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mature miRNA: ATCTGGAGAAGGTGCATGATG
species: Fagus sylvatica
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|305428690|gb|FR620720.1|FR620720 FR620720 WZOAFSAA Fagus sylvatica cDNA clone WZ0AFSAA3YO21FM2, mRNA sequence

ATCTGGAGAAGGTGCATGATG
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TAGACCTCTTCGAGGAGCTAC

EST sequence (targeted fragment marked with yellow):
AATAATTCCAATTATCACCCCCACCCCCACCAACACCCCCACAATTACAACCACAATAACCACGTGAATGTTGAACCAAACGATTCGTTTGGCACTGGAGGATTTCCTTCAAATAGTGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGTGGTGGATATGGTTCTGGCTATTCTGTACGCAAAAGAGGGTGGCATCGAGGAGCTTCTCCAGATCACGTGGATGGTGTTGTTCGTGTAAAACTTTATGTTGTACCGGTTTCAAGAACAGCAACCGAAGCAGATATCCGACCTGTCTTTGAAGAACACGGGAATGTAGTTGAAGTTGTTATATTGAAAGATAAGAGAACTGGCCAACAACAAGGAAGTTGTTTTGTGAAATATGCAACAGTAGATGACGCTGAAAGAGCTATAAGATCTTTAAACAATCAATATACTTTTCCTGGGGAACATGCTCCCCTCATAGTCAAATATGCGGATGGGGAACGGGAGCGTCTTGGTAATTGTCCTCGTATTGTGGTAGTGGACAAATTG