mature miRNA: ATACTCCTTCCGTCCCAAAAT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|161471933|gb|EX591034.1|EX591034 HDP08H07T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP08H07, mRNA sequence ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CCGGTAAACTGAGATGCACTGCATACCTTGATTTAATAATATACTTCCTCCATACCTAAATATAAGTCTTTTAAGATATTTCACTAGGTGTCTACATGCGAAGCAAAATTAGTGCATCTATATATAAAGTATGTCTATATACATCTGTATGTAGTCCATTAGTGAAACATGTAGAAAGACTTATATTTAGGAACGGAGGGAGTAGACTATAGTAATTTTATTACAGATATATGCACATGACATTTACACCATGAGTTCGACATAGGATTTACAAGGTCGTGCATGCATGGTACGTGATGCATGTACAGTGCAGGGCAACCGTACCCTGCCTAGATACACACACATCACACTTACTTACACGCGGCACGCACGGGCACGCACTTACGTAGTTGATTAATT | |||||||||
gi|21800190|gb|BQ659057.1|BQ659057 HD02D12u HD Hordeum vulgare cDNA clone HD02D12 3-PRIME, mRNA sequence ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GAAATCTCTAAAAGGTCTTATATTTAGTAACGGAGGGAGTATGATGAATGCATGACAAGTCAGAACTATTCTTGTGATCGTTGACACTATTCACGCACAATTCAATTGGTTGAGAAACAGAGTGAATTCATCACACTTAAAACATCACAAACCAACCTAAAAATAGCACAAGAGTATGATGAGAATGAGGTTATGCCTCTTTGACGGGAAGGAGACGCAAGATATATTTGCCAGAGTTTGCAGACAGCCGGCAGCAATATCACCGTTCATCTCCATCATCTTCTCTTAGAAGACAAGCAGTATCACCGTTCATCTCCATCATCTTCTCTTAGAAGACCAGCCCTTGCGGGATGTTAAACAGCGCACGGATTGTCTCACTAGCCATATCTAAGAGCTGTAAATACTCATCTGCCCCATCGACCAAGCACTTATCAGCTTCCCCAAGCTTTCTACATATTCTTGCCTTGTGCTCATCTGGAATATCATCCGCATTAACGATCACATCTAGAAACTGCGAGAGCAGCTGGGAAACTGGATATCCGTCTGCAATAATATTGCTAACTTCCTTGTTTGCCACATCAAATTCACCAGATTTGCATGCTACAAGCAATGACTTG | |||||||||
gi|57828820|gb|CX630033.1|CX630033 GW001D14r GW Hordeum vulgare cDNA clone GW001D14 5-PRIME, mRNA sequence ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): ACGAGTGAAGATATATGTGTGAACAGTTTCCAAATGTTTTACTTCGGGGAAAACATTCGGCTAAAGCCGGGGATGCGTGGGTGAAGATATGTCCATGAGTGGCACTCTGTGTTGATCATGCAGGCTGTGTAGGTTTGGTCTTCTGTGATTTTTTCACGGGGTTTTTAGAAGAACGTCGAGATGCAAAAGATAGAACAAGATATGACGACTTCGAATGTTTTTTTCATCTGAATCTAGACCAAAAAACGTCTTGTATTTTGAGACGGAGGGAGTAGTTCTTACAAGGATCTTTGTCATGCTCATATGGATTATTTTCTTCAACCTAATGTATTGTAATAAAGAACACTTTGTTGATTTGTCAAAAAGGCCAGATCGTTTAATAAAGAACACTTTGTTGATTTTTCT | |||||||||
gi|161458575|gb|EX595424.1|EX595424 HDP27N15T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP27N15, mRNA sequence ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): AAACAAATTCATCATTTTTTGAAGTTCAAAATTGCAGCGCATATCAATCTTTGTGTCCAAAACATAAATCTTGACAGCAAACTTAGTTAACCATAGAAAACAATCCATTTGCTGCTAGATCAAGTTGGATGTATATAACAAAACAATCTGCTATGAGATCTATGAAAGATTAAGGAGGGAAGGATTGAGGGATGGAGATCTCTTGCAGCTACAGGATCAGGTGTTGTTGACTGCAAGGTAGTGCGAAGACAGCTAAGCATCCCTCGGAAAAGAGGAACATGTATATAATAATCCCTCTGTCCCAAAATAAATGACTCAACTGTGTACTAAATTTGCACTAAAGTTAGTACAAAGTTGAGTCACTTAATTTGGGACGGAGGGAGTACTTCCCTGTACGTTGGTAGGATCAATCATACTAGCAGCCATCAAATCCTCGTACTTTTCTGTAGCTGCATTGTGACCGTACCTGAAGTTGTCATTAACAAGGACAGGGGAGGTAGGTGAAGTTGTATGAAAGAGAAATTATCTAGTATCTGTTTTGCTC | |||||||||
gi|7613333|gb|AU089906.1|AU089906 AU089906 Hordeum vulgare subsp. vulgare Upper three leaves at heading stage Hordeum vulgare su ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CCCATCACCAACTTAATGTCAGCCACGNGCATGCACCATCGACTCAATCAATACTGCCATACGTAGTACTACTACCACCCAATTACTTCGCTAAAGAGAACCGTAAGTTGCCGGAGATATGCCCGGCGGCGTACGTATGTGCTCAATGCAATTCCGGAAGACTTCAGTCAACTTTACCGTAGAGGCACTCAACCCCGGCCTGCATGGACTGATGCACACAACCATCCAGTGGTTTACAGGCTATATGATCGAGATATGATATATGACTACAAATAACCAATATATATGTAGCAGCAGCTGGTGAAAACATATCTACTACTCCCACGTCCGAAATTATTTATCGCAGAAATGAATGAAAAATGAATGTATCTAAAATTAAAGTATGTCTAGATTATATTCATTTCAACTACGAGTATTTCCGAACGGAGGGAGTATAT | |||||||||
gi|18230322|gb|AV934525.1|AV934525 AV934525 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GAGGAATTCGGCACGAGGCACTTATTTTGGGACGGAGGGAGTATGACCTTACAAATTTTTATCTGTTATAGGNTATAGAACACAAGCCCTATGACCACAAAGCCGATGTTTTTAGTTTTGGAATTTTGTTGTGGGAACTGCTCACTGGGAAGATTCCTTATGAGTACCTGACACCATTACAAGCAGCTGTNGGTGTGGTTCAGAAGGGGTTGCGGCCTACAATACC | |||||||||
gi|40952284|gb|CK566710.1|CK566710 HO04G14w HO Hordeum vulgare cDNA clone HO04G14 3-PRIME, mRNA sequence ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CTTTTTTTTTGTCTTCCAGAAAGATGATTGCATTTTAGCAATTAAGCATGGATACAGAACTTGAGTATCCAATCCTCTAACCGCTAGCTACTCCTCCCTCCGTCCTATAATATAAGAATATTGTTTATACTATACTATATCAGAAACACTCTTATATTATGAAACGGAAGGAGTATATGTTTCCGCATAGAAGTTCACATGACCTGGGAGCAAAATAGGTTAATTCATACTCGGTATAATTACAACCGCAGCTGCAACTTTTTCGTGAGCTGCGTGCATCGCCTCATACATTACATCACATATCCTCCTCCTCAGAGATTGCAGTCAGCTCGGATGATAGATGGTAAGAATCATCTACATGGGCGTGCCCCTCGTCGCAGAAGAATGGCCTAGATGGCATTTGCAGGCCATCAGCGGCACCTTCCAGCATCTCTATCGCCTCGCTCATTGTCGGACGATCATGAGACCTCATCTGGATGCACCATAAACCAACAATGCATAGCTTCCTCTCCAACTCGTGCATCTCAGCTACTGCAGAAGATATCCCACTCTCATCCAATTGTTGCTCAGTTAGCCGGCTATACACCCATGAGGGGTAGTATGCCTGACTTGAGTTAACGGCATTGGGATCAGCATTCCTGCGTCCGCCAGCCATCTCGAGCAGCAGCATCCCGAAACTGTACACATCCGACTTACTCGA | |||||||||
gi|21941111|gb|BM373829.2|BM373829 EBma03_SQ002_N09_R maternal, 8 DPA, no treatment, cv Optic, EBma03 Hordeum vulgare subsp. vul ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): TTCCGTACCCATTCCTCTTTCTCGGACCTGGCCGATAGGCTGTAGGCGTATGCTAAAGTGTACATTCACTCATTTTGTTCCGTATGTAGTCACCTAGTGAAATCTCTAAAATGTCTTATATTTTGAAACGGAAGGAGTACAAGTTAATATGGGGTATCATTCTTCGGCATGTATCTTCTTCATCTGCTGATCGTGGGTTGTTATACACATGCCCTTGGTACTAATTCTTCCACATGTATCTCTTTCATGTGTGACATTACAACTTAATAAAAATGCCCTTTTTCTTTTTGCATAAAAAAAAAA | |||||||||
gi|94360544|gb|BY864230.1|BY864230 BY864230 Etiolated seedling shoot Hordeum vulgare subsp. vulgare cDNA clone baet70e03 3', mRN ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GATACCGATGATTACGACGACTAAATGCTGCAAATCATGTAATCTCATCTTACCCTTGTACTCTATAAATATAAGTCTTTTAAGAGATTTTACTAACAGTCTACATCCAAAGTAAAATGAATAAATCTACACTTTAAAATATGTCTATATACATTCGTATATAGTCTACTAGTAGAATCTCTACAAAGACTTATACTATTTAGAAACGGAGGGAGTAATGTAGAAAGATTGCTATTTTTCTCTTCCCAATAGTAATTTTAAAGTGACATACTCCCTTCGTTTCTAAATATAAGACCTTTTAGAGATTGCACTATGAACTACATACGGATGTACATAGACATATTTTAGATTATAGATTCACTTATTTTGTTTTGTATGTAGTCTTCTAGTGAAATCTCTAAAAGGTCTTATATTTTGGAACGGAGGGAGTAGTAATTATTGAAGGAGT | |||||||||
gi|21149332|gb|BJ470829.1|BJ470829 BJ470829 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three lea ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GCACTTATTTTGGGACGGAGGGAGTATGACCTTACAAATTTTTATCTGTTATAGGTTATAGAACACAAGCCCTATGACCACAAAGCCGATGTTTTTAGTTTTGGAATTTTGTTGTGGGAACTGCTCACTGGGAAGATTCCTTATGAGTACCTGACACCATTACAAGCAGCTGTAGGTGTGGTTCAGAAGGGGTTGCGGCCTACAATACCAAAAAATGCGCATGCAAAGCTCACGGAGCTTCTTCAGAAGTGTTGGCAGCAGGACCCTGCTGAAAGGCCAGATTTCTCCGAAATATTAGAAGCTCTTAAGAAAATAGCAGAGGAGGTTGGAGATGAGCACGACGGAAAGCACAAGGACAAAAGCCTGGGTGGATTCTTTTCGTCTCTGAGGGGGCGAGGACACTAAGGTGGCACAGGTGTACATGATTTGCAATCCATTTGAACGGGCCGTGAACGAAGATCAGCGCCTGTTTGTCAGCATACCCAGTGCCAGTACATTGAGATGGATGCCTGCTGCAGTGAACTTGTCCGGATGGCAACTTTTCAGTTGTAGTTCCACTCATCGGCTACAGCCAATAGTTCTTTTTTG | |||||||||
gi|217060678|gb|GH227003.1|GH227003 HVSMEm0022F12f2 Hordeum vulgare green seedling (Blumeria infected) cDNA library HVSMEm (HVcD ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): CAAACACAATATTTTGAGACGGATGGAGTATATGTCAGTATTACCATTATATTACACGTGGAAATTAAACAAGCGCACGCATGAAATGATACGCCCGCACGTGCAGGTTCGTCGGCGCCGGCGATGGCAAGGCTGGAAAGGCGACGCGGCGCATGACCTTCGCCAAGGATGACGCTGCTCCATGCATGCGTGTCGTCGAAGCCACCGCCGGCGATCTTGACCATGACGACGTCGACGACGCGTTCACCGTCCTCAACCTGGTGAACAGCGCCAGGATGCTCCCCAAGTTTGTCATGTTCAAGGGCAACAACGACTTGTTCCTGGCCTCCCGTCACATAAACAACCGGAACGTCCTCGAGTTCGCGGTGACGGACATCGGCGACGGCAGCGCGAGGTTCGAGCTCTTCCCCAGGAACGACGGCTCCTTCTGCATCGCCACCCACAACCCCGGCCAAGGAACGTGGTCGTCCTACTGGAACCTCGCGTCCGGGA | |||||||||
gi|21144755|gb|BJ466249.1|BJ466249 BJ466249 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): AAATGTAAGTTTTCATACCGTTGTTGTCTAAATTTAGTTGGCACTCAGTACATTTCCCTCCGTCTCAAAATAAGTGTCTCAAGCTTAGTACAACTTTGTACTAGAGCTAGTACAAAGTTGAGACACTTATTTTGGGATGGAGGGAGTAGTAGTTATGATCACCTAGGTATATGCAATACAACCTGATACCATATGTTTCTTTTTACATGCGACAATGTTTGTTCTGCTTGTGAAATTGTTTATAGAAAAGCTGATGTTCA | |||||||||
gi|16318242|gb|BE060539.3|BE060539 HVSMEg0012J07f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow ant ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GAGACGGCGCTCCAGTAAATAAATATCAGCTNTATTTTGTGGGGTTTTGTTTGTTTGGAACAAAATATTCTAGAAGCCTAGAATGCATGATCATCTGATTCACGAATGTCTACTTTCTACCCAATGTCGGTTGCCTGCAAGACTTAAACACACCCTGGAATTGTGATAACTGATAATATTTTCTTTTGGATCCAGTTCGATGTTCATTGGATCGTATCCCTATGGTTTGGTTTGGTTTGTTAAGATTGCAACCTAGTTTAGTTTGACAAGCTTATGCTCATGATCCAAGGAAACTACATACTCCCTCCGTCCGAAAATAGTTGTCTTCGAAATGAATGTATCTAGACTTAATTNTAGTTATAGATACATCCATTNTATTTATTTCTAGGACAAGTATTTCCGGACGGAGGGAGTACATGGTACCAGTGAAATATGGTTCACACTGTGTCTTTCGATTGCTGTAGTCTGGAGAACAAACTANTAGTTTCAAGTAATCGTAAGTTTGCTAACATTGATTATGTTACACATTATAGGTACGTTCAAGCTGACCCTGCAATCACAGAAGATTACCCCAACAGCCACCAACTGTTCGGGTTGCTAAAGATGTTCACCCAAACAGTATGCCCTCTTTATGACTTTCAATCAATACTCGAATGCTCTTGAAATGACTAACTGTTTTAT | |||||||||
gi|30076279|gb|CB874293.1|CB874293 HC15L09y CH Hordeum vulgare cDNA clone HC15L09 3-PRIME, mRNA sequence ATACTCCTTCCGTCCCAAAAT EST sequence (targeted fragment marked with yellow): GTTAGAAAGAGGAGGATATNGCACCGTTTATTTCTGTGAGACCATATTAAATTTGAACTAAAACCACAACAAGAATTATGGAACGGAGGGAGTATGAACTAGGACCGGTATATAACTGTACTAAATACAACTATATTTACAGTCATAATATGCAATAGCAGTTCTACAGAAAAATACAACTCTGTGTTCAGATAGAGATGTGTAGATCTAAATATCTTACCACACAACTACACATCGAAATCCTGCTAGTTATTTGTATGTGGCGCTTAGTCGTTCTTTCAAATAGTCACCCGCCGTGATAGGCGGAAACCTTGGAGGATATGCTTCGCAGCAACAGCTTTCCAGGCACTGAACCACTAAATCGGGTCTTGGATCCAGAAAGTAGGCCGCAGAATATCGCTCTCTGCCAACTGCAACAACCCGATGAAGCGTAGATCTGAAAGCACAATTCGTCCACCTTTCCAGCAAATCGCCAATGTTAACAATAAGGGTCCCATCAACATGATGAACATCTTCCCAGAGCTGGGGATGCCTATCTTTCTCCCTGCATATCTGCAAGCCAGGTGTGCCATCTGTTACAAGAAGAGTTATCATTCCATAATCTGAATGAGCTGATGCACCATAATTTCCATTATCAGACTCGTTCAGTTCACCT | |||||||||
gi|21130284|gb|BJ451688.1|BJ451688 BJ451688 K. Sato unpublished cDNA library, cv. Akashinriki vegetative stage leaves Hordeum vu ATACTCCTTCCGTCCCAAAAT |