| mature miRNA: ATGAAGTGTTTGGGGGAACTC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9850614|gb|BE595541.1|BE595541 PI1_56_H08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCACGAGGTGAGCATTTCCTCTCCCTCTCCGGGGCGGGGCTCATCCATGCACGGGGGCGGGATGGGTGTCTTCTTCCTCTAACCGGCCGGCCTCTTGCCAAGAGAATCATATCGCCGTCCATGCATATATGTGATATCCGTCTCCCAGGGCCGGTGATGTTTACACGAGAGGAGGAATTCTAGCCTGCCTCTTCCTCTGATCGTTGTCAGCAAGATTCTCCGTCCAACCGCCAGAACCAAAATCCCTTTTAAAGCAAGGGAGCTCCCAGCTCCCGAGTTTCCCCAAACACTTCATTTCAGCCTTCAGCTATGGAGGCATCATCGGCATCAGCGGTCGAGTCGACCGCCACCGTGTCCGTCTTCGATGTATCATCCAACAAGCAGCGCCCAGACACGGCGAAGCTCGTGCTGAACAGCCCCAGCCCGCCGAGCCTGCGCGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCACGGCCCCCCGGCGGCGGTGGCCGGGCGCCGCGCTGCCCGTGGATCCTCACGGCGCTGCAGTGCGTGTTCCCGGTCCTGCAGTGGGGGAGGACCTACA | |||||||||
gi|57810654|gb|CX611934.1|CX611934 ANR1_27_C05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_27_C05_A002 5', mRNA sequ ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCGCTCCCCCCCACACCCGCTTCAGCCGCCGCCACAGCCCTCGCCGCCGCGCGTAGCAAGCAGGAGCAGCCAGGATGCCGGCTGGCCACGGGCTGCGCTCGCGGACGCGCGACCTCTTCGCGCGCCCCTTCCGCAAGAAGGGCTACATCCCGCTCACCACCTACCTCCGCACCTACAAGATTGGCGACTACGTCGACGTCAAGGTGAACGGCGCCGTCCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTTAATGGTCGCATCATCAGGAAGCGTATCCATGTCCGTGTGGAGCACGTGCAGCCGTCCCGCTGCACAGAAGAGTTCCGCCTGAGGAAGGCAAAGAATGATCAGCTGAAGGCGGATGCCAAGGCACGTGGTGAGGTCATCAGCACCAAGAGGCAGCCATTGGGTCCGAAGCCTGGATTCATGGTTGAGGGCGCCACCATCGAGACCGTCACTCCCATCCCGTACGATGTGGTCAATGATCTCAAGGGAGGATACTAGGTTGTTTTGGTCTATCTACCAGCAGTACCAAGTTCTCCATCTGTGTTACTCCTGTGCGTACAATTTTGCTCACTCTGAGCAGTAGTATGAACCCATTGTGTGTTCCTGTTGAAAGATTTCCCATTCTAAGTGCAAACCTGAGTTTCGCAAAACGCTTTATACCTTGATCTTTGCTTCTCAGAACAAAGATGTGCCTTTTTGAAC | |||||||||
gi|14366926|gb|BG948737.1|BG948737 LG1_330_D08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CGCCACCGGCCGAGCCGAATCGAGCAGCAGCAGCAGCAGCAGCGCCCTCCCACCTTGCCATGGCGACGCAGGCTGCTTTCCTCGCGGGGTTATCGCAGCTCGCCGCACAGCCGGGCCGGGACCGCGCCGTGGCGCCGGCGCGGGTGGCCGTGGCGGCGGTGGGTGTGGGTAGCGCCAAGGTGGGTGTGCGGGTGGGCGTGAAGGCGGGGACCGCCGAGGCCAAAGCGGTGGCGCAGCGCCGCGGGGTGCGGTGCCGGGCCAGCCTGATCGAGCCCGACGGCGGGCGGCTGGTGGACCTGGTGGCGCCCGAGGAGGGCGGGCGGCGCGCGGCGCTGCGGCGGGAGGCGGCCGAGCTGCCGCACCGCCTGCGCCTCAGCCGCGTCGACAAGGAATGGGTCCACGTCCTCAGCGAAGGGTGGGCGAGCCCGCTGCAAGGGTTCATGCGCGAGCATGAGTTCCTCCAAGCACTTCATTTCAATGCCATCCGCGGCGCGGATGGCAGGATGGTCAACATGTCCGTCCCCATCGTGCTCTCCCTTGGGGACGC | |||||||||
gi|33110677|gb|CF074018.1|CF074018 FE1_9_D07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_9_D07_A002 5', mRNA ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): ATTCTCCATTTCCCCACTCGCTCCCTCTCTCCCGCTCGTCAGTGGGAGTGTGCGTGCGGGGCTAGCGCCGCTAGGGTTTCTTCCGCGAGCCCACCATCGCCGGCCGGCCGCGGGCGATCTGGGTCTCGATCCGGCGCCCGCCCTAACTCGGGTTCGCGGGGCGCAAGGCCAAGGGCGCGAGGACATGAAGTCGTCGCTGCGGAAGCTGCGGGGCTTCGCGCTGCAGCGCCACGAGCAGCGGGTGGACCGGGACCGCGGTGGCCGGGGCCACTCCACCGCCGCCGCCGCCACGGCGGCGGACGAGCTCCTCGCGGCTGCCCAGGATATGGCTGATATGAGGAGCTGTTATGATAACTTGCTTTCTGTTGCTGCAGCAATTGCAAATAGTGCATATGAGTTCTCTGAAGCACTTCAAGAAATGGGAACTTGTTTGCTTAAAAGAGTTACGCCAAATAAGGATGGAATAAATGATAAAGTTTTGCTGTTGCTTGGGAAATCACAATTTGAACTTCGGAAACTTGTAGATAGTTATCGTGTGCATGTTCTTAATACCATCACCACTCCATCGCTGTCGCTTCTTAATGAGCTTCAAACTGTGGAGGAAATGAAGCGCCAATGTGATGAAAAAAGAGAATTGTACGAATTCATGCTAAATGCGCAGAAAGAAAAGGGGAGGTCTAAGAATGCTAAAGGTGATAATGGAGCATCAGAGCAATTGAAACAAGCTCA | |||||||||
gi|45953073|gb|CN127215.1|CN127215 RHOH1_21_E08.g3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_21_E08 ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CTAGCGCTCCCCCCCACACCCGCTTCAGCCGCCGCCACAGCCCTCGCCGCCGCGCGTAGCAAGCAGGAGCAGCCAGGATGCCGGCTGGCCACGGGCTGCGCTCGCGGACGCGCGACCTCTTCGCGCGCCCCTTCCGCAAGAAGGGCTACATCCCGCTCACCACCTACCTCCGCACCTACAAGATTGGCGACTACGTCGACGTCAAGGTGAACGGCGCCGTCCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTTAATGGTCGCATCATCAGGAAGCGTATCCATGTCCGTGTGGAGCACGTGCAGCCGTCCCGCTGCACAGAAGAGTTCCGCCTGAGGAAGGCAAAGAATGATCAGCTGAAGGCGGATGCCAAGGCACGTGGTGAGGTCATCAGCACCAAGAGGCAGCCATTGGGTCCGAAGCCTGGATTCATGGTTGAGGGCGCCACCATCGAGACCGTCACTCCCATCCCGTACGATGTGGTCAATGATCTCAAGGGAGGATACTAGGTTGTTTTGGTCTATCTACCAGCAGTACCAAGTTCTCCATCTGTGTTACTCCTGTGCGTACAATTTTGCTCACTCTGAGCAGTAGTATGAACCCATTGTGTGTTCCTGTTGAAAGATTTCCCATTCTAGGTGCAAACCTGAGTTTCGCAAAACGCTTTATACCT | |||||||||
gi|9848327|gb|BE593254.1|BE593254 WS1_99_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): GCACGAGGCAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTTAATGGTCGCATCATCAGGAAGCGTATCCATGTCCGTGTGGAGCACGTGCAGCCGTCCCGCTGCACAGAAGAGTTCCGCCTGAGGAAGGCAAAGAATGATCAGCTGAAGGCGGATGCCAAGGCACGTGGTGAGGTCATCAGCACCAAGAGGCAGCCATTGGGTCCGAAGCCTGGATTCATGGTTGAGGGCGCCACCATCGAGACCGTCACTCCCATCCCGTACGATGTGGTCAATGATCTCAAGGGAGGATACTAGGTTGTTTTGGTCTATCTACCAGCAGTACCAAGTTCTCCATCTGTGTTACTCCTGTGCGTACAATTTTGCTCACTCTGAGCAGTAGTATGAACCCATTGTGTGTTCCTGTTGAAAGATTTCCCATTCTAGGTGCAAACCTGAGTTTCGCAAAACGCTTTATACCTT | |||||||||
gi|9299360|gb|BE357803.1|BE357803 DG1_22_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CAGCTCCTGGTAGATATGTTCCGAAGTTTAAACTCGGCAGCGATAGCGGCGGCAGCTCTGGAGGCAGCCAGAGACCAGATGTGCGCTCCCGTGATGAAGACCGCTGGGGTCCACCCGGTGGCAGCCAGAGACCAACAGATGCGCGCCCACGAGATGAAGACCGCTGGGGTCCACCTGGTGGGAGCCGGAGACCATCAGATGTGCGCCCACGCGATGAAGATCGCTGGGGTTCACGTGGAGAGCGCTCACGCCTTGATGAGCGTTCACTCAGGCAAGATGGCCCTCCTGCACGACAGGATGCACCTCCACCCCGCCAAGATGGCCCTCCTCCAGCTACTGACCGCTGGCGCGGTGGACCAAGATTTTCCTCAAACTCTTCATCAACCTGGTCCAACAGGCCACGGAACTGATGCCATGCCCCTGAGATGTTTTGCCATAAATGTCATTGTGGAGACATCCGTGCACAATGTCTGCTAGTGATCTCGGCTAGAATGGTCACTTGAAATTTGTTTTCTGTTTTGCCGACTGCACCCAAATTTTTGGAGCTTGTCTTTTTGGCTATGGCACCTTTCCGGTCAATGTTTTGACGTTCCAAGTTGCTATACTCCATGGATATTTGTGTCGCTGTTTGTCAGTAATACTT | |||||||||
gi|7659735|gb|AW745997.1|AW745997 WS1_38_A06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AAGATTGGCGACTACGTCGACGTCAAGGTGAACGGCGCCGTCCACAAGGGGATGCCGCACAAGTTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTTAATGGTCGCATCATCAGGAAGCGTATCCATGTCCGTGTGGAGCACGTGCAGCCGTCCCGCTGCACAGAAGAGTTCCGCCTGAGGAAGGCAAAGAATGATCAGCTGAAGGCGGATGCCAAGGCACGTGGTGAGGTCATCAGCACCAAGAGGCAGCCATTGGGTCCGAAGCCTGGATTCATGGTTGAGGGCGCCACCATCGAGACCGTCACTCCCATCCCGTACGATGTGGTCAATGATCTCAAGGGAGGATACTAGGTTGTTTTGGTCTATCTACCAGCAGTACCAAGTTCTCCATCTGTGTTACTCCTGTGCGTACAATTTTGCTCACTCTGATCAGTAGTATGAACCCATTGTGTGTTCCTGTTGAAAGATTTCCCATTCTAGGTGCAAACCTGAGTTTCGCAAAACGCTTTATACCTTGATCTTTGTTCTC | |||||||||
gi|30976902|gb|CD233437.1|CD233437 SS1_2_B03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_2_B03_A012 3', mRNA ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): CAACAAAATCTCTCATTCTGATTCTTTCATCAGTTCATACCCCCTTTTAATTGATTGTTCTGTTCCCCCAAACAATTCATATTTGGAAAACAAGGAATTTTTTTTGAGGGCAAAAAAAAAAACCCAAATCATTCCCCCCCCAGGGGAAAAGGGGACTGTGGCAAATGCAACCAACAAAAAATTACTTGCCCCAAAATCAACAATTGAGCGAGCAAATTATTGAGGCAGTGTTGCAATGATGTGCCCCTCTTTGCTGGCATTCAGCATTACATAAACTCTTACAAAAAACAAAATTGTGAAGGAAGGCAGG | |||||||||
gi|31346916|gb|CD431273.1|CD431273 ETH1_7_D01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_7_D01_A002 5', ATGAAGTGTTTGGGGGAACTC EST sequence (targeted fragment marked with yellow): AAGTGAGCATTTCCTCTCCCTCTCCGGGGCGGGGCTCATCCATGCACGGGGGCGGGATGGGTGTCTTCTTCCTCTAACCGGCCGGCCTCTTGCCAAGAGAATCATATCGCCGTCCATGCATATATGTGATATCCGTCTCCCAGGGCCGGTGATGTTTACACGAGAGGAGGAATTCTAGCCTGCCTCTTCCTCTGATCGTTGTCAGCAAGATTCTCCGTCCAACCGCCAGAACCAAAATCCCTTTTAAAGCAGGGGAGCTCCCAGCTCCCGAGTTTCCCCAAACACTTCATTTCAGCCTTCAGCTATGGAGGCATCATCGGCATCAGCGGTCGAGTCGACCGCCACCGTGTCCGTCTTCGATGTATCATCCAACAAGCAGCGCCCAGACACGGCGAAGCTCGTGCTGAACAGCCCCAGCCCGCCGAGCCTGCGCGAGGAGCTCGTCGGCGTGGTCGGCAAGGCGTTCCGGCCACGGCCCCCCGGCGGCGGTGGCCGGGCGCCGCGCTGCCCGTGGATCCTCACGGCGCTGCAGTGCGTGTTCCCGGTCCTGCAGTGGAGGAGGACCTACACCCTCAAGTCCTTCAGGAGTGACGTCATGGCCGGCCTCACTCTTGCCAGCCTTGGCATCCCTC | |||||||||