| mature miRNA: AGGATTGCAGCAGCAACGGGGC species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|12257844|gb|BF867700.1|BF867700 963093D12.x2 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo AGGATTGCAGCAGCAACGGGGC EST sequence (targeted fragment marked with yellow): CGATTTGTAATACGACTAACTATAGGGCGAATTGGGTACCGGAGCCCCCCTTTTTTCACGGACTCTTAAGGTTACAGCAACGCTACTAGCGAGACAACGACGCAACCAGCGCAGGGGCTGGACAGACCCAGCGAGGCCTCCTCCGCCGGGGGGATGCACCCGCCGCCAGCCGCCAGGGGGGCGCGCCCGCCGCCGCCACCTAAAATCGTTGCGCCCTCCTCCTCCGCCACTGCCGTTTGCTAGGCTGCTGCTGCTGCCACCGTTGCTGCTGCAATTCCGGCTGGGCTCGCTCCGCCACCAAAACCACCACCGGTTGCTGCTGCGGCCATGACGGCCGCCGCGCTGTTGCGGCACACCGGCATATCGGGACGCCGCGCGCCTACAGGCGGGGACCGGGGGGACCACCCTTCCGGCGGGTGGAGTCGGTGGGGATGGGGTTATCNTACTCATTACGCTTACTTTATGCGCCACCCGCCTTGCACTCATTGCGGCGGAGCACACGGGCCGGGGCTTTTGTCGCTTGCGGACCGTTGGTGCGCAGCCCTCGCGGTTGTTGGACGGTCCCCAGTCGGCACTTCGTCACCGCCCGGAATGCGTGGTACCCAAGATAGGGTCACCGCGAGCGTCTGATCATGATGCCANTGCAGTTGCGTGTACATCACGCACCGGCATTCGAAACGAGGAGGGAAGCAAGTGCAGGTGAGCGAG | |||||||||
gi|22054020|gb|BQ811105.1|BQ811105 1030020G06.x1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGATTGCAGCAGCAACGGGGC EST sequence (targeted fragment marked with yellow): TTTTTTCAGGTACTTTTAACGTTACAGCAACCGCTACTAGCGGAGACAACGACCGCAACCAGGCGCAGGGGCTTGGACAGACCCAGCGGAGGCCTTCCTCCGCCGGGGCGGATGCACCCCCNCGCCAGCCGCCAGGCGGGGCGCCCCCGGCCGCCGCCACCTAAAATCGTTGGGCCCTCCTCCTCCGCCACTGCCGTTTGCTAGGCTGCTGCTGCTGCCACCGTTGCTGCTGCAATTCCGGTTGGGCTCGTTCCGCCACCAAAACCACCACCGGTTGTTGTTGCGGCCATGACGGCCGCCGCGCTGTTGCGGCACACCGGCATATCGGGACGCCGCGCGCCTACAGGCGGGGACCGGGGGGACCACCCTTCCGGCGGGTGGAGTCGGTGGGGATGGGGGTCACGTCCTCGATGCGGCCAATCTTAATGCCCGCGCGGGCCAGGGCACGCAGGGCGGACTGGGCACCGGGGCCGGGGGTCTTGGTCCGGTTGCCGCCGGTGGCGCGCAGCTTGATGTGCAGGGCAGTGATGC | |||||||||
gi|10127875|gb|BE726579.1|BE726579 894092H11.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA AGGATTGCAGCAGCAACGGGGC EST sequence (targeted fragment marked with yellow): TTTTTTCACGTACTCTTCACGTTACAGCAACGCTACTAGCGAGACAACGACGCAACCAGCGCAGGGGCTGGACAGACCCAGGGAGGCCTCCTCCGCCGGGGGGATGCACCCGCCGCCAGCCGCCAGGCGGGCGCGCCCGCCGCCGCCACCTAAAATCGTTGGGCCCTCCTCCTCCGCCACTGCCGTTTGCTAGGCTGCTGCTGCTGCCACCGTTGCTGCTGCAATTCCGGTTGGGCTCGCTCCGCCACCAAAACCACCACCGGTTGTTGCTGCGGCCATGACGGCCGCCGCGCTGTTGCGGCACACCGGCATATCGGGACGCCGCGCGCCTACAGGCGGGGACCGGGGGGACCACCCTTCCGGCGGGTGGAGTCGGTGGGGATGGGGGTCACGTCCTCGATGCGGCCAATTTTCATGCCCGCGCGGGCCAGGGCACGCAGGGCGGACTGGGCACCGGGGCCGGGGGTCTTGGTCCGGTTGCCGCCGGTGGCGCCCAGCTTGATGTGCAGGGCAGTGATGC | |||||||||
gi|22052339|gb|BQ810187.1|BQ810187 1030015H11.x2 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGATTGCAGCAGCAACGGGGC EST sequence (targeted fragment marked with yellow): TTTTTTCACGTACTCTTCACGTTACAGCAACGCTACTAGCGAGACAACGACGCAACCAGCGCAGTGGCTGGACAGACCCAGCGAGGCCTCCTCCGCCGCGGCGATGCACCCGCCGCCAGCCGCCAGGCGGGCGCGCCCGCCGCCTCCACCTAAAATCGCTGCGCCCTCCTCCTCCGCCACTGCCGCTTGCTAGGCTGCTGCTGCTGCCACCGTTGCTGCTGCAATTCCGGCTGGGCTTGTTCCGCCACCAAAACCACCACCGGCTGCTGCTGCGGCCATGACGGCCGCCGCGCTGTTGCTGGCACACCGGCATATCGGGACGCCGGGCGCCTACAGG | |||||||||
gi|22054021|gb|BQ811106.1|BQ811106 1030020G06.x2 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGATTGCAGCAGCAACGGGGC EST sequence (targeted fragment marked with yellow): TTTTTTCAGGTACTCTTCACGTTACAGCAACGCTTCTAGCGAGACAACGACGCAACCAGCGCAGTGGTTGGACAGACCCAGCGAGGCCTCCTCCGCCGGGGGGATGCACCCGCCGCCAGCCGCCAGGCGGGCGCGCCCGCCGCCGCCACCTAAAATCGTTGGGCCCTCCTCCTCCGCCACTGCCGTTTGCTAGGCTGCTGCTGCTGCCACCGTTGCTGCTGCAATTCCGGCTGGGCTCGTTCCGCCACCAAAACCACCACCGGTTGTTGTTGCGGCCATGACGGCCGCCGCGCTGTTGCGGCACACCGGCATATCGGGACGCCGCGCGCCTACAGGCGGGGACCGGGGGGACCACCCTTCCGGCGGGTGGAGTCGGTGGGGATGGGGGTCACGTCCTCGATGCGGCCAATTTTCATGCCCGCGCGGGCCAGGGCACGCAGGGCGGACTGGGCACCGGGGCCGGGGGTCTTGGTCCGGTTGCCGCCGGTGGCGCCCAGCTTGATGTGCAGGGCAGTGATGCCCAGCTCCTT | |||||||||