| mature miRNA: ATCCAAGTCTCTTGGGTCTT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60712250|gb|DN502060.1|DN502060 V048C04.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V048C04 5', mRNA ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): GGGATTACTGGTCACTTGAAAATGGGCATCACCGGAGAGCTGGTTAGGAGTGTCTTCTCCAGAAACCGCTCCGATGGAACTCATGAGAGCAATTTCTTTGGTTTGCTAGTTATTGTTGATGCCTCCTATCTCTCTGCACTATTGATGATCAGTGAGTGTACACTAAGCAGGAAGACTTAAGAGACTTGGTTGTGATGTTCTTTTTTGATGTTATGTTGACCAATTCAGGCAAGAATCACTCCAGGGGATCACAGGAAAAGGTGGAGTTCTGTTAGGCTATACCTTTGTGGTGAAGAGCTTAATTCAGTGCTTGCAGAGGAGGATTCAGCTTCAGTCAAGAGCTCTGAGGCCACTGTTACACAGCCCATGCTAGAGGACACTGAAGACAAAGGAGATGTCCAAAATGAAGAGACCAGAGAAGATATACCGAAGGAAAAGCATAATTCAACTTCCAAATTATTCCGTCAAGAAGATGCAGCGATCATCATTCAGTCCGCGTTCAGAGACTTTCTGGCTAGGCATAAAAGAGAAGAGACCAATTCAAAGGAGGATGGGCAGGAACTTGCTCTGGGAACAGAAAGTCCAAGTAGAGATTCACTAGGCACATCAATTGAAGTTCAGACTGGAAATTCTGTGGAAGTTCTCTCTGTTAAAGAAGAAAATGTGTCTGTGCATCATCCAGTGCAAAAGAGAGCC | |||||||||
gi|24064124|gb|BU872600.1|BU872600 Q044G09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): GGGCTCAAATTTGAAAGCAAGAAAAAGAAAGAGAAGAAGAAATGGCGATTTCTATGATGCGATCTGCTCTCCTTCGAAACTCTCTTCGCACCGCCTCCAAACCCTCTGCTCCTACTAGACGAGGCTTTTCATCCTCTGCCCATCACGACGATGCTTACGAGGCTGCGAAGTGGGAGAAGATAGCGTACTTGGGTGCTGCGACCTGCACTATTTTGGCCATTTATAACTTATCAAAGGGTCACCCTCACTACGAAACCCCTCCTGAGTACCCATATTTGCACATTCGCAACAAGGAGTTTCCATGGGGACCAAATGGACTCTTTGAGGTCAAGGAGGACCATCACTGAGACTTTTGTATTGGATGGAAGTATCGGAAAGTACTTTTGTTTATGACAATTCCTACCGTTTTCTCAGAAAGATCGAAGAGACTTGGATCCTTGAATTTGATGTTGGCACTTCAGTTTTACGGCTTTGCATGTTGGAATTTCTTTTCTGTCCCATTGTCTGTTACCTGTTAAGTGCTCTCAGCAAAATAAAATAAATGAATGATTTGAAATATTATCTCTCTTTAATAAGTTGCAATTTATATA | |||||||||
gi|60712132|gb|DN501942.1|DN501942 V038H02.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V038H02 5', mRNA ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): GGAAGAGTTTGGTTTGCCCTCCAAGACGAGAACCAAGGATGGATACAACCCACTTCTGGATGATTTCAAGAATACCAAATTTTATCTTAGTGTCCCAACTCATAACATAAAATAGGCAGTCTGCAAATCGAATTTCCAAAAGATGATTTATAAGGACACATCAGGTTGACGGGGACCTTGTACAGTCTTGATTGCATCATCTGAAGAGAAATGAGGTCTATAAACCAAGAGATTTGGATTCCATTTAAATGGTGATGATCTATGTGAAGCACTTTTTGCCTTGTTATGCAGTCACGTGTTTGAATTTTGCAGAGCCATTTAAAACTCAATACATTCAAACAATTGTTCTGGGATGTCTATTTGCAACTGGGGACTGCAAGCACTTTTTGCCTTGTTATGCAGTCATATGTAGTGGAATTGTGTAGAGCCATTTAAAACTAAATACAGTCAAACAATTGTTCTGGGATGTCTATTCTCCAAGGAGGAAACTCCACGGTGCAACTGGACTACATGTGCTGAAGCTGAGAAAGGGAGGTTTGCTGATTGGAACCAAAACACCAGAAGCTCCGATGCAAGTAATTTGAATCTAAATTTTTTCTCCTGTTATCCCAAATTTCATACCTTTTTCCCCCCAATAAATGGCCCTAAATTGTATTTGTTAAAAAAAAAAAAA | |||||||||
gi|60712025|gb|DN501835.1|DN501835 V027E09.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V027E09 5', mRNA ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): GACCACACATAATTGAACAAGAAAATCCAATCCCCCCCGAAAAAATATATATTTAGTGAACCACCCACTTGAGCACACAGATTGTTAAAGGAAAATTCATACATGGCACAAGCAATGGCATCGATGGCTGGTCTACGTGGAACATCTCAGGCTGTCCTTGAAGGTAGCCTCCAGCTAAGTGGTTCAAACAGGTTGTTGAATGTGCCTAGCAACACCACTCGTGTGGCCGTGGCACGCCCTGGGCTTGCTGTTAGAGCTCAGCAACAAGTGTCTGGTGAGCTTGAAACTAGCCGTAGGGCCATGTTGGGTCTTGTTGCTGCTGGTTTGGCTTCTGGTTCTTTTGTTCAAGTTGTTCTTGCTGATGCTCTTCCTATCAAACTTGGCCCTCCTCCCCCTCCTTCTGGTGGACTCCCTGAGACATTGAACTCTGATGAATCAAGAGACTTTGATCTG | |||||||||
gi|73876298|gb|DT479036.1|DT479036 WS02524.BR_J05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J05 5', mRNA sequence ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): GGTAATGATCAACTTTGTCATTCTTTATCATCTGAGAATTTTGTTGAACCTCTATTTAGATTCTTGAGGGATGCACATGACCAACAAGATATAGGAGCTCAGAGATTTGGATATCAATTGTTGCTTTCATTTGCCAGCAAAAACAGAAGTGGAATATCATACTTACATGAAGACGTTTATGTTCTGTTGTCATCGTTCCCTGATTCTGAAGTAATTGAAGAGGTTCTTGCCATATTTGAAGTGCTGTCTGGACACCCATATTGCCAATCTAAAATCACTGCATCTGGTGCTCTTGTTTCTATCCGAAGGATCCTTGACTCCCACAGCACAGAATTCCAGAAACAAGCCATTAAAATTCTGCATAATTTGTCGTCAAACAATGATATTTGTTCCCAAATTGTATTGATGGAGTGCATCCCAAAATTGGTTCCTTTGCTTAAGAATGGCAATCTTTCAAGTTATTCTGTAGTTCTACTAAGAAATTTGTGTGATATTGAAGAGGCTAGGGTTTCTGTTGCTGAAACAAATGGATGCATTGCCTCCATTGCTGAGCTACTTGAGAGTGGCAGTCGTGAGGAACAAGAACATGCAGCAGCTATTCTGCTTTCCTTGTGCTCTCAGCGTCTTCATTATTGTCAGCTGGTCATGGAAGAAGGTGTTATCCCTTCCCTTGTTGATATATCTATCAATGGAACTGACAAAGGGAGAGCGATTGCTTTGGAATTGCTCCGGCAGTTAAGAGACATAACTGAATATGATAATGAGCATGAATGTTTTGTTTCTGATATTGATGCTGATAGAGATGCCAGCCACCAAACAATAGAAAAGAAATCTGTTGTTGATGCTGATAGAGATGCCAGCCACGAAACAATAAAAAAGAAATCATCCCCCAAGACATATGGGAG | |||||||||
gi|73880987|gb|DT483725.1|DT483725 WS02523.B21_G14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_G14 3', mRNA sequence ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): ACATCGTATTAAATTCAAATGGCATGTCTATGCTTTCCCTCACAGCCGCTAACATGGACAGACTTGAGACTCATGAGCAGAAAACTATGGCCAACCTCATTGTCCACAAAAGATATGTGAATCTTGTCTTTAAGTTCCCTCTCTAAAGAGAAATATATCAATGTGAGCTTAGTGGACTGACTTGTACTGACTGATAAAGACAAAAAAAACTCAAGAATTTCCGGTTGATGTAGAATTTGTTTCTGATGATGCAACTATTTCTTCCAAGGCTTCCATGTCAATGGTCATATCATCATCAATGTCAGCCTCCTCTACCTCAGTCATTATTTCATCACCATCTCCTACCACAGGTTCAACCCCATTCTGTACCGCGCTGGATTGCACCTGCAGTTCTTCACTTGGTTTATCAGATTCACCCGGCTTTTCTAATGCTTGTGGATACGGATCAGTACAGACAGCCAATGTGGATGTAACCAATAAATTCTTTTCTAGGGCTAGGGCAAGCTTTGAGAGATTTGGATAGAGGTGTCTTGCTGCCAACAAAATCTCGCAAAGCCTCTGTAGGGTAAAAGGAGGACCTTCTTCGAAGTTGTGGAGAGCTGGGGAACAAGAGACAAAAAAAAAAAAAAAAAA | |||||||||
gi|24070035|gb|BU878511.1|BU878511 V048C04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ATCCAAGTCTCTTGGGTCTT EST sequence (targeted fragment marked with yellow): TACTGGTCACTTGAAAATGGGCATCACCGGAGAGCTGGTTAGGAGTGTCTTCTCCAGAAACCGCTCCGATGGAACTCATGAGAGCAATTTCTTTGGTTTGCTAGTTATTGTTGATGCCTACTATCTCTCTGCACTATCGATGATCAGTGAGTGTACACTAAGCAGGAAGACTTAAGAGACTTGGTTGTGATGTTCTTTTTTGATGTTATGTTGACCAATTCAAGCAAGAATCACTCCAGGGGATCACAGGAAAAGGTGGAGTTCTGTTAGGCTATACCTTTGTGGTGAAGAGCTTAATTCAGTGCTTGCAGAGGATGATTCAGCTTCAGTCAAGAGCTCTGAGGCCACTGTTTCACAGCCCATGCTAGAGGACACTGAATA | |||||||||