miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATCATGCTGTGCAGTTTCATC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88362995|gb|CI614351.1|CI614351 CI614351 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

ATCATGCTGTGCAGTTTCATC
| ||||||||||||. ||| |
TCGTACGACACGTCGTAGTCG

EST sequence (targeted fragment marked with yellow):
GGCTCGTCGACTCCTCGTCTCCGCGAGAGAGAGAAAGAGAGAGAGGGGAGGGAGCGGATGTAAACCCAAAACCCTAGCCCGCGTCGTCTGTCGTCGTCGTCGCCGGCGGCGAGATGTCGGGGGGGGTGAACGAGGAGACCTCGGTCTACTGTCGTCGGCCTGCCGTACGAGGCCAACGAGGACATGCTCCGGACGCCTTCGGCCGATTCGGCACCATCGTCTCCGTCAATGTGATAAATGATCAGAGAGTCAGAGGCAAGTGTTACGTTTTTTGTTACTTTCACTCATGCTGATGCTGCACAGCATGCTATCTCAGGCATGGACGGCAAGAGAATAAATAGATTGTTGTTAGAGTGAATGAAGTGCGTATACAGGTGCCTGACAATTCGGGCGTGAAGGTTTTTGGGGAGAACCTGGAAGCGC



gi|58689076|gb|CK077763.1|CK077763 84420rsicen_22760.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indi

ATCATGCTGTGCAGTTTCATC
||||.||.|||| |.|||| |
TAGTGCGGCACGGCGAAGTCG

EST sequence (targeted fragment marked with yellow):
GGGGAGAACTCGCCGGGGCTCGCCATGGCGAGGTCGCTGGGCGACATGAGTGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGTGTGACGTCGCGGCGCGTGACGGGCGCCGACCTGTTCATGGTGCTCGCCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGTGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAGTTCCCGACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCGCCGCAGCCGCCGCGGCCGCCAGGAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTATGCAGTAAAAGAAGATCTTGATGTGCTGCAAATACCTACAACCTCCGTCCCATAAAAAACCAAATCCTAGCAATGAACCTGGATATATGTGTGTCCAGATTCATCGCTGG



gi|88267432|gb|CI379367.1|CI379367 CI379367 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone

ATCATGCTGTGCAGTTTCATC
|||||.||||| || |||||
TAGTATGACACCGCATAGTAG

EST sequence (targeted fragment marked with yellow):
CTGATGATACGCCACAGTATGATTCAAGTCCAAGAAACATGGCAGAATAATCAACACTGCAATTTGCCTCCACTTTATTTCAGATCGTAGTACAGAATACAGACCACATCTGTAGTAGTTCATGCAAAGTTACCGCTAGAGTACTAGCTATGACAAGCAAGTTCATGTGTATGGAGCTCTGTTGTTTTACAGGTTGCTTGAATCAAAAGTAACAAATCCTTTCTCTTTCAAGCTCTCGATGGTCTCCTTGATGCTCGTGTGCAGGGGAGTCAGTTCCAGGCCCAAGCTTTTTATCTTTTCCTTTGATACCTGGTAGATTGGCACTGATGGGTTGTCATCTGCACACTTGTCTGGCAGAGGAATATTGGGATACATCTCACGAATGATTTGGACGAGCTCTGAGTAGTGCGCAACTCTTTCAACCATGCAATA



gi|86860864|gb|CI326466.1|CI326466 CI326466 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

ATCATGCTGTGCAGTTTCATC
|||||||..|| || |.||||
TAGTACGGTACCTCTAGGTAG

EST sequence (targeted fragment marked with yellow):
GACAAACTGAAATTGTGCTATATTTAGATAGAATTCCATGAATCGAGTGAACACAATAATTCCTTCTTATAGAAAAAGATGCTAATGATTTTCATTTAAGAGATGAAAATGGAATATTTTACAAGTCACGGATTTGCTAACAAAATGGAATGGGAACAAGCGGACCTCTATTTCTGATGATACTTCCTTCAATATATCCTCATACAGCATTGTCATACACCTACCTTCTCAAGTAACACAGGATCGATGGATCTCCATGGCATGATTTGTCCTTGTTGGGGACTCAACTCTTTGTTGAAATATCTCAACTTAAAGTATCGAGGAAGAAAACCCTATCGATCCCACCCCTTGATATGGCTGGTAGACTTGCTCCAATAGAAAAATGTATTGAATCCCGATACTGAACTGAGAAGCATTTGAGCTTGAGCCTTCGCGGACATCTCTACCATTGTGAATAGATAAACGTGTCAAATCTTGGCTCATAAAACCAGATCTGGCTATTGCACAGCTGGCTTGGCCAACC



gi|29623219|gb|CB628230.1|CB628230 OSIIEb03K11.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb03K11 5', mRNA sequence

ATCATGCTGTGCAGTTTCATC
||||||||||||| .|||||
TAGTACGACACGTAGAAGTAC

EST sequence (targeted fragment marked with yellow):
CGCAACAGTATTGTTCTCCCTCTTGGTTTGCTTCGCATTGGGTTGTCGCGCCACAGATCTTTGCTATTTAAGGTACTAGCTGATCGAGTTAATCTACCATGCAAGCTTGTCAAAGGAATATATTATACGGGGACAGATGAAGGGGCTATTAACTTGGTTAAAATTGATTTTGACAGTGTTGAATATATAGTTGATCTGATGGGAGCTCCAGGCACATTAATCCCTTCAGATATTTCTGGCAGTCAGTTTCAGGACTCCAACAATAGTCAACTGAGCAATGATGCCATCGAGGAGAGTGTTGCAGAACTATGCATAGCCCTTGAGCAGATTAGTGCTGGATGTAAGAATACAAGTGACATGGGGGGAAGTTCATCTGAACAAAAATCTGCTTTAGCACTTGCAAGTTCACAGCTGGAAGACATCTTCCACACAGAGAACCCGCTTAAACAAAGTACCATATCTGATGAAGGGGAAATTCCGCATCTGATGAAAGTCAACGATGCTCCCATGTATTTAGTGCCCACAGAAGTGGACCCACAGTTTGCACAAAATTTGCAAGACTTGCTCCTGGAGGGCACTGCATTGCTACCCACCTATGACAAACCTGAAATATGCAAACATACTGCTTCTGAAGATGACAAAACTGCAGGATGGTTGGTAATCGCTAAAACAGGTCAAAATTTGCCAAATGGTCATGTAGCGGAAGATTCTCCATTGCAACATGGCAATACCAAAACACTAGCAGTAGTGAATTGTTTCCATGAAGATGCACAGCATGATGTGGGGAATACAGAAAGCATTGGCAGAAATTTGGATTTGCATGATCAGACAGCTCATGCCAT



gi|29665411|gb|CB661686.1|CB661686 OSJNEd04O24.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd04O24 3', mRNA sequence

ATCATGCTGTGCAGTTTCATC
||||| |||||||| |||||
TAGTAGGACACGTCTTAGTAG

EST sequence (targeted fragment marked with yellow):
ACATACACGAAGGTTGATGTGATCTGGCAAGATGGGACAAAAGAATGTGGAGCAAGCTCAACATTGCTCATCCCGATCCACAGTCCAAATGACCATGAATTCTTTCCGGAGCAGTATGTCGTGGACAAGGTTGGTAATGATGTTGATGATTCTTCTGAAACAAAACGTGTGGGTCTTGTTAGAAGTGTTAATGCAAAGGACCGAACTGCATCTGTATCATGGTTTAAGCCTTCATTACACCCAGAGGAGCCCAGAGAAATCGAGTGCAATGAAATTGTGAGTGCATATGAATTGGATGGCCATCCAGATTATGATTATTGCTATGGAGATGTTGTTGTTCGCTTGCCATCTGTTTCACTGCCTGTTGAATCAACCAATAGGGAGAACACCATGGAACTGGATAATGTAAATTCTACAGAAGTATCGGCAACCCCTGTAGCTGATGCAGAGGAACAGTTTCCACAGAAGGAATCCAGTTTGGAATTTACTAGCCTTTCATGGGCTGGTAATATAGTTGGTTTTGAAGACGGTGATATTATAGTCATTTGGGGCGATGGTTCAGTGTCAAAGGTTGGTCCACATGAAATATATGTTGTTGGTCGTGAAGATGATGGTGCCTCACTAGATGATGGAACTGCCAGTGATGGTGCTAGCTGGGAGACTGTTGATGACAATCAAACGGATTTGCCTGATGATTCTGCACAGGATGATTCGCAAAATGTAGCAGATAGTAACATCGAAAGGGAAAACGGTTCATTTAATTCGCAGGATGGAAGC



gi|29655992|gb|CB652267.1|CB652267 OSJNEc01P17.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc01P17 5', mRNA sequence

ATCATGCTGTGCAGTTTCATC
||||.||.|||| |.|||| |
TAGTGCGGCACGGCGAAGTCG

EST sequence (targeted fragment marked with yellow):
CGCGTTCGCCGCCATGGACGGCGAGCTCAAGCTCCAGCCGAACCTCGACTGCGCGTTCAGCGGCACGACGGCGGTGTGCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGGCTGAAGGACGAGCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTCGCCATGGCGAGGTCGCTGGGCGACATGAGGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACGGGCGCCGACCTGTTCATGGTGCTCACCACGGACGGGGTGTGGGACGTGCTGAGCAACGAGGAGGTGGTGTCCATCGTGTGCGCGACGCCGCGGAAGCAGCACGCGTCGAAGGCGGTGGTGGAGGCCGCCGTGCAGCGGTGGCGGGCCAAATTCCCAACGTCCAGGGTGGACGACTGCTCCGCCGTCTGCCTCTTCCTCCACGACCACACCCTCGGCACGGCCGCCGCCGCCTCCACCGCAGCCGCCGCGGCCGCCAGAAAGGCGCGCAGGGCCTCCACCGCCACGCCGCCGGCGAGCTGAGGACACAAAGAAGCTCTCGCTCCGGCGAGCTCGATATTGTCCGTGTTTCTGCAGTTTTTGTTGATCTTGAT



gi|33691317|gb|CF319556.1|CF319556 HD--10-B15.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA library (HD) Oryza sativa J

ATCATGCTGTG-CAGTTTCATC
||||||||||| ||||| ||||
TAGTACGACACTGTCAACGTAG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTAGCGATAAAATAACTCACAACAAAATAGATGATAATTACATAATTTTTTTTAAATAAGACTAATGGTCAAACGAGTATCGAAAAGTTAACATTGTCATCTATGAAAAGAAAAGAAAAGTCTTTTGACCTGTTATGTATGTATTTACATCATGATGCAACTGTCACAGCATGATAACCTTCAATCATTTCTTCCCTGAGGCGCTGGAGGCTGTTGGGTAGATCCTCCTGAAAGCCCAGAGGATGCTGCATCCAATCTGCTTCAGCTTCTTCTCCTTCCTCACCTGATGTTCATGGCTTCTTGCTGCACTGGCCACAGCTGCTTCGTACACCATTGCTGCAGAGAAAAAACTGCTGCTTTTTTTCTTGTGTTCTTGTCAAGAACAGAGTGACAAATTGCTTGCCTGCTTCAGGGAGTTCAGT



gi|88351869|gb|CI624674.1|CI624674 CI624674 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J

ATCATGCTGTGCAGTTTCATC
| ||||||||||||. ||| |
TCGTACGACACGTCGTAGTCG

EST sequence (targeted fragment marked with yellow):
GTTCAAAGTTTTAGTTCCCGAGTTTGCCGATACAATAACAGAAAAGGATTTTTGCTTTGAAGCAGTCAATGCACTATTTTTTCCCTCTTAAAGTAGTTACCTGTCAGATAAGATTCAAATTATGTGAGAGTACAGAGGAATCTCTTTCTGACCTTTGCAGGTGATAAATGATCAGAGAGTCAGAGGCAAGTGTCACGGTTTTGTTACTTTCACTCATGCTGATGCTGCACAGCATGCTATCTCAGGCATGGACGGCAAGAGAATAAATAGACGTGTCGTTAGAGTGAATGAAGTGCGTACTACAGGTGCCCGAGAATTCGGGCGTGAAGGTCTTCGGCGAGAACCTGGAAGCGCAAGGGATGCTTATTGGGACAGAAGGGATACAGAAAGGAGCTATGACCG



gi|86434390|gb|CI094733.1|CI094733 CI094733 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap

ATCATGCTGTGCAGTTTCATC
||||||| |||||||.||||
TAGTACGTCACGTCAGAGTAA

EST sequence (targeted fragment marked with yellow):
TAGATCGTGGTAACAAAATGAACTAATCGGTATAACCGGTAAATACATTATGATAGTTCTGTCCAACTGCTATCCATGGGAAAAAAATGTATGGCACAATTTACATCTTAGTCCCGTAAAAATATGTTTGGTGTTAGACTGAATTAATTAGCCTTGTCATGAATAAGGAGCATCAGAATTCAGAAGAGTCTTGTAAATGCACAACAATCTGCATCAATATTTTATCATGTTCCCTGGTTTATCTTTTGAACAGAAGATGGGGAACATTGTCACAAAGTGCTCAGGAAATAACAAAAGTTCATTCTGCAACTTGATGCATAAAGCAGGGCATAGCAGTCCTCAACATGGATAAGGGCTTTCATCCAATAAAAATAGAAATGAGACTGCACTGCATGATATGAAATTGGAACTAGCGCGCCACAGAGGAAACCCAAGCCCTAACTCCCATTCTTTCTTTCTTTCTTTTTGAATCAACTTTCCATTCTTTGGAGGTTTGCGCATCCTAAGTTTTGTCAAGAGTCTTTCTATTCTATCAAAATTACGAATTTTCCACTGAAAACACTAC



gi|218504203|gb|FG969863.1|FG969863 MA_LYP9_08647 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq

ATCATGCTGTGCAGTTTCATC
|| ||||||||||..| ||||
TATTACGACACGTTGACGTAG

EST sequence (targeted fragment marked with yellow):
TATGTCATCTCAATTGATCGACAATTGCCTCCCAGCGAAGGACAATGGTGGGTTGACTGTTGATGCAGTTGCACAGCATTATGTACAAGTCTGAAAACACCTGCTACACCTTTCTTTTCAACACATTGTATGATCCATTCCGCAAAGGGGCTGACTTTGTCCGTGGATACCCATTTAGTCTGCGCGAGGGGGTTGAGTGCATGCTCTCTTGTGGG



gi|33679016|gb|CF307255.1|CF307255 HDA1--06-D01.g1 OsHDAC1-overexpressing transgenic rice lambda phage cDNA library I (HDA1) Ory

ATCATGCTGTGCAGTTTCATC
||||||||||||| .|||||
TAGTACGACACGTAGAAGTAC

EST sequence (targeted fragment marked with yellow):
GCACGAGGGTTGAATATATAGTTGATCTGATGGGAGCTCCAGGCACATTAATCCCTTCAGATATTTCTGGCAGTCAGTTTCAGGACTCCAACAATAGTCAACTGAGCAATGATGCCATCGAGGAGAGTGTTGCAGAACTATGCATAGCCCTTGAGCAGATTAGTGCTGGATGTAAGAATACAAGTGACATGGGGGGAAGTTCATCTGAACAAAAATCTGCTTTAGCACTTGCAAGTTCACAGCTGGAAGACATCTTCCACACAGAGAACCCGCTTAAACAAAGTACCATATCTGATGGAGGGGAAATTCCGCATCTGATGAAAGTCAACGATGCTCCCATGTATTTAGTGCCCACAGAAGTGGACCCACAGTTTGCACAAAATTTGCAAGACTTGCTCCTGGAGGGCACTGCATTGCTACCCACCTATGAGAAACCTGAAATATGCAAACATACTGCTTCTGAAGATGACAAAACTGCAGGATGGTTGGTAATCGCTAAAACAGGTCAAAATTTGCCAAATGGTCATGTAGCGGAAGATTCTCCATTGCAACATGGCAATACCAAAACACTAGCAGTAGTGAATTGTTTCCATGAAGATGCACAGCATGATGTGGGGA



gi|86855271|gb|CI265197.1|CI265197 CI265197 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat

ATCATGCTGTGCAGTTTCATC
|||||.||||| || |||||
TAGTATGACACCGCATAGTAG

EST sequence (targeted fragment marked with yellow):
TTGTCTGATGATACGCCACAGTATGATTCAAGTCCAAGAAACATGGCAGAATAATCAACACTGCAATTTGCCTCCACTTTATTTCAGATCGTAGTACAGAATACAGACCACATCTGTAGTAGTTCATGCAAAGTTACCGCTAGAGTACTAGCTATGACAAGCAAGTTCATGTGTATGGAGCTCTGTTGTTTTACAGGTTGCTTGAATCAAAAGTAACAAATCCTTTCTCTTTCAAGCTCTCGATGGTCTCCTTGATGCTCGTGTGCAGGGGAGTCAGTTCCAGGCCCAAGCTTTTTATCTTTTCCTTTGATACCTGGTAGATTGGCACTGATGGCTTGTCATCTGCACACTTGTCTGGCAGAGGAATATTGGGATACATCTCACGAATGATTTGGACGAGCTCTGAGTAGTGCGCAACTCTTTCAACCATGCAATATCTTCCATTTGCTGAAGGAACTTCATATGCAAGGATATGTGCCAGGGCAACATCCTTAACGTTTATCCAGCCAAAGCTGAAATTAGGATATGTCGAGGATGATCCATTGATTAG



gi|29635193|gb|CB640202.1|CB640202 OSJNEa13L04.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa13L04 5', mRNA sequence

ATCATGCTGTGCAGTTTCATC
||||.||.|||| |.|||| |
TAGTGCGGCACGGCGAAGTCG

EST sequence (targeted fragment marked with yellow):
GCGCCATCAAGCAGGGCAGGGACCTCATCATCGCCAACCTCGGCGACTCGAGGGCGGTGCTCGCCACCATGTCGGACACCGGCTACCTCCAGGCGGTGCAGCTGACGGTGGACCACAAGCCGAGCGTGCCGGAGGAGGCGGCGAGGATCAAGCGGAGCGGGGGGAGGGTGTTCGGGCTGAAGGACTATCCGGGGGTGATGCGGGTGTGGCTCCCCGGCGAGAACTCGCCGGGGCTCGCCATGGCGAGGTCGCTGGGCGACATGATGCTGAAGCGGCACGGCGTGATCCCGGCGCCGGAGGTGACGTCGCGGCGCGTGACTGGCGCCTACCTGTTCATGGTGCTCGCCCCAGACGGGGTGTGG



gi|66929947|gb|CX116795.1|CX116795 EI106C17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

ATCATGCTGTGCAGTTTCATC
||| |||||||| ||.|| ||
TAGAACGACACGACAGAGCAG

EST sequence (targeted fragment marked with yellow):
AAAAAAGATCTGAGGATCTGGACCACCTCCTAATAGCCCAAGCGTCTGAGCACGACTGATTCACTACCGTCGCTGTCACTACCGTCGGTGACACCACCCTGATGCTTGTCGACATTGCCCTTGAACACCGTCGTCGTGAGACTACAGACGGCGTGGACGTAAACCTGTGGACTACAAACGCGAATACCAGTAAACGACCAGACAGAACGAAACGAGGAATGAACTGAACTGTAAGAAGTAAAGTCGTAGTAATTAGATAACTAGATACACATGACCACGTCCTGGATCAGGACAACCTGACGAGACAGCACAGCAAGATTGCCACTATCAATATAGACTATCGCTATTTTGTGTCAACCGAGACAAGACAATGATGAATAATCAAAATTAAGAACAATAATAGATAAACAGAACTAATCAAAACAATTAGAATAAAAAGAAAAAAAGCAGCAACAACAAAACAAACAGAAGAAGAACCACCCATAAAAGAAAAACAAGAAACAAGAATACATATACATGAATAAACTCGGATCTCGTGCCCTATCAGGGACAAATACGCCAGAGATCCATGAGTGTGCATCACGACTGCATCAAGAACACAGTGGACAGTAACAAAAGGATAGTAGTCAGCTTGATCCAGTCTGCGCGTGTCGGTGTAGAACAACAGATACATCAAATGAGCCAAAGATACGAGATATATATATAATTGTGATTAACAATAAATTAAAGCCAGTGCCACGACACAGATAGGAGGTTGGAGGATTAGAGTAATCGAGCCATCGTAGCACGCGACGCGGAAGACACGAGCAGAACATCACAGCAACGTAACCAGTATTGTTAGTCGCGCCCCCTGGACACACACATCACCAGCCTAGCCAGACTACATAATATCATAGCTGAATCGACGTCCTCTCTTAATGTCCTAACAGCGCAAAGATAAGCAGATAGACGAATGCAACGATATCTGATCTGCGAGCTGATTGGATGACGTGTAGCTGAAAGCCTGCAGGAATCTGAGCCTATAGAGAGTTATGAAGACAGAAAGAAAGAACTACAGACGAACGTCTCGACTCGTGCTACAAGCCTTAGCGTAGCTAGATAGGACGGAGCAACATTACAGTAGCTGTGATGGATATGTAGTATACGAACAGATGAGAGGAGAGTAAGAAACGAATGCAGCATGTCGTGTTCGGACACAGAAAATAGAGCAGGATAGCAGAGACCTCTAGATCCATAATATGATAGGCACACATAAGTCCAGGTGAGTCAT



gi|88727524|gb|CI751179.1|CI751179 CI751179 Oryza sativa (japonica cultivar-group) 1 day after pollination pistil Oryza sativa J

ATCATGCTGTGCAGTTTCATC
| ||||||||||||. ||| |
TCGTACGACACGTCGTAGTCG

EST sequence (targeted fragment marked with yellow):
ATTCCGCTCGCTCGTCGACTCCTCGTCTCCGCGAGAGAGAGAAAGAGAGAGAGGGGAGGGAGCGGAGGTAAACCCAAAACCCTAGCCCGCGTCGTCGTCGTCGTCGTCGCCGGCGGCGAGATGTCGGCGGCGGTGAACGAGGAGACCTCGGTCTACGTCGGCGGCCTGCCGTACGAGGCCAACGAGGACATGCTCCGCGACGCCTTCGGCCGATTCGGCACCATCGTCTCCGTCAAGGTGATAAATGATCAGAGAGTCAGAGGCAAGTGTTACGGTTTTGTTACTTTCACTCATGCTGATGCTGCACAGCATGCTATCTCAGGCATGGACGGCAAGAGAATAAATAGACGTGTTGTTAGAGTGAATGAAGTGCGTACTAGAGGTGCCCGAG



gi|88402514|gb|CI598741.1|CI598741 CI598741 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

ATCATGCTGTGCAGTTTCATC
| ||||||||||||. ||| |
TCGTACGACACGTCGTAGTCG

EST sequence (targeted fragment marked with yellow):
GTCTCGTCGACTCCTCGTCTCAGGAGAGAGAGAAAGAGAGAGAGGGGAGGGAGCGGAGGTAAACCCAAAACCCTAGCCCGTGTCGTCGTCGTCGTCGTCGCCGGCGGCGATATGTCGGGGGCGGTGAACGAGGAGACCTCGGTCTACGTCGGCGGCCTGCCGTACGAGGCCAACGAGGACATGCTCCGCGACGCCTTCGGCCGATTCGGCACCATCGTCTCCGTCAAGGTGATAAATGATCAGAGAGTCAGAGGCAAGTGTTACGGTTTTTGTTACTTTCACTCATGCTGATGCTGCACAGCATGCTATCTCAGGCATGGACGGCAAGAGAATAAATAGACGTGTTGTTAGAGTGAATGAAGTGCGTACTAGAGGTGCCCGAGAATTCGGGCGTGAAGGTTTTCG



gi|117219549|gb|CT858692.1|CT858692 CT858692 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

ATCATGCTGTGCAGTTTCATC
||||||||||||| .|||||
TAGTACGACACGTAGAAGTAC

EST sequence (targeted fragment marked with yellow):
TTATACGGGGACAGATGAAGGGGCTATTAACTTGGTTAAAATTGATTTTGACAGTGTTGAATATATAGTTGATCTGATGGGAGCTCCAGGCACATTAATCCCTTCAGATATTTCTGGCAGTCAGTTTCAGGACTCCAACAATAGTCAACTGAGCAATGATGCCATCGAGGAGAGTGTTGCAGAACTATGCATAGCCCTTGAGCAGATTAGTGCTGGATGTAAGAATACAAGTGACATGGGGGGAAGTTCATCTGAACAAAAATCTGCTTTAGCACTTGCAAGTTCACAGCTGGAAGACATCTTCCACACAGAGAACCCGCTTAAACAAAGTACCATATCTGATGAAGGGGAAATTCCGCATCTGATGAAAGTCAACGATGCTCCCATGTATTTAGTGCCCACAGAAGTGGACCCACAGTTTGCACAAAATTTGCAAGACTTGCTCCTGGAGGGCACTGCATTGCTACCCACCTATGACAAACCTGAAATATGCAAACATACTGCTTCTGAAGATGACAAAACTGCAGGATGGTTGGTAATCGCTAAAACAGGTCAAAATTTGCCAAATGGTCATGTAGCGGAAGATTCTCCATTGCAACATGGCAATACCAAAACACTAGCAGTAGTGAATTGTTTCCATGAAGATGCACAGCATGATGTGGGGAATACAGAAGCAATTGGCAGAAATTTGGATTTGCATGATCAGACAGCTCATGCCATTGCCAACGAGGACCAAAGGTTTTCTGAGGACTCTTGGTGAAGATGCCAGGAAGTAGCAATGGAAACTTGGACAAGTCGAGCTGTTCTAGCACGAAAACAATCAGCTCTGTTATAGATGACGTTGCTGACTATGAAATACCATGGGAAAGATTTTATATTGGAGAGCGCATTGGTCTAGGTTCATATGGGGAAATATATAATGCCAAATTGGATGGCACTGAAATTTGAGTGGAAAAAATTCTTTGACCCAGAATTATATGGGTTGTTGCCCCTAAAACAATTTAAAATGGGAAAGTTTGGGGATCATTTGTAAAGGGTGGAGGGCATTCAAAATGGTTTTTTTTTTTTTTTTGGGAATTTTTGTAAAAAAAACCCCCCCAAAATTTTTTTTAAAATTTTAAACTTGAAAAAACCCCTTTCAAAAAAAGGGGAAGACCTCTTTTCCCCCCCTCTTTTTTTCGTTTTAAGGGCCCAAAAAACAAAAAATAAAAAAATTTGGGTAAAAGAAAAAAAACACACAAGAGAGGGAGGGTTATAAAAAAAAAAGAGGGGGGGTTTTTTGTTTGTGGGGTGGTGTGTGGTGGGGGCGGAGAAAAAAAAAGGAGGGGG



gi|88337264|gb|CI629554.1|CI629554 CI629554 Oryza sativa (japonica cultivar-group) callus 2ppm ABA(abcisic acid) Oryza sativa Ja

ATCATGCTGTGCAGTTTCATC
| |||||||||| .|||| ||
TCGTACGACACGCTAAAGGAG

EST sequence (targeted fragment marked with yellow):
GGCGCGACTGCGAGCGAGAGAGCTTCACGCCCAGATCCGGGCGNGCATGGCGAGGAACCCTACCCGCACCGTCTACATAGGTAACTTGGATGAAAAGGTAACTGAAAGAATATTGTATGAGATTCTTATTCAGCCAGGTCGTGTACTAGACCTATGCATACCTCGTGACAAGGAAACTAGTTGTCCCAAAGGTTACGCTTTTGCTGAGTATGAAACAGAGGAAATCGCACAGCATGCTGTTCAACTTTTTTCAGGACTTGTTCGGCTTTATGGTAAAACACTCAAATTTGCGATCTCTGGACAAGACAAACCCCTCATCAAATGGCAATAATCCACGGATCCAATGGTAAATGGTGGGACAAGAGATTATGGCTTTTCAAACTATT