| mature miRNA: AGTCCATTTCCTGCCCGAAA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73886862|gb|DT489600.1|DT489600 WS02542.B21_K18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_K18 3', mRNA sequence AGTCCATTTCCTGCCCGAAA EST sequence (targeted fragment marked with yellow): GCAACTTTGTATTTAGTTCATCCATTTGCTTCATCAATCAATCCCCATGTTTAGCCCCTGGGACAACTGGGATTGCGCTGACAAGACCCAGTGTGTCAAGAAGGGAAGCAGCTACCCTGCTGACATCGTTGAGACTGAGAAGAGCCATGTTTACCCTGGAGTCATGGAGGTTCCAGCAACCGAGAACGATGGCAAGTGCAAGTGGGGCGCTAACTGCACTTGCCCTACCTGCCCATGCGGTCATTAAGCACGTATTAAGCACGTAAACCGTCATGTGTGTGGGGTAGGGAGTGGACTAATAATGTAATTTGTGTCCTTTTGCTATAGTACTTGTGGAAGGGAAAAAAAAGGTGATAATGAGTGTTTTATGTTTATGTTTTTTTTTTTTTCAATGTTATGTAAGGGCCATGTTTATGGCCTTAAGTGTGGTTTAATGGAATATTTTTGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73871527|gb|DT474265.1|DT474265 WS01231.BR_F24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01231_F24 5', mRNA sequence AGTCCATTTCCTGCCCGAAA EST sequence (targeted fragment marked with yellow): TAAGAAACTGGGTTCTCCACCTGCTATACTCCTAAATTATGGTCACTATAACCCCAAGTTCCTACCACTAACAACCAACAAATGCAAAAAAGAAAAATTATCAAGTCTTTTGGATGCTTCAAATAAGAATTATAGCAGTACAAAAAAAGCACTACAAGTAGTGGCTGATGCTGGTAATGCACCTCTATCAGAGGCCGAGCCTAGGAACCTCGGGAAAATCTTTCTGTCAGATGTGGTGGTGAGGAGAAGAAGGCAGGTATTTTGGGGCAGGAAATGGAATTCATCAGATATAGCCAATGCTGCTATAGTTTCGTCAGTGCATTTTCTATCTTTGTTCGCACCTTTTTATTTCACTTGGCCTGCATTTTGGGTTGCCCTTGGCATCGGTATTGTCACTGGACTTCTAGGTATCACTCTTTCTTTCCATAGGAATCTTTCTCATAGGAGTTTCAAGCTTCCAAAATGGCTCGAGTATTTTTTTGCATACTGTGGGGTTCAAGCTCTTCAAAGGGATCCTATTTTTTGGGTTAGCACTCATAGACACCACCACCAGTTTTGTGATTCTGAGAGAGACCCGCATAGCCCTACTGAAGGGTTTTGGTTTAGTCACATCACTTGGCTCTTTGACAATAATTATATTACTGAAAAGTGTGGAGGACCAAACAATGTTGGGGATTTAGAGAAGCAACCCTTTTACAAGTTCATGCAAAACACGTACTTTCTACATCCAATTGCGCTTGGAGTTCTGCTATATGCAGTGGGAGGATTTCCATACCTTGTATGGGGAATGGGTGTGAGAACCGTACTGGCTTTGCACTTCACTTGGCTAGTAAACTCAGCTTCTCATTTATGGGGAAAGCGAGCGTGGAA | |||||||||