| mature miRNA: ATATAGCATCATGAGCAATCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52376960|gb|CV226984.1|CV226984 WS0165.B21_N17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0165_N17 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGTGCCGAGCAGTGCTAGGTACGGAAGGCCTAGTGCTTATCAGCAAAGGTCTCCAAGCTTGAAGGGCCTTCCGGGTCCGATAAAATGTAACCGGCCAACGTCGAAAGTTCTTAGCTTTGATTCAGATTGCTCATTAAAGACTTGGGATAAACAAAGTTCCTTTAGATGACTTCAGACTTGAGTGGTTAAGTGCAAGTAGTTTTGAGTGCAGATGTAAACACATACAACTTGAATGGATATATGTGTGTCTCATTCAATCTGTTCTCCTAAAGCAATTAACTGTTCATGAAGCTATATGGCTGGTGTATAGCTTCAACATCTAGGATTCTTCTTCAGAAAGAACAAATGGCCTGGTAGACTCGATTCTGTTCATGCCCTTCCTGCTAATCAGCACTCTGAAATATGCAGCAATCTGAATTTTTCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52385047|gb|CV230991.1|CV230991 WS0193.B21_D13 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_D13 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGGAAAAAGCATTTTGAGATGCATGGAAAATGCTAATTGAACTTCAATTTCAAGGAGCTCTACAAAAATAGCTCAAAGAAAACATCAACAGACAGATAGTGTGAAACCTGCTAGCTAGAGGGTTCAGAAACAATTAATGGCCATTTCTAATTAGAATAGCATACCATCATGAGCAATCAGCCTTGGAATGTTGCAGCAGAGTGACTGCTCATGATGTTATATCATTCTCTGAAACTTTGAAACGGCCTTGGAATCATATTACATCAGTCAAAACCCTCCTCCGATAGCGGGAGCCCAGTAATCGGCACCATTGTCACTTCCAACATGCTGAGTACAGGACACGGGAACCAAGCACAGTCCTCTACTCCTCAAGTCCTTTGGCTGGTCTTGATTATCAGATTGTTGCTGGTTCCTCATATTTGGTGAGGCAGTGCCCATGTAAGGGGAGCTAAGAGCCTCAATTTGACCCTGAAGGAATCTGATATACCCAATAGCTTCTAACAAGACTGAAGCTGTGTCAGTCTTTCCAAAAGGGGAAACCATTTGGTGAAGAGCTGTTATTCTATCACCTAACTTCTCCTTCCTCACCTTAAGAGGTTGGCTTGAAGAGGGCTGAACCCTAGCCTTCTTACACACTCCACCTGTGGCTGTACTGTTACACTAGCAGAAAAG | |||||||||
gi|73883265|gb|DT486003.1|DT486003 WS02529.B21_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_M06 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTGGGAAGACTGACCCGGCCTTTGTTTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCAGAGCCAAATTGAGGCTTTCAGCTTTCCGTACTTGGGCAGTGGATCCCCAAATATGAGGCAGCAACAATTTGTTCAAGGAGAAAGCAACTGTATATTTTCCGAGGACCCCGGTCAGCTGTTGAATGATAGCTGCATAAAGAGGAAAGGAGCTTTTCAGCAGGACTTTCCCGGGGAGCCAAAGGACCTGAGGAGTAGAGGATTGTGTCTTGTTCCAGTGTCATGCCCCCTGCAAGTTGGCAGCGATAATGGAGCAGACTACTGGGCTCCCCCTTTTGGAGGGGGGTTTCGATAGGGGGAACAATTTTTTGGTGGGGGGTTTAAGCCCCCGGGGAGCTTCATAAAATGATATAACATCATTAGCAGTCCCTTTGCTCAAATTTAAGGGTGATTGCTCATGATGCTATATGCGGTTTTCGCTATTTGTGTGTGCTTTTTAGTTTGGACCTGAATGTTTTTAATTTGAACCCTTTGATTTAAGATCAAGACTTATAATCTATTTATGTTTTTCCTCATTTAGCTGGTACTAAGATCGATGATGCTTTCATGTAAATGCCCTACTTTTAGTATGGTTAATCATTTTAATGCTTGTTGCGCCCGGATTAAGCAGCATTTTTTGGATCATTTTTAATTGTCAGCCTTCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73867491|gb|DT470229.1|DT470229 WS01920.C21_E02 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01920_E02 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GATAATGTTGGGCATAAACTCTTGTCCAAAATGGGCTGGAAAGAAGGTGAGGGTCTAGGGAGCTCCAGAAATGGTATTTCAAATCCGATCATGGCTGGTGATGTAAAGAAGGATCACTTGGGTGTTGGTGCTCACAATCCTGGGGAGGTGACTGCTGATGATGATATATATGAGCAGTACAAGAAGCGGATGATGCTTGGTTACCGTCACCGGCCGAACCCCCTGAACAACCCTCGAAAAGCATACTACTGAGCAATATTTCATGCAAGCTGTTTGTTTGTAGACTGTCTTTAAGAAATAATCAGGTGTCGAATTGCTTATTAAGCTATTGGATTGTACCCTGTGACAGAATGGGAGTTGTCTAGAGTTTGCTATGTGTGGAATCAGTGCTCAAGGATAATTCCTTCATATTCTTTTTATGCTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52384549|gb|CV230740.1|CV230740 WS0192.B21_H19 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0192_H19 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGTTCAACATCCTCAAGCAACACTGCACGAATGTCCCTAGCAAAGTTGCGTTTGTGGGTTCCGGTCCGCTTCCCTTATCTTCAATTGTGTTAGCCTGTAATCACCTCACCGCAACTTCCTTCCACAACTATGATGTTGACCCTTCAGCCAATTCAAAGGCTCTTCAATTAGTCACGTCTCATCCTGACTTGTCGAGTAGAATGTTCTTTCACACGACCGATATAATGGATGTGACAAGTGAGCTTCAAGAGTTTGATGTCGTCTTCTTGGCAGCTTTAGTTGGGATGGACAAGGAGGAGAAGGTTAAGGTCATTGATCATTTGGCTAAGCAGATGGCTCCTGGTGCTATATTGATGCTGAGGAGTGCTCATGGAGCTAGGGCTTTTCTCTACCCAGTGATTGATCCTTGTGATCTTCGAGGATTCGAGGTCCTCTCTGTGTTTCATCCAAGTGATGAGGTGATAAACTCGGTTGTCATCGCTCGTAAATATTCAATGCCTATAAATTCAATCGATCATCAGCAAACTGGTCTTGGCTCCATGATAGTACTGCCTAACAAGTGTTGTGAGATCCTGTCCTTCAATCCCCTCAGCCATGTTACCATGGTTGAAGAGTTGGCCGTTGAGGAGCAACACTCATAAACTCTCTATCCATGTGTTCGGCCTTAATATCCTCTTATATTATGCACCA | |||||||||
gi|73889728|gb|DT492466.1|DT492466 WS02550.C21_M22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_M22 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGTTTCTTTGACTAGCTGTTGAATGATAGCTGCATAAAGAGGAAAGGAGCTTCTCAGCAGGACTCTCACGGGGAGCCAAAGGACCTGAGGAGTAGAGGATTGTGTCTTGTTCCAGTGTCATGCACACTGCAAGTTGGCAGCGATAATGGAGCAGACTACTGGGCTCCCGCTCTTGGAGGGGGGTTCCGATAGGCGGAACAATCTTCTGGTGGGAGGTTTAAGCACACGAGGAGCTTCATAAAATGATATAACATCATTAGCAGTCACTCTGCTCAAATCTAAGGCTGATTGCTCATGATGCTATATGCGGTCTTCGCTATCTGTGTGTGCTCTCTAGTTTGGACCTGAATGTCTTTAATTTGAACACTAGGATTTAAGATCAAGACTTATAATCTATCTATGTTTTTACTGCATGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52376497|gb|CV226758.1|CV226758 WS0165.B21_D07 PT-DX-A-7 Populus trichocarpa cDNA clone WS0165_D07 3', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGTGACTGCTGATGATGATATATACGAGCAGTACAAGAAGCGGATGATGCTTGGTTACCGTCACCGGCCGAACCCCCTGAACAACCCTCGAAAAGCATACTACTGAGCAATATTTCATGCAAGCTGTTTGTTTGTAGACTGTCTTCAAGAAATAATCAGGTGTCGAATTGCTTATTATGCTATTGGATTGTACCCTGTGACAGAATGGGAGTTGTCTAGAGTTTGCTATGTTGTGTGGAATCAGTGCTCAAGGATAAATTCCTTAATGTTCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|3858054|gb|AI166770.1|AI166770 xylem.est.57 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence ATATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GCAGTAACATGTTGGATTTCTCTACCAGCAAAGGAGATGGAAGGCATCCACCACCAGATCGATCTTCTGATTGTAACAGCACCGCTAATGGTGGGGCAGTAAAGAAAGCTAGGGTTCAATCTTCTTCCGCCCAACCTACCTTTAAGGTGAGGAAGGAGAAATTAGGTGATAGGATTACCGCTCTTCACCAGCTTGTTTCTCCATTTGGGAAGACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCAGAGCCAAATTGAGGCTCTCAGCTTACCGTACTTGGGCAGTGGATCCACAAATATGAGGCAGCAACAATCTGTTCAAGGAGAAAGCAACTGTATATTTCCCGAGGACCCCGGTCAGCTGTTGAATGATAGCTGCATAAAGAGGAAAGGAGCTTCTCAGCAGGACTCTCACGGGGAGCCAAAGGACCTGAGGAGTAGAGGATTGTGTCTTGTTCCAGTGTCATGCACACTGCAAGTTGGCAGCGATAATGGAGCAGACTACTGGGCTCCCGCTCTTGGAGGGGGGTTCCGATAGGCGGAACAATCTTCTGGTGGGAGGTTTAAGCACACGAGGAGCTTCATAAAATGATATAACATCATTAGCAGTCACTCTGCTCAAATCTAAGGCTGATTGCTCATGATGCTATATGC | |||||||||