| mature miRNA: AGGATTTGAGAAGTTGAGGTA species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78750081|gb|DV626484.1|DV626484 96949.1 Cold Sweetening C Solanum tuberosum cDNA clone 96949 5', mRNA sequence AGGATTTGAGAAGTTGAGGTA EST sequence (targeted fragment marked with yellow): TACCTACACTTCTTAAATCTTCTCATTGAACCTAAAAAGAGCTCACAGATGTATAGAAAACAAATACAGCTTAGAGCAAACGAATCTCCTGACTTTTATTAGTGAACAAGGCCCAACTTCTTTGCAAAGTCATCGTCATCATCATCCAAGAATTCATCATCAGGATCACCTTCGTCGAAGTTGTAATCTTCACCTTCAACCGCCTCATAGTCATCATCATGTCCATCTCTCTGATCATAGCCTTTGTGGTCTTGGGCGTCTGCTCCTTCCACAACCATCTCTTCTTCAGCTTCAAGTTCATTTTCACTGCGGTGCAAAGGAGATTGGTGATCCGCTGATTTGGGTACAAGCTTAGAATCTTCCTTCTGAATAGGAAGGTCAGACCCATTCTTGGTAACAGAGGAAGGAAAATCCACATTCCCTGAAGTCATGGAAGTCCTCTCAGTCTGGTGTTTTCTTTCATGTTGATCGTCTTCACTCCCACCAGATGACATGCTACCTTCACCCCCTCTTTTCCTCTTCAAAATTTCTTTTAAAGGCATTGGTCCTTCAAATGATAGAT | |||||||||
gi|40951119|gb|CK565545.1|CK565545 dorp2206 Dor1 Solanum tuberosum cDNA, mRNA sequence AGGATTTGAGAAGTTGAGGTA EST sequence (targeted fragment marked with yellow): AAATTCAGCATCTAAAATGCTAAGCAAATCAGCTGGTAGTCTTTAATCATCTGAAGGTAGATTGAGCTTATAAAGATGGTAGTCATTTGACTTGCCCAAATGCACAACCTCCTTAGCTTCTCGAATCCTAGACGAGCTCACCAACCCATCGACCACTCTTTGCAACAACTTTGCATCAACATTACACTTTCTTTTTAAAACCTCTTTGCACAGCTCAAGAGCCCAATCAAAATCACCCTTTTCGCATGCAGATGAAATAACACTAGCAAATATCACCTTGTTTGGAGCAGAACCGCTCTTCACAAGTTCTTC | |||||||||
gi|66839298|gb|DR037403.1|DR037403 49208.3 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 49208 3', mRNA sequence AGGATTTGAGAAGTTGAGGTA EST sequence (targeted fragment marked with yellow): GATTTCTCCAAGTGCTACCTTAACATCTCAATTCCTCAATTGTCACAGACCAAATGACCATAAATGCCCTTCCTCTTCTTCACTCTCTTTCAGTAAATCAAACTCAAGTACCCTACTTATTGGTCCTTCAAGTGTATCATCACGAAATGGACAGAAAGCTAGGAGATCTTTCCATGTTCATGGCTTGTTTGGTGGCAAAAAGGATAATAACGGTGATGATAATTCCTCAAAGGCTGGAGTACTTGGAAACATGCAAAATCTGTATGAAACTGTAAAGAAGGCACAAATGGTTGTTCAAGTCGAGGCAGTACGTGTGCAGAAAGAACTTGCAGCTGCAGAGTTTGATGGCTATTGTGAAGGTGAACTTATAAAGGCAACACTTTCTGGTAACCAACAGCCAGTGCGCATTGAAATAACTGACGCCTGCAATGGACATGGGATCTGATAAACTCTCACTTCTAGTAACAGAGGCGTACAGGGACGCGCATCAGAAAAGTGTAGTGGCAATGAAGGAGAGAATGAACAATCTTGCTCAGAGCTTAGGGATGCCAGCAGGATTAGAAGGAATGAAGTAATTTAGATAACCAGAAAATAAGCTCCAATTTTGTTTATAAAGAGCAGCACTTTTAATTATTTGAGTTGCCAACTTAGATTTTTCCTTTTGTGCAAACACAGTGAAGCAATATATAAGTCCTCATCCAAATATTGCTATTGTCATTTCAAAAAAAAAGGGGG | |||||||||
gi|160518901|gb|AM909320.1|AM909320 AM909320 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 7K19, mRNA seq AGGATTTGAGA-AGTTGAGGTA EST sequence (targeted fragment marked with yellow): AGCTTGATATCGAATTCCATCAGGCAGAGGACGAGACAGAACGCAGAAACAACTGCTAAAGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCAGGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCGGGAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAAGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACACTAGAAAAATGAAAGAATGAAGAAGATCGATAAATTTTGTTATTCTCTGGGATCCTTTTGAGATGCCTGGGTAGAAAGTTAAACCTACCAGCTTCATTATTTTCTAGATGTA | |||||||||
gi|66839297|gb|DR037402.1|DR037402 49208.2 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 49208 5', mRNA sequence AGGATTTGAGAAGTTGAGGTA EST sequence (targeted fragment marked with yellow): GATTTCTCCAAGTGCTACCTTAACATCTCAATTCCTCAATTGTCACAGACCAAATGACCATAAATGCCCTTCCTCTTCTTCACTCTCTTTCAGTAAATCAAACTCAAGTACCCTACTTATTGGTCCTTCAAGTGTATCATCACGAAATGGACAGAAAGCTAGGAGATCTTTCCATGTTCATGGCTTGTTTGGTGGCAAAAAGGATAATAACGGTGATGATAATTCCTCAAAGGCTGGAGTACTTGGAAACATGCAAAATCTGTATGAAACTGTAAAGAAGGCACAAATGGTTGTTCAAGTCGAGGCAGTACGTGTGCAGAAAGAACTTGCAGCTGCAGAGTTTGATGGCTATTGTGAAGGTGAACTTATAAAGGCAACACTTTCTGGTAACCAACAGCCAGTGCGCATTGAAATAACTGACGCTGCAATGGACATGGGATCTGATAAACTCTCACTTCTAGTAACAGAGGCGTACAGGGACGCGCATCAGAAAAGTGTAGTGGCAATGAAGGAGAGAATGAACAATCTTGCTCAGAGCTTAGGGATGCCAGCAGGATTAGAAGGAATGAAGTAATTTAGATAACCAGAAAATAAGCTCCAATTTTGTTTATAAAGAGCAGCACTTTTAATTATTTGAGTTGCCAACTTAGATTTTTCCTTTTGTGCAAACACAGTGAAGCAATATATAAGTCCTCATCCAAATATTTGCTATTTGTCATTTCAAAACAAAAG | |||||||||
gi|71037078|gb|DR751738.1|DR751738 02-C03 suppression subtractive hybridization library of Phytophthora infestans-challenged lea AGGATTTGAGAAGTTGAGGTA EST sequence (targeted fragment marked with yellow): ACATGAACCAAATAGGGAACATATAAAAGATACTAAACTGGCATAATAACAAAAAACAGATATAGAGCCAACCCTCCTTAAAGTTCGCCATCCTCACTTCTTTGACTTCTTAGATCCTCCCTGGGCAGTCTTGGCTGGGGGTGCTGCTGCTGCTGGTGCCGGGGCTGGGGCTGCAGGTTGT | |||||||||
gi|160518249|gb|AM906731.1|AM906731 AM906731 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 7O18, mRNA seq AGGATTTGAGAAGTTGAGGTA EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAAAATTAAATCCCCAAGGAATAGTTCTGTAAAGCTGTCGAAATGAAGGTAGATCAGCAAAGTTGAAGTGATCGAGCTTTCGTTGGAAATATTTGGTCTCATACTGGTTCCTGTGCATGGAAATTTCCTTTTTTCCTAAGCAAAGTAGAATTATTTTGTCATCGTATTTGCTAAGTTCGCTGTTCATTGTAGCTTCTTCTTTCCTTAGCAAGATTGTTATGTTTTTCTGTTGGTGATCTATGATAATGTTGATGGCGAGGTGCCTTATCGAGATCTGCAAGTAGCTCATATTGAGAGTTTCAGGTAATATAAAGGATGTACGCCCCTTATATACTTTGTTTCGCTGGAGTATCAAGTATGGGGAACGGAAGAGGTCTACAGACTGCATCTCATATTAATAATAGACCACTTGCACATGCTGCCACGGGATCAAAGAGCGCTAGATATGAACCACTTTCGTATGCCATTTTAAACCTTCAACGGAGTTAAATTTTACTTCAGAGTCTCACTCCAACTTCTCAAGTTCTTTCAATTGTTTACCTGGTCAGACGAAGAGAAGCCGACATTTTTAGTATGTGCTCTTTCTACGTCCCCAGATTAAGAAGCATAAGATAGGTAGATCATGAGCTCTTGAAGACTAAGTTGTTGTATTATATGTTAAATGTAATAAAAGGATTTTG | |||||||||