mature miRNA: ATCCAACGATCGGAAACGATT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|41881477|gb|BX927433.1|BX927433 BX927433 Oryza sativa library (Han B) Oryza sativa cDNA clone p439g08p3, mRNA sequence ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): AAGTGAGTCGAANTGGGCGATGTTAAGCTTGTCGAGTCTAGAGTGACTGGGTCGAGGGGCGACATGTTTTATTATATTTTTTTTTTTTTAGGAGATTTATTTGGATAGATAGGGATGTAAATTAAGCAGGTTGATCGATCCCAAATACTAATACGTGCGGTACCAAATTATTTTTGATCGTTGGATATATTAATATCCATCATATCCAACTAGATCCAATGATAAAAAACAATTTGATACCGTGACATACGGTATTTTTGTTGGACCTTAGCAAATCTCAAATTAAGCAGGTCGATCACAAGGTGCGGTCGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGCCGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAACCCGAGCGCGAAGTCTCCCGGCGTCGGCACGAACGCGAGGCACCCCTCCACCATGACTCCCATCGCGTCCAGCCTCAACAACGGGCCGCCGTCGAACACCAGCGACACCGCCGGCACCGTCACGCTCGTGAACCGGACGAAGTCGTAGCAGGGGTCCAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGATACCGGGGGCAACAGCTGTCGCGCCCACAGGGCAAA | |||||||||
gi|88290298|gb|CI550520.1|CI550520 CI550520 Oryza sativa (japonica cultivar-group) root of seedling 6ppm CdCl2 for 3 days Oryza ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): GGTCAAAAGTCAACAACATTATACATTAAAATACGGTGGGAGGACCTTATTGAGTAACGTTACAAATGCTGAGCCCCACTAACTTATGTGAGCCGGCCACAGATACATGTTTAGCTGTAGAGGCTAGATTTACTTTTATAATTGAGATTTGTTCTTGTCCAATCAAAAGTATCTCGAGGTACTGGTACCTCATGGTGCTAAATCGTTTTCGATCGTTGGATCTAACAATGTCTATCTTACCCAGTTAGATCCAACGATCGAAAACAATTTAGTCCCATGAGGTACCTCGTGGTACTTTTTGATGGATCTAAGCAAATATGTTATTACTCCCTCCGTCATGGATATGCTTGCAAATGGAACAACAGCCGCCGCAACACGGATGTGCGCACACGAAGA | |||||||||
gi|88442168|gb|CI560409.1|CI560409 CI560409 Oryza sativa (japonica cultivar-group) root of seedling in anaerobic condition for 3 ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): CGGCTATACACAGATGTTTATTGAATAAAAATAGAAGAGAGAACAGTGAACGAAAAAGAAAAGAATCAATATACGGTTCCAGATTATATGAGGAAGAAGAAAAAAATAAATATAATCATCGCAAAAATCGAGAAAAGAAAGAAAACATGAACTAGATNATTGATTATTTTTCACTGTTCAAAAGTTGACTGGCGGTTTTTTTATAAATTAAACTGACGTGTGTAATCATATTCGATCGTTGGAATGACTGCTTGTACAAATTTGAGAAAAATCATGATATACATATGTACTTCGAGTTCTTTGCCGGATTCTGCTACCATTTGTATAAGTTTTTTCATCACATCCGCATGACGACATGGATGAATGCTTGGCATCGGACCTGTACCAGGTAAATGCGGA | |||||||||
gi|86488815|gb|CI131448.1|CI131448 CI131448 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage and Panicles two ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTGAAGATTTATTTGGCATAGATAGGGATGTAAATTAAGCAGGTTGATCGATCCCAAATACTAATACGTGCGGTACCAAATCATTTTCGATCGTTGGATATTATTAATATCCATCATGTCCAACTAGATCCAATGATCAAAAACAATTTGATACCGTGACATACGGTATTTTTGTTGGACCTTAGCAAATCTCAAATTAAGCAGGTCGATCACAAGGTGCGGTCGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGCCGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAAGCCGAGCGCGAAGTCTCCCGGCGTCGGCACGAACGCGAGGGACCCCTCCACCATGACTCCCATCGCGTCCAGCCTCACCACCGCGCCGCCGTCGAACACCAGCGACACCGCCGGCACCGTCACGCTCGTGAACCGGACGAA | |||||||||
gi|88834861|gb|CI370164.1|CI370164 CI370164 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): AGTAGTCGTCAGACCCGATAATTTGATTGTCATTCCCTAGTTGATTTATTGAATAATAATGCCTGAACCTTCTTGATTCGGGAATACAATTGGTCGATTACTGATTAGAGCTGGAATCGTTGAAGTTTCTTAATAGAGATTTGCTCCGGTCCAACAAAAAGTACCTCGAGGTACAGGACCTCACGGTACAAATTATTTCCGATCGTTGGATCTAGTACTGTGAGTTACCGGACTACCGGTACGTCGAGGTACTTTTTATTGGACCGAATCAAATATCTTGTTAATATCACTAATTCACTATACTATCCGTTTTTTGTTGGACCGAATCAAATATCTTGTTAATATCACTAATTCACTATACTATCCGTTGTATCTTCGTCCATGTGTAAATAGTGAGTACTCGGTTTACAAGAATTGTTTCTCCAATTTGGCGGTAAA | |||||||||
gi|86503611|gb|CI146244.1|CI146244 CI146244 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): CGGTACCAAATCATTTTCGATCGTTGGATATATTAATATCCATCATGTCCAACTAGATCCAATGATAAAAAAACAATTTGATACCGTGACATACGGTATTTTTGTTGGACCTTAGCAAATCTCAAATTAAGCAGGTCGATCACAAGGTGCGGTCGTCGTCAGCAGGCGCCACGGGGGAAGCCGACGGAGCCGCCGCCGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAAGCCGAGCGCGAAGTCTCCCGGCGTCGGCACGAACGCGAGGCACCCCTCCACCATGACTCCCATCGCGTCCAGCCTCACCACCGGGCCGCCGTCGAACACCAGCGACACCGCCGGCACCGTCACGCTCGTGAACCGGACGAAGTCGTAGCAGGTGTCCAGCCCGGNCCTCCCTCCCGCCACCCGCGGGTACGCCGCCATGGCGCTCCGGAACGCCAGCCGCAGCGCCCTGTACGCCGTCGGCGGCAGCTGCGTGAT | |||||||||
gi|87031223|gb|CI259803.1|CI259803 CI259803 Oryza sativa (japonica cultivar-group) same as Lib 23(supermix) Oryza sativa Japonic ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TAGCACGGCAATAATTAATTTGTCTCGAAGTTTAATACATAACTTACATCGAAGTTTAATACATAACTTACACCATAGTTATATAGACAATGCACAGAACCTAATAACGTTATAGCACGTTATGAATAAAAACATGCATTTTGAAGATTTATTTGGCATAGATAGGGATGTAAATTAAGCAGGTTGATCGATCCCAAATACTTATACGTGCGGTACCAAATCATTTTCGATCGTTGGATATATTAATATCCATCATGTCCAACTAGATCCAATGATAAAAAACAATTTGATACCGTGACATACGGTATTTTTGTTGGACCTTAGCAAATCTCAAATTAAGCAGGTCGATCACAAGGTGCGGTCGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGCCGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGA | |||||||||
gi|88225601|gb|CI225517.1|CI225517 CI225517 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTGGTCTCGAAGTTTAATACATAACTTACATCGAAGTTTAATACATAACTTACACCATAGTTATATAGACAATGCACAGAACCTAATAACGTTATAGCACGTTATGAATAAAAACATGCATTTTGAAGATTTATTTGGCATAGATAGGGATGTAAATTAAGCAGGTTGATCGATCCCAAATACTAATACGTGCGGTACCAAATCATTTTCGATCGTTGGATATATTAATATCCATCATGTCCAACTAGATCCAATGATAAAAAACAATTTGATACCGTGACATACGGTATTTTTGTTGGACCTTAGCAAATCTCAAATTAAGCAGGTCGATCACAAGGTGCGGTCGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGCCGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAAGCCGAGCGCGAAGTCTCCCGGCGTCGGC | |||||||||
gi|88727292|gb|CI750947.1|CI750947 CI750947 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TCTTTGAATTTGGCTCCATAAAGGTCTGAGGCTCCAATGGCCTGGTTCATTGTTGAAGTCTCTTTTCTTGATCGTGTCCGCTATTACTGAATTATCAGTTAAAAAACTAGTGCCTGCAAAGTTGAAGAATTTGGCAATCTCCATAGCTAGTTGCAGTGCCACCAGTTCTGCCTGCAAAGAATATTGAGCTACCTCGCTTTTGGCTTTAATAAAAGAGATTTGCTGAAGTATGTCAAACGGTACTAAATCATTTTCGATCGTTGGATCTAGCTAGGCAGGGTATTAGACCAGAGCAAATCTCTTAATAAAAAGAGCATTGTGTGTCATCGGCATGTGGAAGAAAATACCAATCCCTATGAAAGTGTTCTCCCAAGCTGCATCTATATAACATCTATTGGCCTCCGAAA | |||||||||
gi|29626311|gb|CB631322.1|CB631322 OSIIEb08M12.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb08M12 5', mRNA sequence ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): GTGGACGCGCTGGGGCTGATCACGATGATCGTGGAGGCGGCGAAGGCGGCTCGCCGGAACAAGCGGACGTGCCTGGAGCTGGCCCGGCTGGTGGAGCAGGTCGGCGACCTACTCCGCGCCCTGCAGGAGCAGCCCGGGGTGACGGTGATGGAGCGGCCGGAGACGAGCGCGCCGCTGAGGGAGCTGCAGGAGACGCTCCGGCGAGCGCACGAGCTCGTCGAGTCCTGCCGGCGGCGGGGCAGCTACCCTCGCCGGCTCTTCGCCGGGAAGGAGCAGGGCGAGAGCCTCCGCGAGGTGCAGAGCAAGATCAGCATCTACCTCCAGCTCTTCCCGATCATCTGCCACATCGACGGCACACGCCTCCTCGTCCGCGTCATCGCCGACGGCGCCGCTGCCGCCCGCTCGCCACGCCCCGAGGTATATATACTGTATGGGATTTGCTCCACTCCAACAAAAAGTAGTTCAAGGTACCGGTACGGCGGTACCTCACGGTATCAAATCATTTCCGATCGTTAGATCTAACAACGATCGAAAACGATTTGGTAGCGTAAGGTATTGGTACCTTGAGATACCTTTTGCTGGACCGAAGCAATTCTTGTATTGTATACATGCATGCGTGTATGAAATTGTGTATATATATACATGTATATATATACGTGTACAAGATTACAAATATTTGGTTAAATTCGTGAATTCAAAAAGGATGAAGAAGATGAAGTGCTCATGTCGCT | |||||||||
gi|89174219|gb|CI042112.1|CI042112 CI042112 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TATTGAATATATGCTGAACCTTCTTGATTCGGGAATACAATTGGTCGATTACTGATTAGAGCTGGAATCGTTGAAGTTTCTTAATAGAGATTTGCTCCGGTCCAACAAAAAGTACCTCGAGGTACAGGACCTCACGGTACCAAATTATTTCCGATCGTTGGATCTAGTACTGTGAGTTACCGGACTACCGGTACGTCGAGGTACTTTTTATTGGACCGAATCAAATATCTTGTTAATATCACTAATTCACTATACTATCCGTTTTTTGTTGGACCGAATCAAATATCTTGTTAATATCACTAATTCACTATACTATCCGTTGTATCTTCGTCCATGTGTAAATAGTGAGTACTCGGTTTACAAGAATTGTTTCTCCAATTTGGCGGTAAAGCGTTACAGGCAACTGGGAGGCATGAGGACACCGGAGGCCGTGCCGTCGGCGTGTTGGCAGGTCGCCTCCGCCGGCTTGCCGCCGTCGAACGTGAGCTTGATGTCCTGCAGGC | |||||||||
gi|88221529|gb|CI221485.1|CI221485 CI221485 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): GCATTTTGAAGATTTATTTGGCATAGATAGGGATGTAAATTAAGCAGGTTGATCGATCCCAAATACTAATACGTGCGGTACCAAATCATTTTCGATCGTTGGATATATTAATATCCATCATATCCAACTAGATCCAATGATAAAAAACAATTTGATACCGTGACATACGGTATTTTTGTTGGACCTTAGCAAATCTCAAATTAAGCAGGTCGATCACAAGGTGCGGTCGTCGTCAGCAGGCGCCACGGCGGAAGCCGACGGAGCCGCCGCCGACGTCGTAGAGCACCTCGTGCGTCTGCTGCTGCACGTTCCCGATGAAGCCGAGCGCGAAGTCTCCCGGCGTCGGCACGAACGCGAGGCACCCCTCCACCATGACTCCCATCGCGTCCAGCCTCACCACCGCGCCGCCGTCGAACACCAGCGACACCGCCGGCACCGTCACGCTCGTGAACCGGACGAAGTCGTAGCAGGTGTCCAGCCCGGCCCTCCCTCCCGACACCCGCGGGTACGCCGCCATGGCGCTCCGGAACGCCAGCCGCAGCGCCCTGTA | |||||||||
gi|89182339|gb|CI113708.1|CI113708 CI113708 Oryza sativa (japonica cultivar-group) Panicles two weeks after flowering Oryza sati ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TAGCAAAACTGTTGAAAACTTTATTATTTACTTTGCTCGAAATACAATATCGACTAATTGGAATATTAGATCATTAATCAGAGCTTGCAACACTGAAACTCTCTATTGCTGAAGTACTCTGATTAATTAACATCCTTCTGTTGCGTCATTGACGCTCCACATTGGTTTAGATCTCAGCATCCAATGTAATTAGAGGTTTGTTATCGTCCAACAAAAAGTATCTCGAAATACCGGTACCTCACGGTACCAAATTATTTTCGATCGTTGGATCTAGCTGAGCAGATGAGTTATCGGTACCGTGAGGTATCGGTATCTCGAGATAATTTTTGTTGGACCGAAGCAAATCTAAT | |||||||||
gi|86510131|gb|CI152764.1|CI152764 CI152764 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCTGATAAAAAACAAAAATATCTCAAGCTACCGGCATCTCACGGTACTAAATCGTTTCCGATCGTTGGATCTAACATCCATCCCGCCTAGTTAGATCCAACGATCAGAAATGATTTAGTATCGATACATCGAGATACTTTTTGCTAGATCGAAGCAAAAATCTCTTATACATTATTTGCACGGCACAAGAAGAAGAGCAATTAAGAGATGATGAATACGTATTAATTCAAGCTGGTGGTCTTGCAGTGCCCATCGCCGACTTGAAACTAAGTCCAGTGCATCCACGGAAGAGCTCATGGATGAAGTGTCCCATGGCGTTGCCCGCCAACCCGGCGCAGCCGACGAAGCAGCCGCCGCCGCACACGCATTGGCCACAGCAGCAGCACGGCGGGACGCCGTCGCGACCGAGCGCGCAGGCGAGGCAGAGCTCGCTGTCCGGGCACGTCTGGCACTGGTACGACCACGCCCGCACCAACTGCCTGCCGCCGCCGCCGCCGCCGCCGGCGACGGCGTTGCACTCG | |||||||||
gi|88906350|gb|CI375422.1|CI375422 CI375422 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): GATTGTCATTCCCTATTTGATTTATTGAATAATAATGCTGAACCTTCTTGATTCGGGAATACAATTGGTCGATTACTGATTAGAGCTGGAATCGTTGAAGTTTCTTAATACAGATTTGCTCCGGTCCAAAAAAAAGTACCTCGAGGTACAGGACCTCACGGTACCAAATTATTTCGGATCGTTGGATCTAGTACTGTGAGTTACCGGACTACCGGTACGTCGAGGTACTTTTTATGGGACCGAATCAAATATCTTGTTACTATCACTAATTCACTATACTATCCGTTTTTTGTTGGACCGAATCAAATATCTTGTTAATATCACTAATTCACTATACTATCCGTTGTATCTTCGTCCATGTGTAAATAGTGAGTACTCGGTTTACAAGAATTGTTTCTCCAATTT | |||||||||
gi|88245701|gb|CI245550.1|CI245550 CI245550 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGGAAACAAATCCCAATCTCTTTTATATCTACAAGAGAAAAAAAATAACAGAATCAAACAAACTACGAACAAGAGCACCCATCTCCTATATGAGTTTTTCTTCGGTCCAACAAAAAGTATCTCGAGGTATCGGTACCTCGCGGTACAAAATCATTTCCGATCGTTGGATCTAACGATGCCCAACCCACCCAGCTAGATCCAACGATCGGAAACAATTTGGTACCGTGAGGTATCGGTACCTCGAGTTACTTTTTGTTGGACCGGAGTAAATCTCATCTCCTATATACAAATAACACACAAAGACGAACAAATTAACGTCCATATATCGATCGGTCCAAAGAATGACCCCCGATCGACCTATCTACACGCAAGAACACCTCAAATCATCATCAACGATATGATGTGGTATCAACGATCAGTAGCCGGCGATCTCCGAGCTCTGCTGGTCGCCGTGCTTCTTGCCACCGGACTTCTTCTGCTGGTACTTG | |||||||||
gi|88345932|gb|CI632405.1|CI632405 CI632405 Oryza sativa (japonica cultivar-group) germinating seeds Oryza sativa Japonica Group ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): GATGATGATTTGAGGTGTTCTTGCGTGTAGATAGGTCGATCGGGGGTCATTCTTTGGACCGATCGATATATGGACGTTAATTTGTTCGTCTTTGTGTGTTATTTGTATATAGGAGATGAGATTTACTCCGGTCCAACAAAAAGTAACTCGAGGTACCGATACCTCACGGTACCAAATTGTTTCCGATCGTTGGATCTAGCTGGGTGGGTTGGGCATCGTTAGATCCAACGATCGGAAATGATTTTGTACCGCGAGGTACCGATACCTCGAGATACTTTTTGTTGGACCGAAGAAAAACTCATATAGGAGATGGGTGCTCTTGTTCGTAGTTTGTTTGATTCTGTTATTTTTTTTCTCTTGTACATATAAAAGAGATTGGGATTTGTCCAAAAA | |||||||||
gi|86500187|gb|CI142820.1|CI142820 CI142820 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa ATCCAACGATCGGAAACGATT EST sequence (targeted fragment marked with yellow): GAGAGAAACTTTTTTGTCATTATACTCTCCACGTTATAATAAACGAATACGAAAACTACCAACAGTTTCTAGTATTAATAACTTATAAATCATACCTCCAGCATATGTAACGAATACGAAAACTACCAACAGTTTCTAGTATTAATAACTTATAAATCATACCTCCAGCATATATTTAATTCCAAGATACCAATGGAAACCTATATTATTTGAGATTTACTCCGGTTCAAAAAAAAATATATATTGAGATACCGGTATCTCATTATACCAAATCATTTCCGATCGTTGAATCTAACAATGCACATTATACGTAGCTAGATCCAACAATCAGAAATAATTTTATACCGTGAGGTGAGGTATCGATATCTCGAGATATTTTTTATTAACCGGAGCAAATCTCATATTATGTTATATTATGTTATGTGTCTTGGTCTACTTCAAGACCTGCGCGAAGAGCTCCTTGATAACGGAAGGGCAAGTGGTGGTGAGCAGACGGAAGTCATCGTCCAGCCTCGTCACCTGCCTCAGCTTCCTCTTGCACGAGAGGAAGTCCAGGCACGCCGCCTTGAGCACG |