| mature miRNA: AGGGCTGCAATCTGGTGGTT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109974391|gb|DT806883.1|DT806883 RECh0061 Forward and reverse subtractive library of rice sheath after Chilo suppressalis att AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): AATAGCTGGTTGTGCATTGGATGGTGCTGAAGGTCCACAATGGATGGAAGCATGGGTAAGGGAGATGCCAAATGTTTTAATTCTTCCTCGAAGTGCAGACTACAGTGAAGAAGTGTGGATGGAAATAAGAGAGAAAGCAATCACGATATTGCAGTCCTTTTTTTTTGATGGTGCTGTTCCAAGTAGTGCAATATCTGATGAAGATGAGGAAATTAGCGAAGCTGGAAATGAAGATGATCAGCTAGAAGAAAAGGTTAGCAGTTCACAAGTTTTTGACTCTGAGCAGCAGACAGATGAAAGTCAGTTAAAAATGGAGTATGAAAAGAGGAGAGCCATATCCCAACATAAAGAGCCTCAAGCATCTGCTAGATCTCAACATATTGTCCCCCGATC | |||||||||
gi|58601784|gb|CK012312.1|CK012312 27380rsicef_3231.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CCGGGCTGCAGGAATTCGGCACGAGGGGCCACTCACCCATGGCTACTACACCGCGGGCGGGAAGAAGATCTCCGCGACGTCGATCTAGTTCGAGAGCCTCCCCTACAAGGTGAGCGCCGCCACGGGGTACATCGACTACGAGAAGCTGGAGGAGAAGGCGCTCGACTTCCGCCCCAAGCTCATCATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCCGACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCGCAGGAAGCTGCAAATCCTTTCGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCCCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCGTCACTGCAAGGTGGCCCTCACAAACACCAGATTGCAGCCCTTGCTGTTGCTCTGCAGCAAACCATGACACCTGGATT | |||||||||
gi|58666078|gb|CK054764.1|CK054764 59271rsicek_15464.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): GCACGAGGCCGGCTCGCCGGCCAACTTCGCCGCCTACACGGCGCTCCTCAACCCGCACGACCGCATCATGGGGCTCGACCTCCCCTCCGGTGGCCACCTCACCCATGGCTACTACACCGCGGGCGGGAAGAAGATCTCCGCGACGTCGATCTACTTCGAGAGCCTCCCCTACAAGGTGAGCGCCGCCACGGGGTACATCGACTACGAGAAGCTGGAGGAGAAGGCGCTCGACTTCCGCCCCAAGCTCATCATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCCGACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCGCAGGAAGCTGCAAATCCTTTCGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCCCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCGTCACTGCAAGGTGGCCCTCACAACCACCAGATTGCAGCCCTTGCTTGTTGCTCTGCAGCAAACCATGACACCTGG | |||||||||
gi|41884166|gb|BX928997.1|BX928997 BX928997 Oryza sativa library (Han B) Oryza sativa cDNA clone y836e02p5, mRNA sequence AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TTGTGTGGTACCGCGGAATCGGCATTATGGCCGGGGTGCTCGGGATCTACGGCCTCATCATCGCCGTCTCATCAGCACCGGGATCAACCCCAAGGCCAAGCCCTACTTCCTCTTCGACGGCTACGCGCCCTCTCCTCCCGCCTCGCCGCCGCAACCACCGCCGCCTCGCCGCAGCATCACCCGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCCGACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCGCAGGAAGCTGCAAATCCTTTCGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCCCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCGTCACTGCAAGGTGGTCCTCACAAACAACAGATTGCAGACCTTGCTGTTGCTCTGCAGAAAACCATGACACCTGGATTCAAGGACTACGCAAAGCAGGTCAATGCCAACGCTGTCGCCATTGGCAAGTATCTTATGAGCAACGGCTCCAAATGGGGACAGGTGGGACGGGGAACCCCCTGGTGTACCGAGGAACTATCGCCCGTTGGATGAATGGACACGGGTTGGCAATCTGTGCCTGTGGGTATACTATACGAATGGCTTTGGGAACAACGATGGACGAGTGCCGCTGGCCTCGGAAACCGGGTGTCAGGCAATACAGAGTCGACGCGAGCACGTTCAACAGACGATCTATTAATGGAAGAGCACGTAAGCACCAGCCTCATCTCGTTCGTCCTCTTGCGCGTCGCTCTGTGTTTCAGTAGCAACGAGTGCGCGCAGCGTGATGGGAGAGTGATGAGACGACGAGTGTCGACGAAGTTACAAGTAAGACGCAGCAGCGTCAGTAGAGAAGTACGGCAACCGTAACGCAGAAGAGGAGGGCCGATACATGTGTACGCAGCAGCAGATATACGAAGACGGCAGCCAGAGCACCGACAGATGATTACGAAGCAGCCATC | |||||||||
gi|117245802|gb|CT856422.1|CT856422 CT856422 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CTCAATAAATTCGTGCAGTGTATGATTATGTTGTCAGACTGTTTCCTATTCTCATTGGGGTATTATTTCAGTGTAAGCATATGACATCTCCCCATTGCCCATTCATAGATCTATAATAGTAATATGTATACCAGATTGCATCAAGTGAGTTGCTTAAGTTTAAATTCACCATATTGCAGCTCTATTATTTTTCTTTTCCTTACCTCTTCAGTTTTGCATGTTGAATTGTTGTGATGGACAGTGGCCGGAGCTTATGTTCATGAGCTATATGAAAATAATTACTCCATGTTGAATTGACAACTGGTTTGTTCAAAGATATAGACAATCTATGTACAGAATATTCAAATATGCTACCATATAATGTAATCTATGTTGGCATATTTTAAGTAATGTACAATCCTTCTATTGCTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAGTAAAAAAAAAAAAACAGGGGCCGTTTGTCCCCGGGGGGGGGCCCGGGACCCAATTCCCCCAATAGGGAGCCGAAAAAACCCCGCCCTCTGGCCGGCTTTTTAAAACTCCGGGGACTGGGAAAACCCGGGGGGTTCCCCAATTTAATGGCCTTTGCACACATTCCCCCTTTTCCCCCGCGTGGGGTAAAACCGAAAAGGCCCCGCCCCCAATCCCCCCTCCCCAAAATTTTGGCAACCCCGGAAAGGGGAAAGGGGAACCCCCCCCCTTGTTACCGGCCATATAAAAAGCCGGGGGGGGGGGGGGGGGGTTTACCCCCAACCGGGGACCCCCTAATCTTTTCCGGCGGCCCTAAAGCGCCCCGGCTCTTTTTCCTTTTTTTTTTCCTTTTTTTTTTTCCCCCCCCTTTTCCCGGGGGGTTTTTTCTCCCGCTAAAATTTAAAAATCGGGGGGCCTCCCTTTTAGGGGGTTCAAATTTTTGTGGTTTTTCCGGCCCCCCCCCCCCCCCACAAAAAATTTATTATGGGGGTGAGGGGTTCTCCATGTTGGGGCCCCCCCCCCCCTATAAAAAAGGGTTTTTTTCCCCCCCTTTGCCTTTGTGAAACTCCCCCGCTCCTTTTAAAAATGAGGGGGACCCTCTTTTTTTTCCCCAAATGTGGAAAACACCCCACATAAACCCCCCCTGATTTTTCGGCGGCTCCTTCTTTTTTTTTTGTATTTGTTTTTAAAAGGAGGGGGATATTTTTTGTCACCCCAAAATATATCTTCCTCCCCCCCCCCCTTTTTGTTTTGTGTGTTTT | |||||||||
gi|117225079|gb|CT852995.1|CT852995 CT852995 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TCCCCTCTCCTCCCGCCTCGCCGCCGCAACCACCGCCGCCTCGCCGCAGCATCACCCGCAGCCGCCGCCGCCGCCATGGACTCCGTCGCGTCGTGGGGGCTGACCCCGCTCGCCGCGGCCGACCCGCTCGTCCACGACCTCCTCGAGCGGGAGAAGCGGCGGCAGCGGAGCGGCATCGGGCTCATCGCCTCGGAGAACTTCACCTCCTTCGCCGTCATGGAGGCCCTCGGCTCCGCGCTCACCAACAAGTACTCCGAGGGGATGCCCGGGGCGCGCTACTACGGCGGGAACGACGTCATCGACGAGATCGAGAACCTGTGCCGCGACCGCGCCCTCGCCGCGTTCCGCCTCGACGCCGCGTCGTGGGGCGTCAACGTGCAGCCCTACTCCGGCTCGCCGGCCAACTTCGCCGCCTACACGGCGCTCCTCAACCCGCACGACCGCATCATGGGGCTCGACCTCCCCTCCGGTGGCCACCTCACCCATGGCTACTACACCGCGGGCGGGAAGAAGATCTCCGCGACGTCGATCTACTTCGAGAGCCTCCCCTACAAGGTGAGCGCCGCCACGGGGTACATCGACTACGAGAAGCTGGAGGAGAAGGCGCTCGACTTCCGCCCCAAGCTCATCATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCCGACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCGCAGGAAGCTGCAATCCTTTCGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCCCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGAAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGGTGCTGGCTATGACTACCGAGACAAGATCACTTTCGCAGTGTTTCCCGGCACTGCAAGGGTGGCCTTAACACCCCACAGGATTGCAGCCCTTTGGTGGTTGCTTTTGCAGCAAAACCAATGAACCCCTGATTTCAAGGGCCTACCCCAAAGCAGGTCAAAGGCCCAACCTTTGTCCCCATTGGCCAAAGTATTTTTTTGAGCCAAGGGGCTCACAAAAAGGGGGGAAGGGGGGGGGAACCCGGAAAACACCCCCTTTTTTTTTTGGGGGTGATTTTTTCCCCCCCTTTGGGTTTTGGGGCTGCGAACAAAGGGGGGGGGGGAAAAAAGAAAAAGGGGGGGGACCCCCTGTGTTTGCCAAAAATATAACCCCCTCTAAAAAACAAAAAAAAAAAAAAGTTGGTTGTGGTTT | |||||||||
gi|218499295|gb|FG965742.1|FG965742 MA_LYP9_04526 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CGGCCGCCTAAACTAGTGGATCCCCGGCTGCAGAGCAATGAAAACAATGCATGTTGCCGCTGCATTCTGTCGCCGCATCAAGCTGCGGCGTCCGATTCGAATGTACCTCGATCGCAAGACAGACATGATCATGGCGGGAGGGCGGCATCCGATGAAGGTAAAGTACTCCGTCGGTTTCAAGTCCGACGGCAAGATCACGGGTCTGCACTTTGATCTTGGAATGAACGGCGGAATATCGCCGGATTGCAGCCCGGTGTTGCCAGTCGCCATTGTCGGGGCTCTGAAGAAGTACAACTGGGGCGCTCTCTCCTTCGACATCAAGGTCTGCAAGACGAACGTCTCGTCGAAGTCGGCGATGCGGGCTCCAGGCGACGCGCAGGGCTCGTTCATCGCCGAGGCCATCGTCGAACACATCGCGTCCACTCTCTCAGTGGACACGAACGCCATCAGGAGGAAGAACCTCCATGACTTCGAGAGCCTCAAGGTGTTTTATGGGAATAGCGCCGGTGATCCTTCGACGTACAGCCTCGTCACCATCTTCGACAAGCTGGCCTCGTCGCCGGAGTACCAGCAGAGGGCCGGCATGGTCGAGCACTT | |||||||||
gi|163918303|gb|EG715293.1|EG715293 Os6CPREST0854 6cm rice panicles Oryza sativa Japonica Group cDNA clone 6CPR-E1C05S, mRNA seq AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CGGCCGGGGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCGTCACTGCAAGGTGGTCCTCACAACCACCAGATTGCAGCCCTTGCTGTTGCTCTGCAGCAAACCATGACACCTGGATTCAAGGCCTACGCAAAGCAGGTCAAGGCCAACGCTGTCGCCATTGGCAAGTATCTTATGAGCAAGGGCTACAAAATGGTGACTGATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGCTTGACTGGCAACAAGGTTGAGAAGATGTGTGACCTTTGCAGCATTACACTTAACAAGAATGCTGTCTTTGGTGACAGCA | |||||||||
gi|66914065|gb|CX100913.1|CX100913 RECm1835 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): GGGTGGTGGTGTTGTGGTGTGGGTGGGGAAGTGTGGAGGGAGGGTGAAGTGGTGGGTGGTGAAGAGGGTGGTTTGAGTATGTATGTAGGTGGTGTTTGTTGGTTGGGGGTTTGTTGCGGTTTAGATCTTTGGGTGAGGTGATGGGAACACTAGAGGATAGTGGTCGATCGTTAACGGTGGGATGGGTAGGAGTGTGCTGGAGTATGGGTGTGAAGTGTAGGGGTAGTGAAGGGAATTGGTAGCAGTAGGAGAGTGAGGGCAGGTGGGAGTAGCGTGATGCGCTTGGTTGTGTAAGAGTGTTGGAGAAGTGGATAGCGAGAATGTACGTGACATCGTATCCGTCAGTAAGACTTGTCAGGGCGCGCGACCGTCGGTTAGGGGATTGCTGCCCTCATTATCTGCTTATGAGATTGGACAGCTGTTAGCCATGTACGAGCACCGGATTGCAGTCCAGGGTTTCGTATGGGGAATAAACTCATTTGACCAGTGGGGAGTGGAACTGGGCAAGTCTCTTGCCTCTCAAGTGAGAGAATCTCTACATGCATCCCGCGTTGAAGGAAAGCCTGTCCTGGGGTTTAACAGCAGTACTACAAGTTTGCTGACACGATATCTTGCTGTTGAGCCATCCACTCCTTACAACACTACCACACTGCCGAAAGTTTGACACGACACGTTTGGCACGCTATTGTCTTGAGTTAAACAAGATTACTAGAGTCTTCATATCTTGTAATAAGTTTAAGTTCGTTTTGGAGTTGTTACAGGCTTACAGCCAGTTCTACAGTACTGTAGTTTCGTTGTTTTCCTTTACTCCGACCTCCAGGAAACGAAATGGAAAAGAAAAAAAAAAGGAAACTGTTGTTGAATAAATAAATCAAGTCGTGTCAGCATGAGGAAGCTGTCATTAAATAAATTAGGTGAAACCCCGCGCATTGCTGCGAGAATTTAGTATGAAGATATACATTAAAACATTATGTAAATTATGTTGGATGATAATTTAATATGTTTGTGTTTGAAAAGCTCTTAAATTATAAAAACTATAAAGATATAGCATGTTTGCATGATGTTTAAAAA | |||||||||
gi|218491549|gb|FG957402.1|FG957402 MA_PA64s_05213 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGTGAATCCGCAGACTGGGTATATTGATTACGACAAGCTTGAGGAGCGGGCAATGGATTTCCACCCTAAGATTCTCATATGTGGTGGGAGCTCATACCCCAGGGAGTGGGATTTTGCACGGATGAGGCTCATTGCTGATAAGTGCGGTGCGGTGCTCATGTGCGATATGGCACATATCAGCGGGCTTGTTGCGGCCAAGGAATGCCGTAGTCCCTTTGATTACTGTGATGTGGTTACATCAACTACTCACAAGAATCTGAGAGGTCCTAGAGGTGGTATAATATTTTTCAGGAGAGGGAAAAACTTAAGGAGGCGTACTGGATCTTTTTCTCAAGCGGATGAGAATGATTATGACTTCGAGGACAGGATAAATTTTGCAGTTTTCCCTTCAATGCAAGGAGGACCCCATAATAATCATATTGCAGCCTTGGCGATAACTCTGAAGCAAGTAGCAACACCTGAATACAAAGCATACATCATACAAGTTAAGAAAAA | |||||||||
gi|88362401|gb|CI644477.1|CI644477 CI644477 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TATTGTGCACTCAAACAGCTATTGATTGATGGTACAATAGCTGGTTGTGCATTGGATGGTGCTGAAGGTCCACAATGGATGGAAGCGTGGGTAAGGGAGATGCCAAATGTTTTAATTCTTCCTCGAAGTGCAGACTACAGTGAAGAAGTGTGGATGGAAATAAGAGAGAAAGCAATCACGATATTGCAGTCCTTTTTCTTTGATGGTGCTGTTCCAAGTACTGCAATATCTGATGAAGATGAGGAAATTAGCGAAGCTGGAAATGAACATGATCAGCTAGAAGAAAAGGTTAGCAGTTCACCAAGTTTTTTATTCTGAGCAGCAGACAGATGAAAGTCAGTTAAAAATGGAGTACGAAAAGAGGAGAGCCATATCCCAGCATAAAGAGCCTCAAGCATCTGGT | |||||||||
gi|58658568|gb|CK047248.1|CK047248 47673rsiceh_9664.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): GACGAGGAGAAGATCTCCGCGACGTCGATCTACTTCGAGAGCCTCCCCTACAAGGTGAGCGCCGCGACGGGGTACATCGACTACGAGAAGCTGGAGGAGAAGGCGCTCGACTTCCGCCCCAAGCTCATCATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCCGACAAGGTCGGGGCGCTGCTCCTCGGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCGCAGGAAGCTGCAAATCCTTTCGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCCCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCGTCACTGCAAGGTGGCCCTCACAACCACCAGATTGCAGCCCTTGCTGTTGCTCTGCAGCAAACCATG | |||||||||
gi|88728066|gb|CI751576.1|CI751576 CI751576 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TGGCACACAATTACAATTACAGGGCGACTACTCTCTCCTCTCTGCTCCCTGCTCCCTGCTCCCTGCTCTCTCTAGAGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCANCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCG | |||||||||
gi|88401653|gb|CI588594.1|CI588594 CI588594 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): GAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTTCTTGTTGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAAGGATGAAGATTG | |||||||||
gi|88226227|gb|CI226143.1|CI226143 CI226143 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TAAGGACAGATAATTTTGTCATTCCANATTTGTCCCACCCTATTTGGGAGCCCACGGTCCAATGAAAAGCCCCGGAAATTACAAGATTGCAGCCCATCCATCATCCAATTGGCCAACTATATTGGCCCTTACACCGGTGGATCCGTACTACAGAAGCGTTAAAGCGCGTCCACCGAATCTGCCAACACTTACGTTTTCGCGACCGCGGCATATGCGCGCACTCGGAATCGTGGGCACGAAAGCGGAAATCCACTCGCCGTCGACGACCAAACCCAAACCCAACCCAACCCAACCCCCCATCATGCGCGCACAGTGAGATCGTGTCCGGCACCGGCCACCGCGTGCGCACCTCCGCACCCCGAGTCGAGTAAACAACACGAGACAAAACAAGCCCCACTGGGCAATGCAACGCAAATGCAACGGAAGGCAAGTTGTTCTTGTGGGCTGTGGCTCTTAATTCGATGGATGGCTAGCTGCTCAATGCGTCCCAAAAAGGGGAGAGACAAAAGAAAGGAAAGCAAAAAAACTGTACATGTTAATGCGGTGTGTGTCATTTCCACTCC | |||||||||
gi|86832567|gb|CI339307.1|CI339307 CI339307 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CGATGATATGAACTACGACATTTCTCTCCATTCATGCTTGCTGCAAAATTGACGTCTCAAATAGCTCCAGCAGAAAATACAATCTAATAAGGGTTGAACGACAGCAAGCAAGAAACCATATTTGCTAGAGGCTCACAGCTGACCACAAGGAACAAAAGTAACACCTACATTACAACTACCACTGCAACTGCTACAACTACCAGCTGTTTCGTGACGGTCGATTAGGGCCCCGACTTGGCAGGCACCCAGCCACGGGATGGCAGCCCTATCCTTTGGTAGG | |||||||||
gi|218497910|gb|FG969587.1|FG969587 MA_LYP9_08371 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): ATTCCGGCGGGAAGATGAAAAGAAGCAAGAATCGCCGCCTCAGATCCACCGGCCTCAGGTGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCATGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGTGAGCTCGCTGCGTGCCACAAAGCAACTTCAGTGGTCGATATTGCCTTGCTCCGGTGAGAGGCGGTTTT | |||||||||
gi|218501155|gb|FG965819.1|FG965819 MA_LYP9_04603 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGAGAGAATAGAGAGAGAGAGAGAAGCCATCAGCCATGGCGTGCTGCTTCGCCTGCCTGGGCGCTGGCGGCGGGAAGATGAAGAAGAAGAAGAAGTCGCCGCCTCAGATCCCACCGGCCTCAGAAAGAGATAACCCACCAAACCTGGCCTCATCGACAGTGATGAAGCAGGATCAGGATTCGTTTCAATTAGCTGCTAACGAGGACATCCTTGTGAGCAATGGATCATCCGAGAACCGCCGCATTGCAGCTCGGACCTTCACCTTTAGGGAGCTCGCTGCGGCCACAAGCAACTTCAGGGTCGATTGCCTGCTCGGTGAGGGCGGTTTTGGAAGAGTGTACAAAGGCTATTTGGAGACTGTCGACCAGGTTGTCGCAATAAAGCAGCTCGATCGCAACGGACTGCAAGGCAACAGGGAGTTTCTTGTAGAAGTTCTTATGCTCAGCATGCTGCACCACCCAAATCTTGTTAACCTTATTGGATATTGTGCCGATGGTGATCAGAGGCTTTTAGTTTATGAGTATATGCCATTAGGTTCTTTGGAAGACCATCTTCACGATCCTCCACCAGGCAAGTCACGGCTTGATTGGAATACAA | |||||||||
gi|89168671|gb|CI038523.1|CI038523 CI038523 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TTGGAACTTTCTAAGCAGGTTCCTTCACTTCAGTATCCAGATGCTCATGCATGTCAGTACATGGAAAGGGAAAATCTCTCATCTTTTCCTAAGGTTACCCTGATTCAGCAATTATGCCAAGGATGATACCCCTAGCTATTCATCTTTTGCATTTTGGTCTTCGTCTTAGAAACAATGAAGTCATCATCGTCATCATCTGTGTCACTGCTTGCCCTCCTCTTCTTCTGCGCGGTAGTTTTTCCAGAATCCTTTACGGCTGAGTTGGTTTTTGTAGCAGATGACAACTGTGGCTTTTTGGTTGGAGTGTCTGGCCTTCTCTTTGCAGAGGTTGTTTTCACTGGCGACTTCAGTTTCTGGCCCTGTTTCTTCTCAAAGACCTTTTGAGCCACATCCACTGGGAGTAAACCCCATTCCATCAACCAGATTGCAGCCATTTCACTAGTGGGCACCTGCTCATAGAGCGATTCATAGAATATCCTCAGTGGATCCCTTTCTTGAGGAGGATCATGCTTCTGGCCTGGCAAATCATACACCTTTTTCTCTTTCTTC | |||||||||
gi|88478907|gb|CI416178.1|CI416178 CI416178 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): AGGATTATTATGTTCTATAGATTAACATACCACAACCGGCTGACGGCCAGCGCCATAAATTAACATATCAGTACTAAGAACAGATGATAGAACAAGTGTAACAGCTAACAAAGTGTTCCCACATAAAAGACCAAGATGTGTGTCAACTACTATTAGCTTCCCTTTCAAAATTTCCCTTTCAAAATGGTCACCAGCAGCCTCCCTTCCAAATTGCTACAGTTGCCCAACAGTCCCAATCCACCTCCAGATTGCAGTCCCTTCATACCAAACCAGTTGCAGGGCCGAACTGATAACAGCCTGACATACTTTGGGATACAACTGAGCTTAGCACATCTCTGTCATAAAGAGTATCATGAGGGAGGTAACTTATGAAATCAGAGCCACCGACGACTGGCGCCAAACTGCATGCAGAAGGGAGGGGTGCAGACGACACGAT | |||||||||
gi|86906428|gb|CI294551.1|CI294551 CI294551 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TATCGGTGTCGTAAAAAGCCAGCAACCTGTTTACTTGAAAGGGGAAATTGTGAGCAATCATGACGAATTGATGTCCAATTTCTTTGCTCAGCCTGATGCGCTTGCTTATGGAAAGACTCCTGAACAACTGCATAGCGAGAAAGTACCTGAACATCTTATCCCTCATAAGACTTTTCAGGGCAACCGACCATCGCTTAGTTTATTGCTGCCCTCATTATCTGCTTATGAGATTGGACAGCTTTTAGCCATCTACGAGCACCGGATTGCAGTCCAGGGTTTCCTATGGGGAATAAACTCATTTGACCAGTGGGGAGTGGAACTGGGCAAGTCTCTTGCCTCTCAAGTGAGAAAATCTCTACATGCATCCCGCGTTGAAGGAAAGCCTGTCCTGGGGTTTAACAGCAGTAC | |||||||||
gi|88476441|gb|CI413712.1|CI413712 CI413712 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CCAAACGGGGCAAATAACTAGATTTTGATTTCAGAAACAGGCACAACGGGTAAATGTTTGCAAGCTCACACCGTACTACCGTGCGCATTGTGAAAACCTGACATTGAACATGGCAAATACATTATTGGTTTCTGAAGTCCTCGGGGCCTGGCACTTGGAACGAAAATACTCGCTGAACTCCAGGACACCATGGACTCAAGGTCCAGTCTCTGAACTGATCAACCTCCTTGTGGAGCACCAAACCTGTAGCTTCATAACCGACCCACTTGATGATGATCCACGTTCCANAACAGCTGAGCTGGGCCATAGGATTGCAGCCTTATCTTCTTCCAGATATCGCAACCAGAACTGCAGTTGTCCTGCCACGCAAAATGTGTATGCAAAAACAACTGGGTGGTTGTATCCTGG | |||||||||
gi|58652866|gb|CK041546.1|CK041546 45607rsiceh_15553.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGAATCGGCACGAGGCCTTCTGCCGCCAGGAGAATGGATACTCTCAATGATTTGTTGGCAGCAAGTGACCTTGTGGCAGTGCACTGCACGTTAACAAATGACACGATGCATATACTTAATGCTGACTGTCTGCAGCATGTAAAACCTGGAGCATTCATAGTAAATACTGGAAGTTGCCAACTTATAGATGATTGTGCACTCAAACAGCTATTGATTGATGGTACAATAGCTGGTTGTGCATTGGATGGTGCTGAAGGTCCACAATGGATGGAAGCATGGGTAAGGGAGATGCCAAATGTTTTAATTCTTCCTCGAAGTGCAGAATACAGTGAAGAAGTGTGGATGGAAATAAGAGAGAAAGCAATCACGATATTGCAGTCCTTTTTTTTTGATGGTGCTGTTCCAAAGTAGTGCAATATCTGATGAAGATGAGGAAATTAGCGAAGCTGGAAATGAAGATGATCA | |||||||||
gi|218496249|gb|FG947896.1|FG947896 MA_93-11_04791 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCGACTTCCGCCCCAAGCTCATCATCTGCGGCGGCAGCGCGTACCCGAGGGACTGGGACTACGCCAAGCTCAGGGCCGTCGCCGACAAGGTCGGGGCGCTGCTCCTCTGCGACATGGCGCACATCAGCGGCCTCGTCGCCGCGCAGGAAGCTGCAAATCCTTTCGAGTACTGTGATGTGGTTACCACCACCACGCACAAGTCCCTCCGAGGACCAAGAGCTGGCATGATCTTCTACAGGAAGGGCCCTAAGCCTCCCAAGAAGGGCCAGCCTGAGGGTGCTGTCTATGACTACGAGGACAAGATCAACTTCGCAGTGTTCCCGTCACTGCAAGGTGGCCCTCACAACCACCAGATTGCAGCCCTTGCTGTTGCTCTGCAGCAAACCATGACACCTGGATTCAAGGCCTACGCAAAGCAGGTCAAAGCCAACGCTGTCGCCATTGGCAAGTATCTTATGAGCAAGGGCTACAAAATGGTGACTGATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGCTTGACTGGCAACAAGGT | |||||||||
gi|218493758|gb|FG945373.1|FG945373 MA_93-11_02268 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s AGGGCTGCAATC-TGGTGGTT EST sequence (targeted fragment marked with yellow): AACCACGCGGTGGCGGCGCTCTAAACTAGTGGATCCCCGGGCTGCAGTGGAAAGTGTCTGCAGGGACATGAATCTCCATAGGGGCCGAAGAGCTTCTAAAAGAACCAGGATCAGATGGTTTCTGATTATGTTGTCATGTTCTTTAGTTTGTCACCTCTGGTGAAATCCAAAGGAGGGCTGAGTTCTTCGAACCATTCATCTCTGGCTTGACAAATTCGACTGTGGTTCAGTTCTGCAAGGCTTCCGTGGAGCCGATGGGCGAGGAAAGTGACCATGTCCACATAATTGCCCTATCAGATGCGTTGGGTGTGCCAATCCGTGTGATGTACCTAGACAGAAGCTCATGTGATGCTGGAAATATAAGTGTGAACCACCATGATTTCAGCCCTGAGGCCAATTCATCGGACGGTGCTGCTGCTGCTGAGAAACCTTACATTACTTTGCTCTACCGTCCTGGTCACTACGACATTCTCTACCCGAAGTGATTCTTGCCCGGTGAAGCATTGTTGGTTTTTTCCTCATGGCCAGTTTGAGAAATCGCTGTCTAGAACTCTGTAGTTATGGTGCTCGTGCATGCCACCAAAGGCCGGCCTTACAAAGAAAAGGACTTGTGCTCTTGGTCTTGGGTGGTGAACTGGTGATCAAGGCATGCTTTGCTTGCCACT | |||||||||
gi|86906388|gb|CI294511.1|CI294511 CI294511 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): GATGTTACTGTCCATCAGCTGAAGTGTCAAAGAGAGCACTAAAAGCTGGATTGCAGCCCTCGCAAATTAAAGTCTATGGCCTCCCAGTACGTCCATCTTTTGTCAAACCTATTCGACCAGAGGATGAACTGCGAAGGGAGTTAGGTATGGATGAATATTTGCCTGCTGTTCTACTAATGGGTGGGGGGGAAGGGATGGGTCCTATTGAAGCCACTGCTAGAGCACTTGGTGATGCTCTATATGACGAAGTCCTTGGTGAACCCACTGGTCAAATACTTGTGATTTGTGGCCGTAATAAGAAGCTGACTAGCCGATTGCAGTCAATCAATTGGAAAGTTCCAGTTCAGGTTAAGGGTTTCGTTACAAAGATGGAAGAATGCATG | |||||||||
gi|89188064|gb|CI115313.1|CI115313 CI115313 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): GAAATACTCGCACAGACGGTGCGAAGTTCTATTGATAGAGCAGGAAAAAATTATAAGATTGCAACCCTGGAGGGTCGTAACCAGGAAAAAGAAAAAATAAACCACCACCCACACACCGACAACGCCTAAACACAAGTCCGGGAGAAGGCTAGCACCATACCGGCCGCCGCTAAGCGTGACCGACCGCCGCTAGACCAACAAAGGAACACAGACGAGATCGTCAAGCAAGAGGGTGCCAAAACGACGTTTACAAGAAGAGAAGCGACGGAAAACCGCCGCCGCCGTCCGTCAAGGATCAAAGGAGCCAGGACTGGGCTTTCCCCCGGCAACCACCCTTGAGGGGCGAGACAGCACGACAACGCCCTCAGGAGGGGGAATTAACCATTGTTGTCGGTCCGGCCAAGGCCGGGCTGGGTTTCACCTGCCGCTCACCACCTGCGAAACCACGGCTGACACAACGATGCTCCACTGACAATCAACCTCTGTCGACATGTG | |||||||||
gi|89197193|gb|CI051923.1|CI051923 CI051923 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTAGTGAACTACTCTATCAATATCTTCTACCGNTGACATATGACATTGGTGCTAATTCTATCTTCTCAAGAATAACTGAAAGGTTTTCTTTTTACAGGTAGAGCCTAAATAAATTTAGAAACTACGTGAGCATCATGCATATGTATGCATCCATAAACCACCAATTGCAGCTTTGCAGGAGCATCGTTGCTCCAACTCCAGCAGTGAGCCTATATCCAGTTGTTCAGTGAACTTAAAGCCTCATATCTGCAGGTCCAGGACCAAGGATGCCTTTCTCATTATCCGCAGGAGGAAGTATATCAGTACGTGAGACCCTTCCATCGTCCATTGATGCCTGCTGCGTCCAGAGCCATTCCTCTTCTTGATCATTCTCAGGATCATGCAATTCGGGTGTTACAATTGGTGGCATTGCATCTGGGTCAGGCTTCTGGAAAACAAAAGTTGAATACAAGCCTAAAATATCAAACGAACGAGCGACAAGCTTTCCACGCGG | |||||||||
gi|44674173|gb|CR287607.1|CR287607 CR287607 Oryza sativa library (Han B) Oryza sativa cDNA clone p761d09p3, mRNA sequence AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTGGACGACTTGAATGCGAAGTTCTATTGATAGAGCAGGAAAAAATTACAAGATTACAGCCCTGAAGTGTCGTAACCAGAAAAAAGGAAAAAAACCACCACCCACACACCGACATCGTCAACACATAAACCCAGGAGAAGGCTAGCACCAGAACGGCTGTCGCTAAGCGTGACCGACCGCCACTAGACCAACAAAGGAGCACAGGCGAGATCGCCCCCCTAGGGGATGCCAAAACAACGTCTTCAAGAAGAGAAGCGACAAACCGCCGCCGCCGTCCGTCGGAGCTCAAAGAAGCCAAGACTGGGCTTTCGCCCGGCAACCACCCTTGAGGGGTGAGACAGCACGACAACGCCCTCAAGAGGGGGAATGAACCATCGTTGTCGGTTCGGCCGAGGCCAGACTAGGTTTTCACCCGCCGCTCACCACATGCGAATCCACGGCTGACACACCGATGCTCCACCACCACACAAGCTCTAACGACATGTGGAACCCCTGCACCGGCGTTCCCCGTCGGACAGTCTACGTGCGCCAAAGACCGGGCCACTCATAACGGACGTTCGTCCCAAACCAAGGTGCCTACTCACGGGGGGCGGGCCAACGGGCCAACGAACCCCCAAGGGAGGGCCCAGGGAAGACGAACCCCACAGGGCGCACCTGGGCAAGAGGGATACCGGGCGGCCACGCGCGGAGACGGAGGAGGGATCTGCAGAGAGCACACCACAACGTGGCAGTATCCATCATAGCGGCAAAAAACAGCAAATCGGGCAGGGTACTCTA | |||||||||
gi|86595009|gb|CI258263.1|CI258263 CI258263 Oryza sativa (japonica cultivar-group) same as Lib 23(supermix) Oryza sativa Japonic AGGGCTGCAATCTGGTGGTT EST sequence (targeted fragment marked with yellow): CCTGAATGACTCGCACAGACGGTGCGAAGTTCTATTGATAGAGCAGGAAAAAATTATAAGATTGCAACCCTGGAGGGGCGTAACCAGGAAAAAGAAAAAATAAACCACCACCCACACACCGACAACGCCTAAACACAAGTCCGGGAGAAGGCTAGCACCATACCGGCCGCCGCTAAGCGTGACCGACCGCCGCTAGACCAACAAAGGAACACAGACGAGATCGTCAAGCAAGAGGGTGCCAAAACGACGTTTTCAAGAAGAGAAGCGACGGAAAACCGCCGCCGCCGTCCGTCAAGGATCAAAGGAGCCAGGACTGGGCTTTCGCCCGGCAACCACCCTTGAGGGGCGAGACAGCACGACAACGCCCTCAGGAGGGGGAATTAACCATTGTTGTCGGTCCGGCCAAGGCCGGGCTGGGTTTTCACCTGCCGCTCACCACCTGCGAAACCACGGCTGACACACCGATGCTCCACTGCCAATCAACCTCTGTCGACATGTGGGACCCCTGGACCGGCGCCCTCCGCCGGCTAGCCTTCGTGCGCCGAAGACCGCGCCACACCCACTGGCAGCTCCTCCACTCACCAAGGTCGCCTCCTCCACCGGCGGGCGCGCTTCTCGCGCCGAGCCGGCCTCCGCTGCCATTGGCTGCGCCTCTCTGCGCCAAGCCGGTCTCCGAACCTTCCTCCAAACGCTGCTGCGC | |||||||||
gi|88356471|gb|CI624891.1|CI624891 CI624891 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J AGGGCTGCAATCT-GGTGGTT EST sequence (targeted fragment marked with yellow): GTGACCTAGTCGATGCGATCCTCCATCGGTTCCCTTCTCGTCTGGTGAGTCCGCCTGGCCGCCGTCTGCGCCGAGCGGCTCCGCCGTCGTTCCTGCAGCTTCCGCCGCATCCTCGCCGCAGCTGAACCCCTCCCATCCCATGCCCTACGCTATGTCCGCCCCTGATATTGCGAGGATGCCGCTGGTTCTGTTTAGGCAGGGGACAACGGATTCCCGTGATACCTATGTTGTTGGATTGGAGTTTCCCTGCATCTAATCGGACTCAGAGTTTGATGGCGCGTCCTCGTTTGGTTTTCTATATAACTCGTTCCAGGGGGAGCCTGCCCTCTCTATCAAACCTCCAAGATTGCAGCCTTTCGCGGTGGTCCTGCACAAGCAGTTCATCTTCCAAGAGATTGCACCTCTGCCAGTATTC | |||||||||