAAGGGCGGTTTAAGTTGTCTGATAATGGGAAGATTATGAGGGTGTTTTGGCAGCTTAACCCAAAAAATGAAGCGAAGAAACCGAAATACATAGACCTTGTGGAACGCCAATTATGGGAGAAGGTTTCTGGTCCTGTTCGAGACCAGAAGAGACACATCGAGTGTTGGGCATACAGCTCCACTGATCCCATCTCCACCTTACGAGTTATACTTGAGTTGGATGCCGTTTTTGTTCCTCTGTCCACGTGGTACCTCCACTCCAACGTGCATCCTGAAAAGATTGGCAAGGATCCAAGCGCTCTAAAAGGACATGCCTGTTATTCAACAACTACCAAGGAAGCCTATAGTTACATGAAAGACCACGGAGTGCCTAAAGAAAGAGTGCTTGAGTTTGACTGTAAGGAACCCCATCCAGGTGATACAGAACCTCACATCACCATCGACGGCTTTGGCACCTTGGAGACCTTAGAAGACGCACTGCTCCAGCTCCGCAAACA | |||||||||
gi|161542153|gb|EY914546.1|EY914546 RR3DJ77TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): GCCGACGACACCGATCCGCAGTTAAACTAGCCATGTCGATCCTCGTCGCACCGAGCGTCGTCCTCGTTCTCATGGCGGTTTACACTCTCGTCAAAGCGCAGCGTGTCGCCGGGAAACAACACGAGGAGTTGGACACGTGGGAAGTGACTCTGTATCAGAAACTCGACTTCTCGGTCGACGACATCGTCAAGAACTTGACTTCGGCCAACGTGATCGGAACCGGAAGCTCCGGGGTAGTTTACAGAGTGACGATCCCGTCGGGAGAAACTCTGGCGGTGAAGAAGATGTGGTCGAAGGAAGAGACCGGAGCGTTTAACTCGGAGATCAACACTCTCGGTTCGATCCGACATCGGAACATAATCCGTCTCTTGGGTTGGTGTTCGAATAAGAATCTGAAACTCTTGTTCTACGATTATCTCCCCAACGGAAGTCTAAGCTCTCTGCTTCACGGCGCCGGTAAAGGAAGAGGTGGAGCTGATTGGGAGGCACGATACGATGTCGTTTTGGGAGTTGCACATGCGCTCGCTTATCTCCACCATGATTGCCTCCCTCCGATTCTACACGGCGACGTTAAAGCTATGAATGTTTTATTAGGTTCCCGGTTCGAACCGTTCTTAGCCGATTTCGGTTTAGCCAAAACCGTCTCATGTGAAGAAAATAACGATGTAGATTCATCAAAATCAAGTAACCGGCCTCCGTTGGCTGGCTCGTACGGTACATGGCTCCAGAACATGCATCAATGCAACGTATACTGAAAGAGCGATGTGTATAGT | |||||||||
gi|161537885|gb|EY910297.1|EY910297 RR3DF74JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): GAGTTAGAAAAAATGAAATCACCCCCCACCACCACCACCGTCAAGCTCAACGACAACGAGAGCTGATGTTGAAGCTTGACTACGACGGCGTTTTGGAAGCTTGGTCTGAGAAAGAGTCTCCCTTTTCCGATGACTTGCTGGGCTCGGAAGCTACTACCGGAGGAGCTGACGTCAATGCCAGATTAGCTCAGATAGATTTGTTCGGAGACAATGGAGTACGGGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTCGAACTCGGCTCTTCTCCAAGAAAATTCGATACCAAGTTCGCAAAGTTAATGCAGATCAACGTCCTCGAATGAAGGTATCCACCTTAATCCGTGGTAAAAACATGGACGGTTCGTGCGAAGGCCCAATGCTAACCCTCCAAGTGGACAAAGATAGCGATGAAAGAAAGAGCCAAGATTCACTTCTTTTATCCTTTTCATTCCTTTTTAGTTTTGTACTATATTATCTTTTGCGGTTGTTGTAGTTGAAATTTTGTTACCCTCATTTTTGTTCCTTAATTCATGGTCCTTTTAGTTTATAATGTAATTTTTTTCTTTCATAAATAAGGATCAATAAAGAGATGTTAGATGAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|166110770|gb|FD539785.1|FD539785 RR2FT03JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence AGCTTCCAAAACGCCGTCGTA EST sequence (targeted fragment marked with yellow): ACTTCTTCCCGTTGGGACTTGGACTGAGAAGCGCTCTCAGAGAACACAACGACGCGAGCTGGTGCAGGTTCCACACCGTCGATTTCGAACAGATCTCGCCGTGGATCCGATCCACCGATGAGGAGAAAATAATCGAAAGCAAGAAGTTGATCGGAGAAAAGAGCAAGAATAAGAAGAAAAACAAGAAAGTTGCAGAAGCGAAGAGATTGGATTCGAGTAAAGAAGATGCGGAGGAGAGATCAGGGGAGCTGATGTTGAAGCTTGACTACGACGGCGTTTTGGAAGCTTGGTCTGAGAAAGAGTCTCCCTTCTCCGATGACGTTCTGGGCTCGGAAGCTACTACCGGAGGAGCTGACGTCAATGCCAGATTAGCTCAGATAGATTTGTTCGGAGACAATGGAGTACGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTCGAACTCGGCTCTTCTCCAAGAAAATTCGATACCAAGTTCGCAAAGTTAATGCAGATCAACGTCCTCGAATGAAGGGACGGTTCGTGAGAAGGCCCAATGCTAACCCTCCAAGTGGACAAAGATAGCGATGAAAGAAAGAGCCAAGATTCACTTCTTTTATCCTTTTCATTCCTTTTTAGTTTTGTACTATATTATCTTTTGCGGTTGTTATAGTTGAAATTTTGTTACCCTCATTTTTGTTCCTTAATTCATGGTCCTTTTAGTTTATAATGTAATTTTTTTCTTTCATAAATAAGGATCAATAAAGAGATGTTAGATGAAAAAAAAAAAAAAAAAAAAA | |||||||||