| mature miRNA: ATATTTTGGGACGGAGGGAGT species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36076662|gb|CA301147.1|CA301147 SCCCLV1C04C08.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCCCLV1C04C08 5', mRNA seque ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGACCCCACTTTGAAAAAAGAAGTAGACAACCACAACCACACCACGGCCACGGCACGCGGTGTTTTGGTTGCTGGATTGGTTTTAGACTTCGAGTGTTTGACTGTTTCCAACTTCTGCAGCATGGTCAGTGCAGCGGTGCGTTTGATTGTTTCGGCTCGCGGTGCAGGCGAGCAGTGGCTGTGCCGATCGAAGACATGGTCGGCCGTGGCGTGGAGTCTAGATCGTCAACCAACTTCGTCCAGCTTCAATATTTTAGTTTGGAGATATGGTTACGATCTAAGACAGCATGGAAAGTAGTATTCCCTCTATCCCATAATATCTGTCGCTTTTGGTTCTCATGCCATAAGTTTGACTCAATTTATAGAAAATACGTACAACATTTGTATCTCTAAATAAAGTTATTAAAAAACTAGATTTAAAGATATTTCCTATATACCATAAATATTAATATTTTTAATATATATTTTGTC | |||||||||
gi|268803999|gb|DV549016.1|DV549016 SUM01-074-D10-A-078.g Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): TGTAATCTCTCTGCCAGAGAGAAAATGGAAATGCATATCAGCAATATGCTCCCTCCATCCCAAAATTTTGGATACAATCCTAGAACGATACCCAATCAAACTATCTTAAAGCTGACTAATTTTTTTTTAAAAAAAGTATTACACTTATTATACTAGTCTAGTAGATTTGTTCTGAAATTTAATTTCAGAATTTACCAATTCGCGCTGTTTACATCCAAGCAACTAATAGTTAGATATCAATAATTAGTTAGCTCCTCGGATCCAAATAATTTAGCTAATTGTTAGAGTATCTTCGAGAGTACCTCATATCCCTTTCCTATTCATGATTTTTGAAAAAAAAAAAGAAAAATTCATCTCCATGAGTACCCCATATCCCTTTTCCATCTTTTAGCAATGAGCAAACAGGTCGGCATTGTGCGTAAAAATGCGCGCAGCCTTTCTTGCGCGCATCGCTCTTCCCCGCGCCGTCTTCTCGGTCAATCTAAAGGCTGAAG | |||||||||
gi|36050666|gb|CA292322.1|CA292322 SCACFL8022H09.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCACFL8022H09 5', mRNA seque ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): CTTCCTACAGTAAATGACCCAATGGATACCGGAACATCCTCACAAGAACCAATCCTTGAGTACAGCCAACTTAGCAAAAGCCACCTGCAGGATATACGACCTTCTGAACGTGACAAACATGAGGCAGAGTTCAAAAAAAGAACAGGTGTGCTACTGGCTGATATTGAGCGCACTGCTCCTAATCTAAAAGCATTGGATCAATATGATGCACTCCAAAGAAAGGAAAAGGAGGTTACTGAAAGGTTTGAAGCAGCTAGGAAAGAAGAACGAGAGATATCTGATAAATATAACTCAGTCAAGCAAAAGAGGTATTGCCCATTCATTTTCTTATCACCATATGAAGTTGGTGACATAGAATTAAGTTATTTTCTAGGATGCTATATCTTTTGTAAGGACTTGCAGGATTTCTTCCGTTGCACTTTGGAGGACTCATGCTATCTTTTTCTTTATGGAACTGAAGTTCTTTGTCTTTTACTCCCTCAGTCCTAGAATAGAAGGCATAATTGCTTTTTTTCTACTCCTGGTATACAATACAGGGTGCCCAATTCTTGGCATTCGTATACTCGCATGCATAATTTAATATGCTGCCTGTTGCATGGCTC | |||||||||
gi|36040213|gb|CA289044.1|CA289044 SCEZSD2081C08.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCEZSD2081C08 5', mRNA seque ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GAGAGTGGAGATTTGAAAGTTCCGAGTCACTGTCCGTTCGGATCAACTTGCTGTGGCTGTGCTGCGCTGCAGCCTTAGCAGCTCCCAGCTGGTCATCAAATGTAAAGAAAGTTGCAGCAGCTACAGTGAAAGGGTGAAACGTCTGCAAAGTAGCTACAGTGAAACGTCTGCAATGTATGATATAGCTGAGTACATATATCTTTTGCACATAGTATATGACCTGTCGTAAGAGACGGCAAAGAAACCTCTGTATATATGACTTGTCAAATAATGCCCGGCAAAGAAACCTCTGTATATAAGACCCCTCTCCCTCTGTCCTAAAATAGCTCTCAGTTCTCGTTTCTCGAGAAGTCAACGTTTTTCAACTTTAACAAATTATATATAAAAGAATATTANTNNNN | |||||||||
gi|36035541|gb|CA287554.1|CA287554 SCMCSD2063B01.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCMCSD2063B01 5', mRNA seque ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ACAGTCTAGGGGAAAACAGGAGCATAGCTGCTCATACTGTAGTTCTCCTGATGCGAAAGTAGAAAGAACAAATAGTACCTAACTGTACCGTGCTACAGGAAAAAGGTCCTTACGTTATACTCCCTCCATCCCAAATTATAAGGCATTATAAGAATCTTGGAGAGTCAAAGGATCTCAAGTTTGACCAAATTTATATGATAAGATAATAATATTTATGACACCAATTAAGTATCATTAGATTCTTTATTAATTATATTTTTATAGTATACTTATTTGATGTTATAAATTTTTATAATTTTCTCTATAATTTTGGTCAAACTTAAGATGCTTTGACTCTCCAAGATTCTTGGAATGCCTTATAATTTAGAATGGAGGGAGTACTTGTCATTGTTAAGTGATCTAACCAGTATGGAAATCTTTATGTTGGCCAAACATTAAGCCTGATGGCAATGAAAAAATTCTTGTAAAAAAA | |||||||||
gi|36073663|gb|CA300093.1|CA300093 SCRFLV1034D06.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCRFLV1034D06 5', mRNA seque ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ATGCAGAAACGCCCTCCTGTGTTTTCATTTCTATAATGCAGAATTATGCTACCTCTGTCCCAAAATAACTACCTTTTCTGGCTATCCACCTGGACCAAGTAAGAAAACAGTTACTTTGGGGTAATTGTATTTTGCTAAACTGAAATATTTTGACTCATAGGGTATTGAAGGATTGCGCGATATAATCGCTGCTGGAATAGCCTCTCGAGATAATTTCCCATGTAATGCAGACGACATTTTTCTGACAGATGGAGCAGCTCCACCGGTACCTTTTCATTTC | |||||||||
gi|268781841|gb|DN194563.1|DN194563 Sum01-030F-G02-008.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): TGAAAGTACACTTGTAATAATCTTCAATATCAGATCGCAAAGAAAGATCTCCAATATCGAAGTAAACTGAATCATAGTGGACAATATTTAATAAAATAACAGGTCAAGTGGAGAAGTTTAAATAAAAATGGTAAGCAACCATTTTGCTCTATCAATTTTTTAGGTATACAAATTATTAGATTAAAGTGTTTGTATATAACTTAAAACTAAGGGTGACAGGTTGTCGCCATTAGCGGCCAGTTAGCAAGTACTAGGTGTAGTCTGTTGGATATACTCCCTTCATCCTAAAATAGATGCAGATATTATTTATTGAGGAGTAACCTTTTTTCAGTTTGACTAAAAGTAAAAAAATACTAATATTTTTTATCTTTAAATAAATTTATCATGAAAGTATACTTAATGCTCAATCTAATGATATTTATTATACATCATAAATATTAATATATTTTATATAAATTTATTAGTCAAAATTT | |||||||||
gi|239916401|gb|GE325044.1|GE325044 ScPhySHF 231 Saccharum officinarum CoC671 ESTs from the Forward SSH library Saccharum hybrid ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ACACTACTCCCTCCATCCCAGAATGTTAGACGTTTTAGGATTCAAAGTTTGTCTCAAAACGCTTGACGTTATAGCCTAAATCGTGGGTCCCACTCTAGCCTAATCAAGACGTCAATCATCCATCCACCGTTGTCCCAGCGCTTTCCGTCCACTAGCCTAGATGCTAATTGGTGGAGCAGAGCAAAAGTGGTGGCCAGGCATGAAACCAAGGCAATGAATGCGCATGTCATTTCAATTTTTGTAGGGGTATCAGGGACTTTTATCTCCGCCATTGGTTACAGGTCCCAATCCTATGACGTCAAGCAATCTGGGACAGAGGGAGTAGATCCCTAATGCATATGCAATTATGACTTCACCTAGTGGTACCTAACAAAGGAAGGTATGCTTAGTTTACAAAAGGAACACTCATATGAACATGCCTAGGCCAAGGAGCATCAAATTTAACACACACACACACACACACACCAGACACACACATTCATTGGT | |||||||||
gi|268788787|gb|DV637250.1|DV637250 SUR01-144-C07-A-050.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU ATATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): TCCGTCGCCTGCAAAGTAATCGAACTTTGAGCCTGAATTTATCCCTGTTGTTCTGCATCCATCCATCCATCCATCCATCCATCCAACATGAACTTCCTTCGCTCCGCGATTGTCGTTTTTCTGGTTGCCGTTTTCTTCGGCGCGGTGCTCGCCGCCCCACAAGGCGGGAGCAGTTCGGGTTTCCAACCCAGTCCCGGTCTAGTCAACGTCAAGGTCGTGTCGCCAACACCGAATCAGAAGTTCCGTCGTGGAGAAAAGATGGTTGTCAAAGTCGAGACTCGGGCACCACAGGGTCCACAAATCTTCCAGCTGTATGCCGATCTTATTTACGTCGACGATCTGTCACCTCGTCCGTCCCAAGATATCACCAATGGGTTCTTCGGCGGCAAAGAGATCACGGGTGGCAA | |||||||||