| mature miRNA: ATATTATGGGACGGAGGGA species: Triticum monococcum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9660291|gb|BE493698.1|BE493698 WHE0574_C09_F18ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA cl ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): GGCACGAGGCTGAGGAGGATGGAGGCGGCGAGGGAGTCGCAGCGGATGCGCATGGAGATGGCCCTGCGGCACCTCGACGCGCAGCGCCGGCTCCTGGACGGCCTCGTTGGCCGCATCGTCGACGCGTTGGAATGAAGCGGTGGCGCGGCAAAGGTGTCCCCTCCTTTCAAGATCTTTCGTGCTTTCTCCTGGTTACACACTCCCTGACGAGTTGAGGTGTTTAGAGCTACGTCCTTCATACTCCATGTACCTGTGATGGTCTGATGGATCATGGCTGTCTCATCACATAGATGTAGATGCGTAGAGAGCAAATCCTGCTGCTTTTACTGTCTTCTGTATAGTTGTCTGGCCGAGTGGAAGCACTTCTTATGGGAAAGAAATGGATCTTGAGTTTTCTTCACCTTGTACTTGCATATTGCGTTCCAATTTGTTTGGATTTATGCTGTGAGGAAGATATAATATACTCCCTCCGTCCCATAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|13114408|gb|BG312605.1|BG312605 WHE2455_G05_M09ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcu ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): TGTGGCTTACGATTTTATATCAATCGGGTTTGCCACTTAAATTTGTATTTTGTGGCAATATTTTTGTTGACGACAAAGAAAAAACCAAATGTTTTGTTTGTACGTATTTAGCTTGGTACCTCCCATAAATGTCATTGTTCACAGGGTTATTCATAATATGATATAACTTGTTCTGTGGCATATTTGCAGGAACTCCTTACACTCAACAATCGTACAAGGTTAGCGAATCATTCCCCTTCAAGTGGATCAATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCTATGGCCACAGCTGGAAATCGCTGGGGAGTAGTCATGTCAAGGAACTCTGGCTATTCTGAACAGATTGTTGAGTTGGATTTCCTGTATCCAAGTGAAGGCATCCATCTGCGATGGGAGCATGGTTACAGAATAACTTCTTCAGCAGCTACCGGTGATCAAGCCGCTTTTATCTTGAGCAAGCCAAAACGGAAACCAGTAGACGAGACACAAGAAACTCTACGGACCTCAGCCTTTCCCAGCAACCATGTAAAGGTACCTTCGCAGCTCATACAATAGTGTTACTCTTGTCATAAAATACCAGGGATTCTTCATATCCTCTACTATTACATACCACTCCCTGCATCCCATAATATCAGAGCATTTTTGACACTCCGTCAAAAAC | |||||||||
gi|22018857|gb|BQ803888.1|BQ803888 WHE2843_C08_F15ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): GCTGATCAATCCTTTCTTTCAGACTCCCGGGCTCCGGCAGAAACAACTTATTTATCATATGCGAGAGCAAGGAATTTATCGTCAGAAGTTTGTATAACTTTGTATTTTTGTTATGGTTCAAAATCTCATGTCTGTAATAAGTGCCCCATCCGTCCCATAATATAAAAGTGTTTTTCACACTACACTAGTGACAAAAACGCTCTTATATTATGGGACGGAGGGA | |||||||||
gi|20314542|gb|BQ168817.1|BQ168817 WHE2461_C09_F17ZT Triticum monococcum early reproductive apex cDNA library Triticum monococcu ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTATCAAGACATGAGAACTTAAATTCACAAGATCACATGTACTCCCTCCGTCCCATAATGTAAGACGTTTTTTGATACTACACTTTGATAGGCTGACAAATGAACTGCTCAGTAGAACAGGAAAGAGCCCCCTCAAGAAGAGAACAACAGGTTGGCAACAGACTGATAATCTTAACACAAGAGTGCCTGGCCCTCACAGGCTCGCAGCTAGCGACCGTTACAACTGCAACATTCCAAGTTCATCAGGGTAGTAGATTGCTAGTTAGATTGGCTCTTGCTGGAACTAAATAACAGATTTACTATGTAATATATCTTGGTCAACTGTTCTGATTCTGCCTGGCTGACATGTTAGCCATGTCTTCAGCAGTCACTGGCTTGTGCATTGCATTCGCAATGGCTAACCAATGAAAGCACCGTGGGAGAGGATCCTCTGCGGATGGCATGGTGTCATGATTCCAGTAAGTTATGTTCTGGAATTCTGCACGGGA | |||||||||
gi|13116032|gb|BG314229.1|BG314229 WHE2460_H04_O08ZS Triticum monococcum early reproductive apex cDNA library Triticum monococcu ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): CCTCGCGCCGGCGCCCGTCGTCCTCGCCGCCCCGGCTCCCGCGCCGAGCAAGAAGCCCAAAACCAAGAAGCACGTGTCCCCCGCCGCGTCCCCCATGTCCGCCGCGTCGTCGCCGACCACCGGCCGCGGCCTCGCCCCCGGTCCCGGCCCGTCCGCCGCCGACATGTCGAGCGACGCGGCGCGAGACCACCACAAGGCCACCGGAGGCGCGACGCTGCTGATGCTGGTCCTTGTTTCGCTGACGCTGGGCCCGGCGTTGGCCTGAGCGTCCTGAGGATGGAGGGTGGGGGTCACTCGTCAGGCTGTCCACCGTCCGCTGTTACTACCGCTGCCACTGTTATTACCACTACTGTCACCGTCGGCGCCACTGTTCCAACTACGTACTAGGCCTGCTCCACTAATTTTTGCTTGGACCCTGTGAGCTGCATCTGATCCGCAGCACACCTTTGCTACCTTCCTTCCCATGATATTATTATCTTGTTACCATGCTCTCTAAATCGTCACTAGGTTGATACTGTTGCTTTGCAATGGATACTTTTGATGTGTGCTATATAGTTGTGCCCATGATTATGAGTCAATCTTGAAGCCTGGTTGTTTGCAAAAAAAAAAAAAAA | |||||||||
gi|9659942|gb|BE493349.1|BE493349 WHE0571_F10_K19ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA cl ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): GGCACGAGAATTTGGTTTGTGTGTGGTAGCATTCCTCCTAGCTTCATAGTATGGTCTATCTAGCTTGGCTTTTACTCCCTCGGTCCCAAAATAAGTGACACTTATTTTGGGACGGAGGGAGTACTTTAATGAATCTGAAGAAGCGTTATGTTT | |||||||||
gi|11114329|gb|BF199970.1|BF199970 WHE2251_D07_G13ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA c ATATTATGGGACGGAGGGA EST sequence (targeted fragment marked with yellow): CACGAGCCTTGGAAAAAACAGCTTAACAACAATCGTTCAAGGAACAATTGGATACTTGGATCCTATGTACTTTTACACAGGCCGTCTCACAGAGAAAAGTGATGTGTATAGCTTTGGTGTCATTCTCGTGGAACTGCTAACAAGGAAGAAACCATTTTCGTACTCCTTCCTTGATGGAGACGGCCTAGTTTCCCATTTTGTCAAGTTGCTTGCTGAAGAAATACTGGTCCAAATACTAGATCCGCAGGTCATAGAGGAGGGAGGCAAAGAAGTTCATGAAGTCTCCATACTTGCAGCATCATGTATAAAGTTAAATGCTGAGGACCGGCCTACAATGCGACAGGTGGAACATACACTCGAAGCCCTCCTCGTATCCAACAAAACTGTCCGAAATGATGCAGAAGTAGAGAAAATNTAAGAGCGACATTGTTATGATGACTTGCTGGTCGATAAAATAAAGGCAAAGCATACCGGAATGGAGCAGACGATATAGGATGGAATAAGAAATATTGATGTATGCGTTGTTGTAGTTAACCATGTCGTTAGTATCTAGTATGGCCAACTTGGTCCAAAACGTCCTAGTACTAATCTACTACCTCCGTCCCATAATGTAAGACGTTTTTTTGA | |||||||||