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mature miRNA: ATCAAGAAATCTGTGCGAAAA
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|30974885|gb|CD231420.1|CD231420 SS1_16_G02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_16_G02_A012 3', mRN 

ATCAAGAAATCTGTGCGAAAA
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TAGTTCTTTAGACACGCTTTT

EST sequence (targeted fragment marked with yellow):
ATCAACATAGCTTCAGGTAGCTCCAGGGGCGTGCCCTCTTCTCAGCAAATGTGAAAGCATGTTCTGTTTCTTGGTACATGGTTCAGCTCAGGGCTATTCCCTCGATGGACATGCTTGCTAGAAACTCTGTAACACCATCCTCATAATTACAGGAGTTGTTGATGGATACTACAGTGATAAGAACAACTGGACGTGGCTCGTGGCTAAGGGATCAGGTGCAGGGTCAAAAACCCGTGCAACATTCTGTTGTTAAGATGATATATATTCACATGCGAATGATCATCTCGTGGGGAGGTCAACTCTGAAAAAATTCTGTCAAGGCGCAAAAGTGTGCTTTAAGACTTGCTCATACCAGGGTCTGCTTTGAACTCCTCCACTGGGAATGCAACGCCGCATATGTTTTTCGCACAGATTTCTTGATCCCACGGACCCATCAAATGGGATTCAAATTCGGGTTGTGTTCTATCTCGCTCTGAATCCGGTGATAATGCATCTATCCTTGGTTTCTTGGGAGAAGGCTGCATGCTCTCTGG