| mature miRNA: ATACTCCCTCCGTTCCAAATT species: Cenchrus ciliaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164108434|gb|EB663308.1|EB663308 5Y_JR_A06 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): TGGGAGTAAGACTTACCTTAGCCATAATGGTTGATGTCTTGTATTTTAACTAGGTTTAATTATTGTAGTCATGTAGTGTTTTGTACAGGGTTGAGTGGTAGACTATCCAGAGTTCCAGACTTTACAGACCTGGCCTGTGGTGCAATTAATGGTGGCGGAGATGTCATTGATTGTCCTGTTCAAGTGACAAGAACCTGCTTGATACCATGAATGTTCAGATAACACCTTTCAGCTCTCGTGCTTCTGTTGATTCAGAAATTCAGGCAAAACAGAGAATCTTCACTTTCAAACTTGGGATTGCCTTAACAGTAGTATTTTGAAATGTGAGCTTTTGTAGCAATATTGACATAATTTGTTGATGTTGTTTTCTACGAAAAGTGGCAAAAACATTATAAATACATGAATGGCTTGCAAAATAAAAACACAAATTGATAAATAGCCTTGACTTTCCCTTTTCTTCATCCAAAATTTCCCCAGTCAGTGACTATTATCTTGTAAGGACCCAATGTACACAAATCAAGGAAATTTTCTGAAGTTATCTGACTTTCTAGCAATCGGAGTGGATAATGATTTGTCTTGTGTCATCATCATTATGGAGGTGATATTTCCACTCAAAGGTTAGCTTATTTTGATATGATCCCATAGAGCCAAACTTTATACGTGACTTCATATATCTACTGCCTCCGTTCATAAATATACGACGTTTAGGATAAGATAGTTTAAAAATGAACTAACTTGCTTGTACTAAATGTTATATATTTAAGAACGGAGGGAGTATTATGATTATGT | |||||||||
gi|163976705|gb|EB672521.1|EB672521 72X_JR_H02 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): AGGACTTCCGCCGCTTGTTCAGGATCTACATCTTCCCGAGCAAGTTCTTGGTTGATCTCTTCCTCTTCGACCACCTCCCGAAGGGTATGCAGCGCGCCTCTTCCCCTTTCCCCTTGCTTTGAACAAAATCTGTTGGTTGTTGTTTGTGCCCTTGTGATTTCGTCCCGGTTTAGCTTTTTGGGTTCGTTTGGTAGCAAGATCTTGGTTGTTTTCGTACAACCCGTTTGGGATTTAGGGTGGAGACTGGAATTCACTCTTATTCTTCGAGGTAGGATCTCGGTTCTTTTTGGTTGTGAGATGACATGGTGCTAGGTGATAATTTCTTTTTCTATTCGATATGTTTGCTTGTCTAAACGTCATATATTAAGAACGGAGGGAGTATTGATCTGCTTTTTTTACCAAGGTTCTACCGCCCTTTGTTAATATGCCCTGTTAATGAACAAATGTCCACTACCTAGATTTCCCCTTCTTAGGGGGAGTTTGTAATCATTGAATTTTGATGGATCATGTTTAGATATACTATATTAGTATGCTGGCTGTTCTCTTGCTGTCAAGTAGTTATAACAAGATTGGGTGCAGTTTTTAGCCCGGATTCTGTCAGTCAGCTTGTTCTGGACTCTGGCTTAGTGGTTTGAGGATGTAATTTTATACGTGTACAAAGAATTTAAGCTTGATGGAAATAATTTAGATTACATCATGAGATGAAACTATGTCATCTCATGCCTCTTGGTTACCAAAGAGTTTCTTTTAGGTTTGTTTGCTTCTTAGTGAATATAAATGGAACTGAAAGGGAACTGAA | |||||||||
gi|27531974|gb|BM084065.1|BM084065 pPAP_02_B10 Apomictic pistil cDNA library Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): AAATCCCTGAAACACATTCTTTTTTTTAAGAAAAAGGTCCATTTGACATGCAGAGCGAAAAATTCTAACTAAAGTGCCAAAGTAAAAAATGTATAGCTTATGCAAATTTCTCCCATATACAACAGCTCAAGTTGCTCAAAAATTATCCTGAAATAGTAAATGATACTCCCTCCGTTCCAAATTATAGGTCGTTTTAATTTTTCTAGATTCATGAACATTATTATGTATCTAGACATAGTATATATCCAAATACATAACATCATCTATGAATCTTATAAGCCAAAACGACCTATAATTTGGAACGGAGGTAGTACAAGGGAACTCTTAACTTGAATGGTTGAATCTACAAGCCTACACAGTTTGTTTCCAGAATCTGATGGATCTATCGTTTCCGCAAGTAACAAACGCTGGCTCTACTGGGGAGTGGACAATCCATCTAGGAGCACCGGTGCCGTCAGAGGGCAACCTTGCAACTTTTTCAGGAGTAAGTGCATACCAGACGACAACCTCATTATTTTGGTCATCAACTGATAACACGAACTCTTCAGTTACATTGAAGACAGACTGACAACGGAATTGACTGCAAACAGCTCCTGCGTATTGCTTAACAAGTCGACCAGTGCCAACTTACCACAACTTTACAGAGGAATGCTTACCACAAGACAGGAGGTACCTTTCATCTTTGGTGAAAACTGCACTGGTAGCTTCTGCAGATCCGTGTGCTCTAACATTAGGACGAACACATTGAGCAGATACTGCATCCCAAATGCGCAGGAGAACCATCTTTAGGAGCAGTAACATACAAGCTGCCAATACAGGAGTAGC | |||||||||
gi|164143231|gb|EB666555.1|EB666555 83X_JR_C03 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): GAGATAGTCTCGAGTTTTTTTTTTTTTTTTTAACATAAATATTAATATATATTAGTATATATTTGGTTAAATTGTTTCTCCTCACTCGAAAGTGACACTTATTTTGAGACGGAGGGAGTACACCACAGAGACTAAAGCGATATATACATGTATACAGCCACAGCAACAACCAAGTAATAATAACCACTCAGCATTCACATAATTAGCTCCTTCAGGTGAAAGGAACTAACATAGGCCATGGCAATGAACTTGCGACCTCACCTGGGCGGTGATGTCTTGGATGCCAAAGATGCTATATAATCTGCAGCTTCATACAGCTCCTTCCTCCTCTGAGCAATCATTGCTTCCATAAACCCTTTATGCTCAGCTATGGATTCAAGAAGTTGCAGCAACTCGTTAGCAGCTGCCTGGGTTTCTTCCTCATTTCTTAGTATCGCATCCTGAAGCCTCTTCTCTGAATTCTTAAAAAATTCATCTGCCTCTTTTTCCACCAACCTCATTGCATTGTACTCTTTCTCCAATTCATCTTTCATACGTCTAGCCTCAGCTGTGCATCTTGAGTCATCAGTTGTGATTTCCAAATCCAGCAAATTCAAACGAGCAACCATCTAGACAAAAGAAAATACAAGAACAACATCAGCCAAGCTCTTCTCCTAAATAATTCTTTAGGATCACAATGAAAACAGACTGGGACAAAGAACCCAATAACACTAAATAAATGATACAAGCCAGAGTAACATAAGCAATGAAATGCTA | |||||||||
gi|164227519|gb|EB665836.1|EB665836 4W6III_JR-rd_C07 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): GACAAAATGACGAGTAATTTGGGATGGAGGGAGTATTTAGAATCTGTACCACCTTCCCACTATTCATTTTTATGTTCTTCCTGCAGCCATGATCTTCAGAAGTCACCATTCTCTTCTGCATTTCCCAATCCACAGCCATCTGTACTAATTTCGAATGCAGAACCCTGTGCTTCTAGCATTCCATTGATTTGAGATTCTTCTGAGCTATTTGGTTGCTTGTCATCATGTCTCCCTGTAACCATCAACCATGCTACAGCTGCATGCAGGTGGCAGCCATGCTTTCAACTTTCAAGTCAGTTCAATGCATGAGTTGTAAAACGTTTCCATTGCCATCGCAACATTGGGCCCTCCAATTTCCAAGATTGGCATCATATTTTGCAAGCCATTCCAATTTCCACCATTTTTCAGCACAAGGAAGCACATGATAAATGCAGGGGAGATCAATATTTATCTTTTTCCTTAACAAATCATGTCAGTGGAATTCTGAGTCCACTAAATGAAATCATGGTATAAGATGCTATCCTTTCCCTTAATGTTACAGATAAAAAGTACAAATTGCCCAATATGTTTAGCTATGTTTATTCCTACTTTC | |||||||||
gi|164154716|gb|EB655824.1|EB655824 75Z_JF_C07 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): GGTGCAGAAGATGAGCCCGAGGAGCAGCAGGAAAGGGATGGGGATGGCAGTCCCAAGCAGGCAGTCAACCCTGGGGAAGAGGAGAAGAGGGAATCTGTTCGTGTGACAGCAATACCCAATGTTGCTTGTGGATTCCAAGAAAGCTGCAATAATTGTGTAGAGAAAACAACGCTGTACGAGACATAATTTGAGCCGCCATGATTTTCAAATAGGAGTTCATGACCAGGGATAATCAACTAATCGTCCTCTCTGCGAAATGGGTAGATTATATCATCCTAAAAGCACCTCTTGCGAGTTGCCATAGAAGCTATAAAAAGGCTGGCTGATGTAACTTACTAGAATATAACAAGGCACTATGGACCCATATGCCCTCACTAAAAAGGCTGGGTGATATAAGTAGATTAAGAATGGAGGGAGTGTCTGTGACAGACATTGTTGATACTCAGCTCCTTTTTACCTTTTCTTTAAACCTTTTTCTGCTAAACTTTGCTTTGGTAGTAATGACTACTGACATGGAAGTCAATAGGAAATACCAAACTTAAAGGGGTCAGGTGCTATTTGTCGACTGAATATCCTTCAATGTTGTAAGTAATCCTGGAGGGTAGGTCTACCAAAACCTTCTTTTGTCAACAGTTCCAGTATTAAAAAGATACCTAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|27532349|gb|BM084440.1|BM084440 pPAP_07_B12 Apomictic pistil cDNA library Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTGGAGACAATGAAACTACAATAGAATGCACCACCGAGTCGAGATCCTCATACCCGCTAGAACAGACAGCAAGGACGAGTCTTTCATCTTATTTGCATGCGGGTATATTGTTCACCTCAAGCTAGCACCTACTCCCTCCGTCTCTCCGTCTCCCAGAAAGAGCGTCGTCCGGAAAGTGTGTCTGTGAGACAAACACGGTTTTCTAGCGATACTCTTTTTGGGACGGAGGGAGTAGCAGACAATAGAACGTCGAAGCGACTGTCAGCAGCGGGATACAGTGACACATGCTGTGAGCAGAGGCTTCGAAACCACAGAACTGCCTCCCGTCTCTCTAGATGGCTTCCTCACATTATAGGAGACTTTGAAGTCAGGCGCTCTTCAGAAACTGAGCATGGTGTGCAATGTGATCATCGACGAATGTAGCGATGAAAAAGTATGAATGGTCATATCCAGGCTGCATGCGCAAGATCAGAGGAACCCCAACAGCCTTGCACGCCTCCTCAAAGTTGCGCGGTAGCAGCTGCTCAGCCAGGAACTTGTCATCCTCCCCCTGGTCAATTAGGATAGGAGACGAAACTTTGTTGTTCTTTTTAACCAGGCAGGTAGCATCATATTCCTCCCAATCTGATTTAGTTGAGCCCAGGTAATTTGAGAATGCTTTCTGACCCCATGGNGCAGTTATCGGATTGGGCGATGGAGCAATGCTGATACTGACTGGTATTTATCAGTATTTTTCAAGTAAATTGTCAGTGCACCATGCCCTCCCATTGAGTGGCCCAAAATGGATGCCCTGGGTAGTGGTGGAACTGTTCAAAGTGATCGCTCAGAAACTTTGGGAATTTC | |||||||||
gi|164118342|gb|EB664262.1|EB664262 26W_JR_B11 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): CTCCCTCCGTTCCAAATTGTAGGTCGTTTTGTGTTTTCTAGGTTCATAGATATTATTATGCATCTAGACATAAACTATATCTAAGTACATACCAAACGTTATGCACCTAGAAAAGCCAAAACAACCTATAATTAGGAACGGAGGTAGTAGTATAGAAATACCTCATGGCAGCCGTGCTGATTTAGTGATTGTTATCTGCGGAAAGGATAGGGTCAGTAGACGACGACACTGGATCTGGGTATCATATTATTACTGTGCCTACAAAACACTTTTAAAACAGTTCTAGATCATATTTAAATACCGGAAAAGACTCGTGCTTTGAGCCAAATTTGTTCCATCCAGATTGAATTGTAAGACCTGGAGCCACGATGTGGTCCTGTTCTCTGTCTGCACTGCGTGGCATGTCGTATGTCTTGTTTTCACATGCACGCCTCGGGCAGTGGCCGTTGCACGTTTGAGTGAACCAGGTCAGAAAAGGTTGAGTGTTTCCTCCTACTCCAACTTGCCGTGAACCGTCCCAGAATCAGGAAAAGGACTTGAAGGCCTCCTCATGTCACCTCTGGATAGAAGTTGGTTGGGCTCTACGACCTTCACGTTGCANAATAAGGCTAATATCTCCCTGTATCCCATGCAACTTGCCTCGCGTCGTGCTATTTTGAGTATTCGTTTGAATAGGTCCAGACAAATCTGAGCACTAGAATCTCTACGGTTTGAGTTCTTGTGCGCATAACAAGTTTACCGTATGTGAAAGGGAACACATGCTTATGTTTTTCTTTTGTTGCA | |||||||||
gi|163991609|gb|EB671362.1|EB671362 74Z_JR_G11 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): GTGCAAATAAATTGGGACGGAGGGAGCAGCGGATAGGCGGCAGCTGCAGACCACTCGTCCCTGAATCTCCGGTCTCCGGCCACGGGCAGCGACCGCCCTTCCTGGAGAGGGGGCGGTTAAGGGAAAAATGAGGGGGGGGGAGACCACCTCCGCCACCCTCTCCGTCTCGCTTCCTAGGCCGCCGTCC | |||||||||
gi|164103602|gb|EB653079.1|EB653079 73X_JF_A01 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence ATACTCCCTCCGTTCCAAATT EST sequence (targeted fragment marked with yellow): TACGCTAGCTATCATTATATTATACCTTCAAGACCATGTGCAAAAGAACAATGATTCTTTGCCATCAGTTGTGATGGCTCTTTGCTTGTTGCTTCTTGACAGATCCAGTAAGCAAGTGAACAAGCACCTGGCCGGCAACCGTGGAAAGATTGAAATGCTTTGCTCAGAGATACACTAAAAAGATGAATCAAATCCTTCATGGAGATGGCATTACTACCAACCCTGGAAGGATCCTGCTGCGCCTTGCACCGAGATGGAGCGCAAGGAAGAAGAGCAGGCCTGCCGAAGCCTCCTGATCCTATTCTCTAATGCCTTCAGTGCCACCCTGCCGGAATTTCCGGTACTGTCACTAGATGATGTTGAAAATTCTGGCCTGTTCCAGTGGGAAAGGGAGTCCATGGTTAAGCAGCAACATTGCGATTAGTTTGCTGAAGCAGGAAGATGCACCTAAGACTGCTATACTCCCACATTTGACCTTTGTGCAAGTCGTAGAATTGTCGGTGTTAAAGGAATGCCTGGTCCTCCCTTGCACGGGCGAACGCAACCCATTCGACACTTCCACAATTTTGGAATGGAGGGAGTAATTGCTAAAAAAAAAAAAAAAAAAAA | |||||||||