| mature miRNA: AGGCAAGTCATCCTTGGCTAC species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207397631|gb|FF361487.1|FF361487 BG02038B2E06.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B AGGCAAGTCATCCTTGGCTAC EST sequence (targeted fragment marked with yellow): GAGGCCTTGCATGGCGATGAGGGCTTCTTCTGGTAGCCAAGGATGACTTGCCTGTGGATAGCTTGATCCATTGCATGTATGTATGTGATCTCTCACTATGTACAACAGGCAGTCTCCTTGGCTAGCCCGAGTGGCCCTCACCCTTCATGCCAGCCCCTCATCTCTTCTCAAACCGTAACCCATTCCTAGCTAGTTGTACATGACGCCAACCACTTCAGTTCAACTGGACTTCTTCCCTGCTTCCTCTTTGATCGATTCACTCTACCTGATCTGTAAATTTGTGCATGCATGCAGAAAAAGCCGTTCGACCAAGAGAGGCCAAAGAGCCCATGCGCGCTCGCTCGGAAGAGGACAAATCATCATCGGTTCATCACTCCCTGCACCTCCACGTAGTACAGTACGGAGGACCCACAAATTGCTCTGTTTGGATCCGTAATTCTGCTCAGTAAGAGGTGCCATACTTAGATGATTCGCTGAATCATGATTCATGTGCTTCGAACCGATTAGCTGGCTATGAGAAGCAGTTGCAGTGCATTAGCATTTTTTTCATGGGACGATGCAGGATCCTTGATGTAATATTTATTATGTTTAGGGTGGCTTGTAATTCTTATGAAACCTTTATAATAAATCTGGTTCCCTTTTCNNNAAAAAAAAAAAAAAAAATGC | |||||||||
gi|207481905|gb|FF351082.1|FF351082 BG02017B1B11.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B AGGCAAGTCATCCTTGGCTAC EST sequence (targeted fragment marked with yellow): ACCGATTTTTNNNTTTTTTTTTTATCATACATGATGGATGGTCATTATTACCCAACAAAAGTGATAGGAAAACAGTTCAAGCAGGCTCCAGCTTAGCAGCACCTGCCATGCCACACAAATCTACCACGACCAGAGAACTGGCTGCATCGTCCCAAACACAGCGACTGTCTACCAAACCCCCAAGTGACAATTGCACAGACTCTAAATTCAGTTTACAATATCATTGGACCGAATTGACGGTCGCCACACACATAAGCCAAGGATGATTTGCCAGGGGACAACGGTCAACCTGCCGCTGCCCGCCCTAGGCGCCCCCTCTCGCGCGGTAATGGAAGTCACCGGACGGTAAGGTGTGGTCGTGCTTTGAGAACATGCCGCTGTCTGTAGGAACCCCGGCATGGCCAGATCTCGCTGAGGCGGTGCCGCCGCCAGAAGCCTCGGACTTCTCCTTTGCGTTGAGGAACCGCCCGCCTGTTCCTCGAGCCCGCTTCATCGCATGCTGGTGCCGGGACTCATGGAGGTACGGCTTGCGACTCTTCACCAGCTTATTTTCAGCCTCTAATTTTGCGCGCAGCTGTCTCCTTCGGAGAATGGCATGGTATTGCTTCGCGTTTACATAAATGGGCTCTTCGGCAGCAGCCGGTTCAATTGGCAGTGGCACTCGAGAGGATGGTACCATACCCACCATCTGGGGGTGCATAATAGCATGTGCACCATAAGCTGCCACTGCACCGCCATAGTAAGGATCAGCATATGGGTATGATATGGC | |||||||||