| mature miRNA: ATATAAGTCCACCTAAGGGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73894864|gb|DT497602.1|DT497602 WS01126.BR_P07 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01126_P07 5', mRNA sequence ATATAAGTCCACCTAAGGGG EST sequence (targeted fragment marked with yellow): GAAACAACAAATCGAAGACAAAAAAGAAGAGTTTACTGAAGTAACAGTGCGAGGCCAGATTTATCAGATTAGCTAAAGGTAGAAGCGATGGCGGGGCATAACGAGTCTGAGAAAAAGTCAAGCGATGCCTTGGATGATTTGCAAACATTCAGAGCTGAAAATTTGCAAAGTAACATGAAAGTTATATATTACAGCCGAACATTTTTGTCTATCATTGGTGGGGTCGTTGCTGGAATCTTGGGATTCACTGGCTTGACTGGATTCGTCTTTTATTTTCTTGTGATGGCTATCACTTCAGTTGCGCTCATAGCTAAGGCAAAGTTTTCCATCCATACATACTTCGACTCCTGGAACCGAGTTGTATTTGATGGCTTTTTGGGTGGGCTTATGTCGTTCGTGTTGTTCTGGACATTTGCTTATGACATCGTACATATATTCTGATGAAGAGACAAGGTAGCTGCTCTGTCTTGAACGGAAAAGGAGCTCTGCTGCTGCTGCGCATTTACAACACCTTTGAGTTCGAATATGGCTTTAATGCGTTGTATCCATTACAAACAATCACAAATATTATTTGTTTGGTGTTGTCTTTGTTTCAATTGTGTTTTGGTTCAACAAAACCCTTAGTTTAGGCTTTGACTACACTTGGGAAACCTTTGCTCATTCAATTTTGTATGANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAA | |||||||||
gi|73880696|gb|DT483434.1|DT483434 WS02522.B21_J08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_J08 3', mRNA sequence ATATAAGTCCACCTAAGGGG EST sequence (targeted fragment marked with yellow): GTGAGCTTTGAGTAGAGCAATAGAAAAATAATGGGGTCGAGAGGGCTGGCGACTGGCGAGCAACATCAACATTGTCAGCAGCGGAGAAAAACAAGGCTAAACGCAGAGAGATACTGGAAAAGAAGAAGGCAATTGATGAATTGATAAAAGAAGCTTCTTCTTAGAAGGACCATCTTGTTTCTTTCGAGCCCTTTTGTCATTACAATAGAAATGGTCAATATGGAGGGGCTGTTTGGCCCCAAGTGGTCTACAGAAGAACAGATGAAGCGTAGGGACATGATGGCTTCAGAAGCATGTTATAGTTTTTTTTCACGAGGCTCCAAATTCCAGTGTTGATAAGATGTCAATAAAGTTAGATAAGAGCCCCTTGGTTGGATTTGTAAACTATCGCTTTACTCTTGAGGAAGAGATACCTGTTCTTTATGTGTATGAAATACAGCTCGAGTCTCGTGTCCAAGGGAAGGGACTGGGGAAATTATTTATGCAATAAATTGAGCTTGTTGCTCGCAAGGTGCTGATGCTCTTTCTTGTCAGCCCTTTAATGGTTGTGAATAACTAATTAGATATACAAATACACACATGTTTCTAGGTTTTCTTATTAAACAGCATACAATTATATAAAAAAAAAAAAAAAAAA | |||||||||
gi|24065138|gb|BU873614.1|BU873614 Q057E03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ATATAAGTCCACCTAAGGGG EST sequence (targeted fragment marked with yellow): GAAAGTTTGCTGAAGTAACAGTGCATAGAAAGATTTATCAGATTATCTAAAGGCAGAAGCGATGGCTGGACATAATGAGTCTGAGAAGAAATCAAGTGATGCCATGAATGATTTGCAAACATTCAGAGCTGAAAATTTGCAAAGTAACATGAAAGTTATATATTACAGCCGAACATTTCTGTCTATCATTGGTGGGGTAATTGCTGGAATCTTGGGACTCACTAGCTTGACTGGATTTGTCTTTTATTTTCTTATGATGACAATCACTTCAGTTGCACTCATAGCTAAGGCAAAGTTTTCCATTCATACATACTTTGACTCCTGGAACAGGGTTTTACTTGATGGCTTTTTGGGTGGGCTTATGTCGTTCGTGCTGTTCTGGACATTTGCATATGACATTGTGCATATATTCTGATGAGGAGACAAGGTAGCTGCTGTCTTTAATGGAAAGGAAGCTCCATTGCTGCTGCTTGCAACTCTAATTTACAACGCCTTTCGAGAATGGCTGCGATGCGTTGTCTCCACAACAAACACTTACAAGGATTATTTGTTCAGAGTTGTCTTTGTTTCTATTGTGTTTTGGTTCAAGAAACCCTTAGTTTAGACCATACTTGGGAAACCTTTGCTCATTCAACTTTGTATAACAGCTGCTTTA | |||||||||
gi|24074348|gb|BU882824.1|BU882824 UM82TG06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ATATAAGTCCACCTAAGGGG EST sequence (targeted fragment marked with yellow): TACGTACAAGCGATGGCTGGACATAATGAGTCTGAGAACACATCGAGTGATGCCCTGAATGATCCGCAAACATCCATAGCTGAAAATCCGCAAAGTATCATCGAAAGTCATATATCACAGCCGAACATCCCTGTCTATCATCGGTGGGGTAATTGCTGGAATCCCGGGACCCACTGGCTCGACTGGATCCGTCTCTCATCTCCTTATGATGACAATCACTTCAGTCGCACTCATGGCAAAGGCAAAGTTTCCCATTCATACATACTCTGACTCCTGGAACAGGGTCTCACTCGATGGCTTCTGGGGTGGGCTTATGTCGTCCGTGCCGTCCTGGACATCTGCTTATGACATCGTGCATATATCCTGATGAGGACAAGGTAGCTGCTGTCTAGAATGGAAAGGAAGCCCCATTGCTGCTGCCTGCAACCCTAATACACAACACCCTCCCGAGAATGGCTGTGATGCG | |||||||||