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mature miRNA: AGGCAAATCATCCTTGGCTAT
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|222364670|gb|GH723262.1|GH723262 AZO3.110B15R011127 AZO3 Triticum aestivum cDNA clone AZO3110B15, mRNA sequence

AGGCAAATCATCCTTGGCTAT
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TCCGTTAAGTAAGAACCGAAA

EST sequence (targeted fragment marked with yellow):
GCTGAGACCAGTTCTGTTCTCTGCACATCGAGGTTCAGCCCTGCACCGGCCATAATTTGTTACACTACCTAATACAGTAATTTTCAAAAGCGAACCAAATCCCACTCTACCGCAGTACGTACAAACAAGCGCTATCGATCCCGAGTCAATCATCAATCTTACACGCGCCCCGCAGAGGACGCAGCACAGCCTAGTTCACACAAGGACAACGACAGGGGTGACAGAATGCGAAAGCCAAGAATGAATTGCCTGGAGACAGCAGCAGACCCTGCCCGACCCACGGGAACCGGACGCCATGACGGACGGAGATCCGCCCTCAGGGCGCCGTACGCCGGCGGGCAGAAGAAGAAGCCGCTGTTCTAGGTTGCATCAAGGTGCCACTTCACGCCTGACGGAGGTGCAGGTCCGGCGGCACCCGGAGGTACTCGGAGCTCTGCTCGCCCTTGCTCGCCTCGGTTCTGCCGCCGTTCTCGTCCTTCTTCGTGTTCAGGAACCGGCCGCCGGTGCCCCTCGCCCGCCGCATCGCGTGCTGGTGCCGGGATTCGTGGAGGTAAGGCTTCCTGGCCCTAGATCCCCTTCCTCTCG