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mature miRNA: ATAGGTATCAGGTCTGATACCTA
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|117244297|gb|CT849620.1|CT849620 CT849620 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD 

ATAGGTATCAGGTCTGATACCTA
 |||||| ||||||.||||| ||
GATCCATCGTCCAGGCTATGTAT

EST sequence (targeted fragment marked with yellow):
ATGACATCATGATACTTTTGATACCTTTTGGTACCTATATGTATCGGACCTGCTACCTAGGTACCACGATTGGTATCTATAGGTATCGGACTTGGTACCTATAGGTATCAACATGGTATACTAGGTACCACGGCTGGTACTGTTGACGAAAAATCAGTGCTCGGTTGATGTGCTAGATCTGCGTTGGTGCGAACTAAGTCGACGAACCTTTGAACTAAGTCGACAAACACAAAGGGACAGTATAGCGATATTGGAACAAAGGAGTCATACGAGAAAAACTCCAGGGGCGTGGAGATTTTCTCAAAATGTTGGTATCCAGAGAATCATCGCATAAAAGCAATTGTTTGTCTCTGCCATGGTTATGGAGATACCTGTACCTTTTTTCTCGATGGTATTGCTAGGAAGATTGCTTCAGCTGGATATGGAGTGTTTGCATTAGATTACCCTGGTTTTGGTCTCTCGGAAGGACTTCATGGATTTATACCAAGTTTTGACACTCTTGTTGATGATGTAGCAGAACATTTTACTAAGGTCAAAGAAAATCCTGAACATAGAGGTCTTCCAAGCTTTCTGTTTGGTCAATCTATGGGTGGAGCAGTTGCATTGAAGATTCATTTTAAGCAACCAAATGAATGGGATGGTGCAATACTAGTTGCGCCCATGTGCAAGGTAGATATATCAATGTAGGACCCTAACTGTATAAGTTCCGTCTGGCAGCTTTTTTGCAAACTCATTATGTTATAGATTGCAGATGATGTGATTCCGCCTTGGCCTGTTCAGCAAGTTCTAATTATTATGGCTAGACTTCTTCCAAAAGAGAAGCTTGTTCCACAAAAAGATTTATCACAGTTGGCTCTCAAAGAGAAGAAAAAACAGGAGCACTGTTCTTATAATGTGATTGCGTACAAGGATAAACCACGTCTCCGAACAGCTTTGGAGATGCTGAGAACCACAAACGACATCGAGAGTCGTTTGGAGGAGGTTTCGCTGCCCATTATCATTTTGCATGGTGAGGGTGATTTGGTCACAGACCCAGCTGCGAGTAAAGCTCTCTATGAT


gi|88726865|gb|CI750520.1|CI750520 CI750520 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro 

ATAGGTATCAGGTCTGATACCTA
|||||||||||.. .||||||||
TATCCATAGTCTGCGCTATGGAT

EST sequence (targeted fragment marked with yellow):
GATGGATACAATGGATTCTAATTACATATGTCATGTTGGGCTCTTGGTTATACCACATCTTAGAAACTCTAGTATGTGATACATAGATGCTAGATTATCATATCTGATATCCATGTACTGGGTCAAATACCTAGGTACCAAGTATGAAACCTATAAATACAAGATCTGATGCCGAGCTATCGGCTCTGATACCTATAAGTACTGGATCCGATAACTAGGTATCGCGTCTGATACCTATGAGTACCGATCGGATACCTGGGTATCGGGTATCTTATCTGATACCTATGAGTATTTATTCCAGTACCTGTGCGTAACGGGTCGGATACCCAGGTACCGAGTATGATACTTATGAATACCAAGTCTGATACCTAAGTATCGGGTCTGATACCTAT


gi|88720667|gb|CI743966.1|CI743966 CI743966 Oryza sativa (japonica cultivar-group) 4 nuclei stage anther Oryza sativa Japonica G 

ATAGGTATCAGGTCTGATACCTA
|||||||||||..|.||||  ||
TATCCATAGTCTGGGCTATCAAT

EST sequence (targeted fragment marked with yellow):
GATGGATACAATGGATTCTAATTAGATATGTCATGTTGGGCTCTTGGTTATACCACATCTTACAAACTCTAGTATGTGATACATAGATGCTAGATTATCATATCTGATATCCATGTACTGGGTCAAATACCTAGGTACCAAGTATGAAACCTATAAATACAAGATCTGATGCCGAGCTATCGGCTCTGATACCTATAAGTACTGGATCCGATAACTAGGTATCGCGTCTGATACCTATGAGTACCGATCGGATACCTGGGTATCGGGTATCTTATCTGATACCTATGAGTATTTATTCCAGTACCTGTGCGTAACGGGTCGGATACCCAGGTACCGAGTATGATACTTATGAATACCAAGTCTGATACCTAACTATCGGGTCTGATACCTATG


gi|88726865|gb|CI750520.1|CI750520 CI750520 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro 

ATAGGTATCAGGTCTGATACCTA
|||||||||||..|.||||| ||
TATCCATAGTCTGGGCTATGAAT

EST sequence (targeted fragment marked with yellow):
GATGGATACAATGGATTCTAATTACATATGTCATGTTGGGCTCTTGGTTATACCACATCTTAGAAACTCTAGTATGTGATACATAGATGCTAGATTATCATATCTGATATCCATGTACTGGGTCAAATACCTAGGTACCAAGTATGAAACCTATAAATACAAGATCTGATGCCGAGCTATCGGCTCTGATACCTATAAGTACTGGATCCGATAACTAGGTATCGCGTCTGATACCTATGAGTACCGATCGGATACCTGGGTATCGGGTATCTTATCTGATACCTATGAGTATTTATTCCAGTACCTGTGCGTAACGGGTCGGATACCCAGGTACCGAGTATGATACTTATGAATACCAAGTCTGATACCTAAGTATCGGGTCTGATACCTAT