| mature miRNA: AGTTGGTGCCCGTCACGGATGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29685451|gb|CB681726.1|CB681726 OSJNEf08F15.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf08F15 5', mRNA sequence AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): ATTCAATTTGCCCCTTTTCAAAAAAAATGTACTTCATTCAATATATATTGACGTGCTTTGCACGTGAAAAATCACCTCTTTTTGGAGTGCGGTGGCGGCTGGGGATGACCTCGGCTCTATCAGGGGGCAGCGCTGGACTGCGGCGGATGTGGAAGACCTCGGCTCCGTCGGGGTCTGCGCTTGACTGCAGCGGCGGCGGATGGGGAAGACCTCGGCTCCGGCGGTCACAGCGGTGGACTGCGGTGCCAGCGGCGGTGGAAGGGCACCACTAGTACAGATCCTTCTATCTGTGACGGGCTCTAATATGCTTAGAAATAGCGGGCCGTCACAAGGAAGTCATCTCAATCGGGCCGAAAAGTGCCCGATTGAGATATGGTCGCACAGACATGTTAGATGGGCATAAAACTTAAGCCCATCACGGATGACACCTATCAGTGACGGGCCGTAGTTTAGGCCCGATTAAGATAACATTCCATATCTCAAACGGGTCCATCTGTGACGGGCACCAATTTTAGGCCCGATTGAGATAACATTCCATATCTCAAACAGGCCTAAAGTTGCGGCCCGTCACAGATGACCATCATCTGTGACGGGCACCAACTCTAGGCCCGATTGAGATAACGTTCCATATCTCAAA | |||||||||
gi|117234565|gb|CT854524.1|CT854524 CT854524 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): AGAATCAGTGAAAAGAAAATGCTCACCCCAGCAGAGGTTCTGTGCAAATCTTATCCATCAGAGTTCACCTCATATTTCCACTACTGTCGTTCCCTGCGATTCGAAGATAAACCAGATTACTCTTATTTGAAGAAACTCTTTCGGGATGTATTTACTCGTGAAGGGTACCAACTTGATTACATATTTGACTGGACTACAAGCAAAAATCCTCAGATGGGTTCTACCAATAAGCTTATTCAACAACAAAGTGGAAGAATGATTGGAATTGGACCCTCTGTTGACCGAGCAGACAAAACTTCAGTGGGACAAGAGATCCGGGATAGATTTACCGGTGCTGTTGAGGCCTTCGCCAGAAGAAACCCGGGTTCCGGTCGCCTCGGAGACAATTCCAGGCACAAAAGCCTCGCGGATTCCTTTGGTTCATCTACAGAAGCTGTTGTTGATTCGGAGAGAACACGAACCATATCCAGGAACAGGAGCTCGGCGAAGATGCCCACCACCGCCGCCGCCGCCACCCCGTCTAGCCGGGGGACATCCTCGAAAGGCGACGGCGGCGAGCAGAACCGGGCCGGCCGGTGGGTGTCGAGCGGCAGCGGCAGCAACCGCCCGTCCCCCGCCGCCGCCCAGCGGCACCATCACCACCACCACCACTCGGCCGCCGCGGACGACAGGTCGCCGCCGGCAGCGAATGGGGGCACCGCTATCCGGTGCTTCGAGCGCCTCTCGATCGGCGGCGAGAGGAGGAAGTGAAGTGAGCCTCCGCCGCCCACCGCCGCCTCGCGGGATTGTTCAATGTTACTCGCATGAAAACGCCGCGCGTCTCACTCACCGCTGGACCCTTTCGTCTTCCCTGGAATTTTTTCCCTTTCCCTGTGTGTTGCTAGAAAAACACGGTGGGTGTGCACCGCCCCCCGCCGGCGGCGGGGAGGGGGGAGGGAGGCGCACCTCCACGCACAGACGGCAGCGCAACCCCGTTTAATGTGAGGTGAGGAGGGAGACGATGTTATAGCGTTTAGCTCCGAGAGAACGGGGAAGCGGGAGGGTAAGGAAAGGAAGAGCAGGGAAGAAGGTAAGGAATGTGGCGCAGACAAGAAGACTAGTAATGTGGAAGGTAGATGATGCGAGGTGTAGTGTGAGGGGCGGCGGAGTTTAGTAGACGAGAGGATAATATAGTAGGAGAATGTGCAAGCTTGTGGGCATGGGAGTGGTTGTGTCAGAATGGGGGAGGAGGGGCTGACCGTGCCGGAAAATCAGTCGTGTGGGAGTGTTCTAGGAGGACGTGGCTGCGGTTCTAGCTGGGGAGGAGGTCAGACCGGTGACAGCTCTTCGGGCGTATG | |||||||||
gi|88359984|gb|CI679755.1|CI679755 CI679755 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): TGCCAAGCTCCGCTTCAAGTGAGCTAGTCTAGCCAGCGTTTAGACACCATCACCAGCAATGGCGATCGCTGGCGTTCTCTTCCTCCTCTTCTTGGCACGGCAAGCCTCCGCCGCCGGGTACGGCGGGTGGCAGAGCGCCCACGCCACGTTCTACGGCGGNGGCGATGCTTCCGGCACCATGGGCCGGGGCTTGCGGTTACGGCAACCTGTACAGCCAAGGGTATGGCACGAACACCGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTNAGAGCTGCGGTGCGACAACGCCGGGAGTTCGTGCCTGCCGGGCTCCATCACCCGTGACGGCCACCAACTTCTGCCCGCCCAACTANGGCCTCCCCAGNGACGACGGCGGCTG | |||||||||
gi|58659571|gb|CK048251.1|CK048251 44036rsiceh_12426.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): CCGGGCTGAGGCGACGAACACTTTGGAGCCATGGCTCCCTGCTCTCTCGTCTCTTCCTCCTCCCGGCGCTCGCCACCGGGGACCAGCACCCGTCCACCCTCGTGCTCCTCCGCCCTCTCCGAGTGGCGCTCCGCCAAGGCCTCCTACTACGCCGCCGACCCGGAAGACGCCATCGGTGGCGCGTGCGGGTTCGGGGATCTGGGGAAGCACGGGTACGGGATGGCGACGGTGGGGCTGAGCACGGCGCTGTTCGAGCGCGGCGCGGCGTGCGGCGGCTGCTACGAGGTGAAGTGCGTGGATGACCTCAAGTACTGCCTCCCCGGAACCTCTATCGTCGTCACGGGCACCAACTTCTGCGCCCCGAACTTCGGTCTCCCCGCCGACGCCGGCGGCGTCTGCAACCCGACCAACCACCATTTCCTCCTCCCCATCCAGTCCTTCGAGAAGATTGCGCTCTGGAAGGCCGGCGTGATGCCCATCCAGTACCGCCGCGTCAACTGTCTTCGTGATGGTGGTGTGCGATTCGCAGTCGCTGGTCGAAGCTT | |||||||||
gi|218492445|gb|FG950891.1|FG950891 MA_93-11_07786 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): ATTATCCATCCGTGAAGGGTACCAGCTTGATTATATATTTGATTGGACGAAGCAAGGTTCAGAAAGTAACAGATTGCGATCAAGTGGAAGGACAAGTGGGTTGGTGGGACCATCTGCAGAACGGACTGAACGAGCTGCAGCAAGACAGGATGTTCCTGACAGATTCTCTGGTACAGTCGATCCATTTGCTAGAAGAACTGGCTCTGGTTCTGGCCATTACGGAGAGCACACAAAGCACAGAAATATATTGGATTCATTACTTGCACCCAAGACGGCTGTTGATTTAGATAAAAGAAGGCCCACATCATCATCTCGTAATGGGAGCACATCAAGGAAGGCTCTCTTGTCAAGCAGCAGACCAAGTTCTGGAGATCCCATTGATCCGAACCGCAGTACCTAATTCCAA | |||||||||
gi|88588367|gb|CI706181.1|CI706181 CI706181 Oryza sativa (japonica cultivar-group) 20 days after pollination pistil Oryza sativa AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): TGCCAAGCTCCGCTTCAAGTGAGCTAGTCTAGCCAGCGTTTAGACACCATCACCAGCAATGGCGATCGCTGGCGTTCTCTTCCTCCTCTTCTTGGCACGGCAAGCCTCCGCCGCCGGGTACGGCGGGTGGCAGAGCGCCCACGCCACGTTCTACGGCGGCGGCGATGCTTCCGGCACCATGGGCGGGGCTTGCGGTTACGGCAACCTGTACAGCCAAGGGTATGGCACGAACACCGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTGCGGTGCGACAACGCCGGGAGTTCGTGCCTGCCGGGCTCCATCACCGTGACGGCCACCAACTTCTGCCCGCCC | |||||||||
gi|40488513|gb|BX898943.1|BX898943 BX898943 Oryza sativa library (Han B) Oryza sativa cDNA clone y813h01p5, mRNA sequence AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): TGTGTGGTACCGGAATCGGCATATGGCGGGGGCAAGGGCGCCACGCTCCCACCAGCCACGATTCCCAGTTTCCCACCAAAAACTTGTTTCTCCTCCACGTCGGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTCCTCCACCGCCGCAGCGTCATCCATGTCGGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGTGTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGGCGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATCCTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCTGACGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGTGGGGTACTTCCACCTCGAGGGACGCGGCGTCCCTTCCCAGCTGTCGTCCTCCGCGCTCGCCGAACTCTCCCTCGTCGAAGCGTTCGCGCGCCGCGCGTTTAAACTCCTCACACCCGGCGATACAGGAGGGAGAGACACAACAGGACGGGACGGCGCCCAGGACACGCCCTGATGGTGACGTCACAACAACAGCGGAAGGGCGCCCCCCCAGAAAGGGGAAAAACACCACGGGGAGGAGCGGAGGTCCTGCGGGGGAGAGAAGCGGAGACCAGGGCTCGGAGGCACCGAGGAGGAGCAGTAGTCGNCCGCACACACACCACCGCACACAACACAAACAGGACCCACGACCCGACACGCGGGAAGCACAAACGCACACACAACAGAAGACACAACCACACCCCCTACGCT | |||||||||
gi|88388480|gb|CI683257.1|CI683257 CI683257 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): TGTATGATAGAATCAGTGAAAAGAAGATGCTGACCCCAGTTGAGGTCCTCTGTAAATCTTATCCATCAGAATTTGTTTCATACTTCCATTATTGCCGATCACTACGGTTTGAAGATAAGCCAGACTATTCCTATTTGAAGAAGCTCTTCCGAGACTTATTTATCCGTGAAGGGTACCAACTTGATTATGTATTTGACTGGACCATGTTGAAGTATCCTCAAATTAGAGATAACAAACTACGACCTAGTGGGAAGACAAGTGGGTTGGTGGGTCGTTCTGCACAACGGACTGAAAGAACTACAGGTGAAGCTCTTGCTAGAAGAACTGGCTCTGGTTCTGGCCGAAATGGAGAACCCACCTAAGCACAGAACTCTACTGGACTCACTGATGTCA | |||||||||
gi|218496750|gb|FG968773.1|FG968773 MA_LYP9_07557 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAATTCCCAAACTCATAAGCATATACCTTACAGGGAGAACAAAAATCTCACAGGAACAGCACGCTATGCTAGTGTAACACCCATCTTGGAGTTGAACAAAGCAGGAGAGATGATTTAGAGTCTCTGGGCTATGTGCTTATGTATTTCTTAAGAGGAAGCCTTCCTTGGCAAGGTCTAAAAGCTGGCACAAAAAAACAGAAATATGACAAAATTAGTGAAAAGAAAATGCTTACTCCAGTTGAGGTTCTCTGTAAATCTTATCCCACAGAGTTCATTTCATACTTCCATTACTGTCGATCTTTGCGATTTGAAGATAAACCAGACTACAGCTATTTGAAGAGACTTTTCCGAGATCTATTCATCCGTGAAGGGTACCAGCTTGATTATATATTTGATTGGACGAAGCAAGGTTCAGAAAGTAACAGATTGCGATCAAGTGGAAGGACAAGTGGGTTGGTGGGACCATCTGCAGAACGGACTGAACGAGCTGCAGCAAGACAGGATGTTCCTGACAGATTCTCTGGTACAGTCGATCCATTTGCTAGAAGAACTGGCTCCTGGTTCTGGCCATTACGGAGAGCACACAAAGCACAGAAATACATTGGATTCATTACTT | |||||||||
gi|88427732|gb|CI689599.1|CI689599 CI689599 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): GGTGTGTCCTAAAAAATTCGAGTGGAGAGGGAAGAACCAGTAGCGCTAGCGCAAGCAGATTGTGGTTGGCGGCCATGGAGACCGCGGTGCTGAGCGCCGTGCTCAGAACGCTGGGGCCGAAGCTCTACGCGTTCCTCCGTGACGGGCACGAACTGTTGCGGCGGGACCTGGAGCGCGACGTCCACTACATCCGGAACGAGCTCGCCATGATCGCCGCCGCGATCGAGGAGCACGACCGCCGCCCGCCGCCCGCCGCAGGCGACGTGCGGAGCGCCTGCATCCGCGGCGTGCGCGACCTGGCCTGCGACATGGAGGACTGCGTCGACCGCTTCGTGCACCGCGCCACCGGCCA | |||||||||
gi|218491519|gb|FG966423.1|FG966423 MA_LYP9_05207 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): GGCTGCAGGAATTCGAATTGATCTTATAGACACCATCACCAGCAATGGCGATCGCTGGCGTTCTCTTCCTCCTCTTCTTGGCACGGCAAGCCTCCGCCGCCGGGTACGGCGGGTGGCAGAGCGCCCACGCCACGTTCTACGGCGGCGGCGATGCTTCCGGCACCATGGGCGGGGCTTGCGGTTACGGCAACCTGTACAGCCAAGGGTATGGCACGAACACCGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAGCTGCGGTGCGACAACGCCGGGAGTTCGTGCCTGCCGGGCTCCATCACCGTGACGGCCACCAACTTCTGCCCGCCCAACTACGGCCTCCCCAGCGACGACGGCGGCTGGTGCAACCCGCCCCGCCCTCACTTCGACATGGCCGAGCCGGCATTCCTCCACATCGCCCAGTACCGCGCCGGCATCGTCCCCGTCTCCTTCCGCAGGGTGCCGTGCGTGAAGAAGGGTGGGGTCAGGTTCACCGTGAACGGGCACTCCTACTTCAACCTGGTGCTGGTGACCAACGTGGCCGGCGCCGGCGACGTCCG | |||||||||
gi|86485386|gb|CI128019.1|CI128019 CI128019 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage and Panicles one AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTACTTGGCATAACTCTCCCTCCCCTTTTATTAGTAGATAGATTTCGTTACAGTAAACAAATTACACCTTCTATTAGTAGATAGATTTCGTTACAGTAAACAAATTACACCTTCTATTAGTAGATAGATTTCGTTACAGTAAAACTTAAGCCCGTCACAGATGACACCTATCAGTGACGGGCCGTAGTTTAGGTCCGATTGAGATAATATTCCATATCTCAAACGGGCCTGAAGTTAGGGCCCGTCACAGATGACCATCATCCGTGACGGGCACCAACTTTAGACCCAATTGAGATAACATTCCATATCTCAAACGGGCCTTAAGTTGGGGCCCGTCACAGATGACCATCATCCGTGACGTACACCAACTTGAGGCCCGTCATAGATGACTCATCAATGACGGACTATATATTAATCCCCGGTTGACATGACTTAATCTCTATGGGGCATTAACTAAAGCCCGTC | |||||||||
gi|88743232|gb|CI766740.1|CI766740 CI766740 Oryza sativa (japonica cultivar-group) root of seedling gamma-irradiated(45Gy), immi AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): GGAGCTATAGCTACAGGAAATCATGGGGAACATTGTCCTGCAGCTGCTCGCGATTCTTGCACTCTGCATTGCACCGGCGAGGTCCGGCTGGCTCCAGGGCACCGCCACGTTCTACGGCGGCGCCGACGGCTCCGGCACCATGGGTGGTGCGTGCGGGTACGGGAATCTGTACGACCAGGGCTACGGCATCAACAACGCGGCGCTGAGCACGCCACTGTTCAACAACGGGGCGTCGTGCGGGCAATGCTACCTCATCATCTGCAACTACGACAAGGCGCCCAGCGGGTGCAGGATGGGCACGGCGATCACCGTGACGGGCACCAACTTCTGCCCGCCCAACTATGACCTCCCCTACGGCGGCTGGTGCAACACGACCCGCCCTCACTTCGACATGTCCCAGCCCGCCTG | |||||||||
gi|29685451|gb|CB681726.1|CB681726 OSJNEf08F15.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf08F15 5', mRNA sequence AGTTGGTGCCCGTCACGGATGA EST sequence (targeted fragment marked with yellow): ATTCAATTTGCCCCTTTTCAAAAAAAATGTACTTCATTCAATATATATTGACGTGCTTTGCACGTGAAAAATCACCTCTTTTTGGAGTGCGGTGGCGGCTGGGGATGACCTCGGCTCTATCAGGGGGCAGCGCTGGACTGCGGCGGATGTGGAAGACCTCGGCTCCGTCGGGGTCTGCGCTTGACTGCAGCGGCGGCGGATGGGGAAGACCTCGGCTCCGGCGGTCACAGCGGTGGACTGCGGTGCCAGCGGCGGTGGAAGGGCACCACTAGTACAGATCCTTCTATCTGTGACGGGCTCTAATATGCTTAGAAATAGCGGGCCGTCACAAGGAAGTCATCTCAATCGGGCCGAAAAGTGCCCGATTGAGATATGGTCGCACAGACATGTTAGATGGGCATAAAACTTAAGCCCATCACGGATGACACCTATCAGTGACGGGCCGTAGTTTAGGCCCGATTAAGATAACATTCCATATCTCAAACGGGTCCATCTGTGACGGGCACCAATTTTAGGCCCGATTGAGATAACATTCCATATCTCAAACAGGCCTAAAGTTGCGGCCCGTCACAGATGACCATCATCTGTGACGGGCACCAACTCTAGGCCCGATTGAGATAACGTTCCATATCTCAAA | |||||||||