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mature miRNA: ATCTAAAGGTGATTATTGTGCC
species: Medicago truncatula
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|148766079|gb|ES612773.1|ES612773 MTGland_A024_2007-05-07/MTGlandA024_E07_028_1 Medicago truncatula A17 glandular trichome Med

ATCTAAAGGTGATTATTGTGCC
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TAGATTCCCACTAATAACACAG

EST sequence (targeted fragment marked with yellow):
ACGTTTGATTAATTACTTTTGATTTCAAGCTGTTGTGTGTTGTTCCATTTTCTTAACCTATGGTTTTCTTCGTGCATCCCTCATAGTTAGTTTGAGCATGTATTAAATTAGTTTTGAGATCTTTTTCCTACTATTTTTGTTTCATAAAAGATATTTTTTTTCCTACTAATGCATTTGGAGTTTATAAAAAATCTGTTAAAAAATGAATTTCAACCGATTACGAGTGTATTGTAAGGAAAATGCTAGATATCAAGAATGATTTTATCAAGAAAGATTCAAGAATGACATGACACAATAATCACCCTTAGATTTCAGTCTTATTTATTTACCTTTGATAAAAATAAAAATAAAATACATAACACCCACCACCCTATGATTTCCGGCCAGGTTGAGATTTTATTGGCTAACATTAATTTCAGGACAATTTCTTGATAAAATCTTTCTTGATATATAGCATTGATCGTGTTGTAAATTGGTAATGAAGTGAATTATTAATGAATGTTAGTTTAATTAATAAGGAGTTGACACATATCTAATAGAATTTGAGTTCAACTCCAATTAACGGTATATTTTTGGTGAATAATCTTTTAGTATTATTGTCAATATCCAGGGTCTTGATGCTTGCCCAAAATTTAACAATGAGTCTATGACCTAATTCATATAAACCACTATTCATAAAAAANGGTAATGAAGTCAATTTGANTTACATGTTATGTTTTATTTTGGTTAAAAAACAAACTCATATAAACAATGTTGTGAAAGTGACAAANNNNNNNNACTTTTTTNANTGAGTTTGNTAAACTTTTTNNNNNNTTCNTTGCNNNT