| mature miRNA: ATCCAAATGTAGACAAAGCA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225395472|gb|FS202732.1|FS202732 FS202732 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3154I04 ATCCAAATGTAGACAAAGCA EST sequence (targeted fragment marked with yellow): AAGCAAAAAAAAACAGCTTCAAGTGACAGTAATGAAGACAGCATCAAAGCTTGCAGTACTCACAGTTCTAGTTCTGCTTCTTGCTGAAGCACACATCTCTGTAGCTGTAACGTGCAGCGCGATTCAGCTGAGCCCTTGCCTTAGCGCGATCACATCAAAGTCAGCACCATCTAAACTCTGCTGCAGCAGGATCAGGCAACAAAAGCCTTGTCTCTGCACTTATCTCAAGAACCCAACTTTAAGGAACTATGTCAACTCCCCTGGTGCTAAGAAAGTCGCTAATACTTGTGGTGTTCCCTACCCCAAGTGTTAATACTGCATTTGAAGAATCATGTGATTCTTGCCAAGTCTTGTATGTGAGAAGTGAAAATAATATGTTTGTTGCACTCTTTATCTCATGAGAGTCACTGTGTGTGCCATCATCTATACTCTTTGTTTTAGTCATCATGTGTTTTTGCTTTGCTTTATTTATGCACTCGTGAATGAAAAAGAGATGAAATTATGCTATGTCTACATCTGGATACAAGTTCTGTCATAACTACTCTTAAGNTATTTTTCTATGACTTTATGTCTCTATCATGCATCATTGGCCTTGGATCTAAATGCAAAAATTTAACCTCCAAAAAAAAAA | |||||||||
gi|117698402|gb|DB680892.1|DB680892 DB680892 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1008CG0 ATCCAAATGTAGACAAAGCA EST sequence (targeted fragment marked with yellow): AGCAACTCTCTCTTATCTACTGAAGCAAAAAAAAACAGCTTCAAGTGACAGTAATGAAGACAGCATCAAAGCTTGCAGTACTCACAGTTCTAGTTCTGCTTCTTGCTGAAGCACACATCTCTGTAGCTGTAACGTGCAGCGCGATTCAGCTGAGCCCTTGCCTTAGCGCGATCACATCAAAGTCAGCACCATCTAAACTCTGCTGCAGCAGGATCAGGCAACAAAAGCCTTGTCTCTGCACTTATCTCAAGAACCCAACTTTAAGGAACTATGTCAACTCCCCTGGTGCTAAGAAAGTCGCTAATACTTGTGGTGTTCCCTACCCCAAGTGTTAATACTGCATTTGAAGAATCATGTGATTCTTGCCAAGTCTTGTATGTGAGAAGTGAAAATAATATGTTTGTTGCACTCTTTATCTCATGAGAGTCACTGTGTGTGCCATCATCTATACTCTTTGTTTTAGTCATCATGTGTTTTTGCTTTGCTTTATTTATGCACTCGTGAATGAAAAAGAGATGAAATTATGCTATGTCTACATCTGGATACAAGTTCTGTCATAACTACTCTTAAGGTATTTTTCTATGACTTTATGTCTCTATCATGCATCATTGGCCTTGGATCTAAATGCAAAAATTTAACCTGCAAGTTTTCAAAAAAAAAA | |||||||||
gi|16248863|gb|BI934391.1|BI934391 EST554280 tomato flower, anthesis Solanum lycopersicum cDNA clone cTOD19N23 5' end, mRNA sequ ATCCAAATGTAGACAAAGCA EST sequence (targeted fragment marked with yellow): ACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGCCAGGGATGTCCATCGGACCCTTCACACTATTGCTCAGGATCAGGGATCACTTGATAGCTCCAAGGCCGAGAGCTTTGTGAAGAATTTGCAAACGACCGGAAGATATCTGCGTGATGTGTGGTAATTGTCTCATGGCAAGCCTATTGTGATTAGAGAAATATTTAGGAAGGCGAGGACTTGCAAAGAACAATCAGCCTTCCAATAGGGTGGGTAAAACAAGTGTACGATTTGTCGTCACTGCTCTACTATTTGTATGATTCTTTTTTTACTTTTGGATAAAAGATTTTTTGGTTGATGTAGTTTATATATATCATTAATATATATGTACAACTGTGGGACAAATATTATGCTAGTATTAATTTTAGGAATATTT | |||||||||
gi|117703944|gb|DB695777.1|DB695777 DB695777 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1055CC1 ATCCAAATGTAGACAAAGCA EST sequence (targeted fragment marked with yellow): ATAAATGGTAGATTGTTACGTACCTCTAAGCAAATGGGCTTAGGTAACAATAATGGTGGCCAGAATCAGTATTATTCTTTGATGAATAATTATTCGTTACGATTTAAATGTTTGAACAAAGGTAGACTTATTGGCGGAGCAGAGAAGAAGGTAGTAGTAGTAGCAACTAAGGCTGTTGGTACTGCGGTTGTATCTGAACCAATTACTACACAAAATTGGAAGATTTCAGATGTAAGTTTAGTCGCAGATAATGTATCAGATCTCATATTTCAAAACTTGAAAGATTTAGTCAAACAAATGCCGCAGAAATTGCATCATTTACAGTACTCCATTGAAAAGGGTATTTTGGATTGCCGGTTCTTCAGTCTTTTAGCAGTTGCAGGGACATTGATTGGTTCATTATTATGCTTTATTGAGGGTTGTTACTTAATCATAGAGTCATACATCCACTATTTTATCGCAATCTCACATAAATCAGACGTTGGACATGTAGTGCAGCTATTGATCGAAGCTATCGATATGTTTCTATTGGGGACTGCTATGCTTACATTTGGAATGGGATTGTATGTCATGTTTGTGGGATCAAGAAATATTAATGTTAAAGGAGATGATGATGATCAATTGTCAGGCAAAAAGTTGTATTATTTTCAAA | |||||||||
gi|117717844|gb|DB726523.1|DB726523 DB726523 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2052K1 ATCCAAATGTAGACAAAGCA EST sequence (targeted fragment marked with yellow): TGAATAAGAAGGAAAACTCCTCTAGAAGGATGAAGGGTGGAATGATCACTATGCCCTTCATATTTGCAAATGAGATATGTGAGAAATTGGCAGTGGTTGGGTTTGGTACAAATATGGTCATTTACTTGACAAATGAACTCCATCTTCCATTAACAAAAGCAGCAAATACACTAACAAATTTTGGTGGCACTGCAAGTTTGACACCATTGTTTGGAGCTTTTATTGCTGATACTTTTGCTGGAAGATTTTGGACTATAACTGTTGCTTCTATCATCTACCAAATTGGCATGATCATATTAACATTATCAGCAATACTACCACAACTAAGGCCACCATCATGCAAAGATGATGAATATTGCAAAGAAGCAAATTCAAGTCAAATAGCCATTTTATATGTGTCATTACTCTTAACAGCCTTTGGGTCAGGTGGAATTAGGCCATGTGTTGTTGCATTTGGGGCTGACCAATTTGATGAAAATGATCCAAATCAAAAAACACAAACATGGAAATTCTTTAATTGGTATTATTTTTGTATGGGATTTTCAATGCTTGTGGCTGTCACAGTAATTGTTTATATTCAAGACAATATTGGATGGGGTGNTGGGANTTGGTGTCCCAACAATTGCTATGCTTATATCNATTGTTGTTTTTATATTTGGATACCCTTTGTATAGAAATTTGGANCCTGCTGGTAGCCCTTTTACTNNNCTAGTGCAANTTTGTGTTGCTGCCTANAAAANA | |||||||||