| mature miRNA: AGGTGGCGTTGCAGGAGACA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52383161|gb|CV230055.1|CV230055 WS01915.B21_E16 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01915_E16 3', mRNA sequence AGGTGGCGTTGCAGGAGACA EST sequence (targeted fragment marked with yellow): GAGTTTTTTTTTTTTTNTTTAGAGTGCAAAAACTTATCTTATAAAGAATAGTGGAAGTGAATTCATACATGCTTACTTTCCTCAATAAATAATGATCAAGAGATTTACTGTATCAAGATAAGAACCAACATGGGCGTAATTCCACAAAATAGCTTATCATTGGCATGGTTTGTTGCCAGTTTGCAGACACAGCAATGGAAAATGTTATGACACCAAAACTTTCAATCATATGACTGGAGGTGGAAAACTTGGCAGGCCGGCTTATATGACTTCTTCAATGCCGCCTGCTCAAACTTCTTTAAGGCAGATTCATTCTCTTGTAAACCAGTCTGAACAAAGTACCTTATCCACCATGTTGAGGTCCGGAATTTGGCCGGACGACCAAACTTAGACAACTCTGCAACTTTAACTCTTTGCTGACCTGGAGCGCCAGAAAATACAACTAGGCCATCAGCAGACACCCTTGCCAGTTCTGGAAGTGTTTTGTTGAGATATTTTGGAGACAAGTAATCCAACGCATCTGACACTATAACAAGAGAGAATGATTTTGGCCGGTAGGGCAGAGGAAATTTGATATCAG | |||||||||
gi|73873474|gb|DT476212.1|DT476212 WS01228.B21_L20 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_L20 3', mRNA sequence AGGTGGCGTTGCAGGAGACA EST sequence (targeted fragment marked with yellow): CCTGTCAGTCCTGGCTCTTGCCCTTACCATCTGTGTGCAAGGTACTCTAGGAGAAATAACTTGTGAACATCTTGACCAAGACACATGTGCCTACGCAATCTCATCGTCCGGCAAGCGTTGCGTGCTCGAAAAAAGTGTAAAAAGGACCGGAGAAGAAGCATACACTTGCCGCACATCTGAAATTGATGCTGATAGATTAAGGAACTGGATTGAAACAGACCAATGCATCAAAGCATGTGGACTTGACAGAAAGTCACTTGGAATCTCATCGGATTCTCTCCTTGAGTCTCGCTTCGCACAACAACTTTGCTCTCCTCAGTGCTACGATAGCTGCCCTAACGTTGTCGATCTTTACTTCAACCTTGCTGCTGCTGAAGGTGTGTTCCTCCCCGGATTATGTGAGGCACAAGAGGGAAATGTCAGAAGAGGATTGATGGCCGATATCAAAAGTGCTGGTTTTGTTGCACCAGGACCAGTGAAGGCAGTGAAATACGCATATGCCCCAGCACCAGTTGAACCAGTAACATACACAGATGTTTCCCCAGCAATGCCACCTTATTAATTAACCCTTATGCAAGGGATCGAAAGCAAAGGAAACAAAAGTACACATGCAGATATTAGCAAGTGACAATAAGGGAGTAGTGGCACCAACCAAGATTTCAACAGCCGGCCGGCCTTGAGTAGTCCACCATTAATTAGCATGATGTGTGCATACTAGCATGTGCTGTGTTGGTCATTTGAATCAATAAGGTCTTACCCAAATGTCTTAATTAAAGGTAGATTTTGTGAGAAATGTTTGTATTACTTACTTTATGTTCTTGGTTCATCCTCCAAGCTAGTGTCATGTCTTTGCCTATGAGCAATCCATTCAGTTGTAAGTCATTGGCAACCTTTTCTTTTCGATTGTTTTATAAATACAGCCCAACTTTGTC | |||||||||
gi|73897293|gb|DT500031.1|DT500031 PX0011.BR_A04 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_A04 5', mRNA sequence AGGTGGCGTTGCAGGAGACA EST sequence (targeted fragment marked with yellow): ATACTTTCTGAACCCTTGAAAGCCTCAAAATTGTTAAGACTCTTGCACACAAATCCCAAGCTCGTGAAAGCACAAATGTCCCACCACCATTCCTCCTCCCCTTTTCCTTCTTGCTTCCGCCCTTCCACCGACACCGACATCCACCACCTTCCTCCACCAACACCACCACCTGTCTCTGGCAACGCCAACCTCACCACCTGTCTCTACCAAACTGACCTTGGCCTCTTCTCCCTTACTTGGTCAAGTTCCTTGTTAGGCCATTCTCTTCACCTCCGCCTCCACCCCATTGACGACAACGCCAGCTACTGCTCTCCTGTTTCTCTATCTAACCCTCTTTCTCTCTCTACCATATCTTTCCATCTCAATATCAAACCCTTCCTTTTCTGGAAAAGACATGGATCCAAGAAACTCCATGTTATTAACCAGGAGCCTGACACTCCAACCCCAAGGATCCAGATCTTTTGGGACCTCTCT | |||||||||