| mature miRNA: AGGCTTTGTGCTGATGTTCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73882552|gb|DT485290.1|DT485290 WS02527.B21_M23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_M23 3', mRNA sequence AGGCTTTGTGCTGATGTTCA EST sequence (targeted fragment marked with yellow): GAGGATCAGCACAAAACCTCCATGAGGATAACATCCAACGAACCACGGTGGTAATTTATTGCATATTTTACAAATCAGCAACTGATTTTTTGGGGAAAAAGAAAAGGGATCTTCATATTTTACAAAAACATACTGCATCATCTTTTATTATTCCTCCTAACCAGGAAGGCTGTGAGAACCCGCATCTGTGTCCAAAACCAGCACGGAACAGGCGCGCTTCGACTTAGGAGCTTTCTTTGTCATAAACTTCACCAGCATACTTCCAATTCATTACCTTCCATATGTTCTTCAGATAATCAGGTCTGACATTCTTGTACTGCAAATAATATGCATGCTCCCAAACATCAACACCAAGTAATGGAACCAAGGGTCCTTTAGTTACCAATGGATCCTGATTTTCTGTGGTCTCAACCACAAGTTTCTTTGATTCTTTGTCCAGACCAAGCCACACCCATCCAGAGCCCTGTACAGCAGCACCCTCTGTGCTCATTTTTTTAATCAATGACTCCAGAGAACCAAAATCTTCATCAATAGCCCATCCCAGCCTACCATGCGGTGGTTCACCGCCTCCTTCTTGGACAGGAGTGAGATTCTTCCAGAAAATTGAATGGTTGACATGACCTCCGCCGTTGAACTTGATAGCGCTCTGCAATTTAACAACAGCAGAAGAATCGACATTTTCCATGGCATGATGAAGTTG | |||||||||
gi|52389806|gb|CV233344.1|CV233344 WS01210.B21_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01210_A07 3', mRNA sequence AGGCTTTGTGCTGATGTTCA EST sequence (targeted fragment marked with yellow): GAGCACTGGGGAACCTGGGATTGGTTGGATGACTGGTTTCCTCTTTGTAAGCAGCTTTGTTGGGCTACTTGCTCTAGTTCCTCTGCGAAAGTACAAACAAGATATCAAGTGGATTTGACATTAAAACAACACTAGAGGGGCAGATTCATGGTGCTGGAGGCATTCTAGACAAATGTAAAGGATTTGGTCTTGCAGACAACTTGCAGCTATCCATTCAGGAGTTTAGAACAAATCCATTTTTGGTAATATTTTTCCCACTTTTGTTGCTACTAGGTATAACTATTATAAGAATAACAGATGAGCCACTCTTTTTAGATTTCTCGGGTGATCTGGAAAAATGAAACCAGCAACGCATTCAGAGAGAGAAAAATGCATCTCTCATGTGAATTCAAGCATCGAGCAATGTGAGAATTTATGAGAAGCAGCACAAGGCTTGCAAGTGTACTTGCCTCCTTTTGGGAACTTAGCTAAGATCCTCTGGCATTTTTTTATGAACCTCTTCCCTTCTCTCATCCTCTTGTTTATGAACATATACAAGGAAGAATAGACATAGCATTACCTATCTGGCATTGAAATATAAGGTTTGATCCTGCTAGGCTCCTTTTAATAGAGGATATTCCTACCAAAAAAAAAAAAAAAA | |||||||||
gi|73877323|gb|DT480061.1|DT480061 WS02527.BR_M23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_M23 5', mRNA sequence AGGCTTTGTGCTGATGTTCA EST sequence (targeted fragment marked with yellow): GAGGATCAGCACAAAACCTCCATGAGGATAACATCCAACGAACCACGGTGGTAATTTATTGCATATTTTACAAATCAGCAACTGATTTTTTGGGGAAAAAGAAAAGGGATCTTCATATTTTACAAAAACATACTGCATCATCTTTTATTATTCCTCCTAACCAGGAAGGCTGTGAGAACCCGCATCTGTGTCCAAAACCAGCACGGAACAGGCGCGCTTCGACTTAGGAGCTTTCTTTGTCATAAACTTCACCAGCATACTTCCAATTCATTACCTTCCATATGTTCTTCAGATAATCAGGTCTGACATTCTTGTACTGCAAATAATATGCATGCTCCCAAACATCAACACCAAGTAATGGAACCAAGGGTCCTTTAGTTACCAATGGATCCTGATTTTCTGTGGTCTCAACCACAAGTTTCTTTGATTCTTTGTCCAGACCAAGCCACACCCATCCAGAGCCCTGTACAGCAGCACCCTCTGTGCTCATTTTTTTAATCAATGACTCCAGAGAACCAAAATCTTCATCAATAGCCCATCCCAGCCTACCATGCGGTGGTTCACCGCCTCCTTCTTGGACAGGAGTGAGATTCTTCCAGAAAATTGAATGGTTGACATGACCTCCGCCGTTGAACTTGATAGCGCTCTGCAATTTAACAACAGCAGAAGAATCGCCCTTTTCCATGGCATGATGAAGTTG | |||||||||