| mature miRNA: AGTACTCTCTCCGTCCCATTT species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190138828|gb|FG636157.1|FG636157 TT-11_N13 Samsun trichome library Nicotiana tabacum cDNA, mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): ATATCAATGAAGATGCACTCCTGAGTCATAAAGAGTATGAAAATTTCTGTTCTATAAGCAAACAGTTTGTTCAGATTGAAAACCAACAGTCCAGTCTGTTGAACCTCCTCCAGGGATTTATCGGCAGCTCACGAAATGGAATGAGTTCATTAGAGAAACGTGTAAATGGTTTGGAGAGATTACTTGATGAAACGCAGCACGATTTGGGAATAACAACAGGGAGGATTTCAAATACCGATTTTACAGGAAGTACATGTTTCATGCTCCCTCGTGCAGAATTTTTGAGTCCTAAATTTTGAAGAAGTTCAGAAGGGCAAAACTCAATTTCAAGAATATCTTTCTCCACTGGAAGCCAGAATACCACCATGTATAGTCAGCCAGAAACAGATGCTACCACCAAGATGTTGAACCAGGAAAATTTGATGGGCCAAAAGCAGAATAAGAATTTATCTTCTCTGAACCATATGGGTGTCACTCAGAACGAACGCAACTTATCATTACATTCCAACTCCAATAGAAGAAAAGAGAGAATAGCTCGAGATGGTGAAAGTGCAGGTTTTTGTCATGTTGGTAGGCTTACCGGGGCTTCATTTGCAAATTGCATACAGCAGCAAACTTGAGCACTAGGTCGTGCGGACAAAAAAAGCTCGAGTCTCAATGCTGAACTATTTGGGCAGAGAATCTTTATCCCATCAGNNNNNGGGTGGATGGGACTAGAAGGAANNNNNGATTAAAGCGAATTGTTGTGAAGA | |||||||||
gi|156704867|gb|AM781634.1|AM781634 AM781634 COL, cold overnight library Nicotiana tabacum cDNA clone nt006033052, mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): CTCATGCGGCCGCTCCAATTAAAATCTCCTCTAGAAGCAACAAGGTAGAGAAAATGTATTGCAACCTATCTGCATGTGTAAATATCAGAGTGTAACCACATGAGAAGCATTTTAAAGGCGACAAGAGAATGCAAACCTGAGATAGTATCCAAACATGAAGTAGTAACATGGGATCCTTCTATATTTAGTACAACAAGTTTGTTCAAACCTAAAAAATCGAAAGGAAAGAAAATCTCAATATATAAAGGAGAAAGACTATAAAGACAACAACCTTAGATACTTACATAAGCACAGTAAGAAAAAGACTGTATGACACTCTTATTTTAGATGTTCTATCTATCAAACTAACTTTTCCACTGTTTTTTCACTATCACTAAAGTTACACAAGTTGAAGTACCATCATAAAATCCGTGTAAGTCCAACACCATCTTATAAAATGAGACAGAGGGAGTACTTAAAAGGGGATAACTGAAAAGGCACAACTAAAGGTATATCGGAAAGGTAGTTTAAGGGATACAGTAAGAAAAAGACTGTAAACTCTCAAGATCAAGTTGGCACTGAATGTCTGAGTCTGTGACA | |||||||||
gi|156685334|gb|AM834080.1|AM834080 AM834080 DL, diurnal library Nicotiana tabacum cDNA clone nt005122011, mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): TGCGGCCGCTTTTATATCAAGTCACGAAACTTCTAACTTTATTGAAATTCATTTTTACACACATTCAACTTCAAAAATCTTTTTTTTCAACTTCAATGGAATATTCTCCAAACAAACCCAAATCTTGATTTCCAGAAAAGAATATAAAAGAAAACAGGAGAAAATGTGTAAAAACAAGAAGCCATTACTCAATTGCATTCATGGCTTTGTACATTTTAGAGTCGAGAAGAAGCTTGGAAGGAGAAGTGAGAAGGCTGCACAAAGTGTTTAATTTCCAAGAAGAGAACGAAGGTTTTCACCTNGATTGATGCTTATGATTCGAGATCAATGGACTTCACATTTGGAAAGCAGCAACTGATTTGACTCTTGAAATCCGAACTGCGCCACACAAATTGGGACGGAGAGACTACTTAATAACTTGTCTTTCTTTTTTACTTGTCGAAGTAAAATCATCTTCCAACACAGTGACAGTACCTTCAAAGATATCAATGTCTAACAAGAAAATTCACAATACCAACA | |||||||||
gi|32876892|gb|BP134007.1|BP134007 BP134007 MAT001 Nicotiana tabacum cDNA clone BY6336, mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): TCTTCTTTCTATTCTTAAACTTTGTGCTCGGTCAAACACCTGCACCATAAATTGGGATGGAGGGAGTACTTCAATTTCCTCGTGCTTCCTAGATGTTAAAGGAGGAGTGTAAGTTTTTGATGCGTACATATTTGCACCTTCTTGGTGCCACTTGAATAAAATGAACTCTCTTTTCTTATCCACCAAAAGAGAAAAAGATCCACCGACTGTTAGAAATTGTATTTCTCATATTCTCTCGCAAACAAAAGCAGCATCAGAAAAACCGAGACATTAACCCCGAGATTCATGTCTCAGAAACACTACGGACAAATTTTCAAGTAAACCCTTTATAATTACAATTTGGTACAGAGGTGGTCCAATGAGAAACTCTTATATGTCATAAATATNACAAGCATAACGCACAAAAGAAAGAACTACTATTGGTGACAGGACCATTAAATCTAAGGAGGAGCTACCGT | |||||||||
gi|52832788|gb|BP529061.1|BP529061 BP529061 MAT001 Nicotiana tabacum cDNA clone BY13942, mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): GAAACTTGAACCAAAACTTGCAACTGTAACTAAAAACATCTGACATTCTAAAATTTTAATTCTAAACTATAGACCACAAGTTTGAAAAACCGCCTTTCTTTAGGTAAGCTAAGTGCCTTGTCAAACAGTGGCCACATAAAATTGGATGGAAAGAGTACTAAATACCCAAAAAACAAAAAATCCCATTTCACATTTCAGCACAATTACAAAGAACAAATAGGAATACACACATCGCACATCTATTGTGTGAAAAATTGAAACTTGAAATCAAACTTGCAACGTGTAACTATTAAGACATTTACAAAGCAGTATGAAAATGAAAATGCGTTGCAAGTACCTAGAAATTAGACGGTAGAATTGATGGTAGTTTGCATCAAAAGATTCTCCCAATTTTTTTAT | |||||||||
gi|254610740|gb|FS409908.1|FS409908 FS409908 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR002 AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): GAGATGGGTTTTTTCCTTTCTTTTGTAGTCAGCAGCTGAATTGGCAAAGGATCGCATTGTTATTGGTGTTTGTGATGGTCCGATGTTGACTAACAAACAGGTGATTCTCATGCTTTATACTCTGAAGGCAGTTTGTTTCTTGATATTGTACCGATTATAGAATCAACCTCACTTTCCTTGAAATTTTGATTTTTTTTTCTTGGGAATACAGTAGCTAATGGCAGTTTTTCCAGATATTTTTTTCCTTATTGGTTGCAACTCTTCAAAATTTTGCTCCATCCATCTAAGGTGAATGACAGGGTTCAAAGTATGAGAGTTAAAAGACTTGACTTTCTTGCAAGATTTAGAAGTAGTGTCACCTAAAATGGGATAGAGGGAGTATGTGAAAAGGATTTCTTATAAACTAGTTTTTTACTTTTATAATTTTCTTACTTGGCAATTGACCTTTATCAAGATTTTAATCAATGACATGTGGAAGCTTTAAAAATTGCTGTTAGAACTTCTTTTAAGGTACACGAATTCAAGCATAGGGTTCTTGTTGGAGGCCACTCATATTTGAGAAGCGAAAAGAGGGCCCATATGCAAAAGAAAAAAAAAGGATCTTTTGTGTACTTGTTGCCTTTTCCCCATTCATGAGAGGCAACATGTA | |||||||||
gi|190741146|gb|FG179453.1|FG179453 AGN_PNL201bf1_f12.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): GGGATCCTTTATACTTCGGCTGAGAGACTAACAGATAACTACAAGAGCAGAAATGGGGGAAAAGGGCCAGACCTATATCTAAAAAGGGAAGATCTGAACCATGTTGGAGCACACAAGATCAACAACGCTATTGCACAAACAATGTTGGCTAAACGCATGGACTGTAAAAATATCATAGCAGCCACCGGTGCTGGCCAACATGGCGTCGCGACGGCGGCTGCCTGTGCTAAACTCTCATTGGAGTGTACTGTATTCATGGGAAGCTTAGATATGGAGAGACAACCTTCTAATGTAATCTTGATGAAGCATCTTGGTGCAAAGGTACTTCTTCTTTCACAAAATTATTTAAACTTTTTGACATCACTAACTCTGTCATTTATGTGACACTTTTTCGATTTTTGAGATTTATAACCTTGTATTTGACATAATTTCTTTAAGTTTTTTGAAAACTATGTACTACAAGTTAAAATAATTATAATTTAAAATATTCAAAAGACATAAAAAAATTACCATTAAAGAATAATTGATTTTGATTCTCGAAATTCGAACATTATTACTTAAAATTGGGACGGAGAGAGTATAATGGTAAAGTCATAAATCAATTTTTTATCTCAGTCAAACAACTGAATTATGTCTAAAA | |||||||||
gi|190883162|gb|FG140715.1|FG140715 AGN_ELP020xk06f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence AGTACTCTCTCCGTCCCATTT EST sequence (targeted fragment marked with yellow): CCATACTTTAACCTGCACCGATTCGCTAACCTACGCCATGAGCATACTTGACAAGCTTTGGGACGACACCGTCGCCGGTCCCCGTCCCGATAGTGGCCTTGGCAAACTCCGAAAATCTTCCACCTTTAACTTGGGCTCAAGTTCCGGCAAGGAAACAGAAGGAAGTCAAGAGGTGGCTAGGGTGACAAAACGTATAATGATAGTAAAGCCTCCAGGATATGTGAGTAAAGACTCTCCTCCAGTTTCGCCTGCCAGTGCCGGTTCCACTCCTCCGGTATCTCCCTTTGCTGGTATGCCTTAATTTCAGCTTGTTGTTTAATTTCAGTGTTTGTTTATAGCCGGGCGAAGATGTTTCAATGTAGTAGTTCAGTAGTAATGTTAACTCATTTATCTTGGCACGGAGTTAAAAAAAAAAATGAAGATTTTTTTTAATTTATGGTGCTAAAAAAGTCAAGAAATGATCAAAATTATTTGTATAGTTATAAAAGCTTCTTAGCTAAATTATTTTTAAATTTAGAGAGATGTAATCCTTCCATTCCAGTTTATGTGAACATATTTTATTTTTGGTCTTCAAAAAGAATGATGTATTTTTAAATTTGGAAATAATTTAGTTTAAATTTATAATTCTGCATTTAATTAGAAATTTGTATAACCATACAAATATTATGGATCACTTTTTGACTTGTTTAGGACCATAATTTCAAAGTTTTTTATTTTTTTCTTAATCTCCGTATCCACATGTTCATATAAATTAGACGGAGAGAGTATTCTTTTAGACGATCAAAAAAATAATAGTTTACGTTAC | |||||||||