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mature miRNA: ATGACAGAAGAGAGAGAGCAA
species: Cajanus cajan
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|284463297|gb|GW357325.1|GW357325 CCSCRAFL09e02R Pigeonpea Scarabaeoides flood stressed cDNA Library Cajanus cajan cDNA, mRNA

ATGACAGAAGAGAGAGAGCAA
||| ||||||.||||||||
CACTTTCTTCTTTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
ATCCAACGCGTTGGGAGCTCTCCCATATGGTCGACCTGCAGGCGGCCGCGAATTCACTAGTGATTAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTGCCAACTTCATTTTTATTTCTAACAAAATAATTGCATGCTACAAATACAAACATAAGAGATTGTACATAATACTACCAACACACAAGTTCCTACATTATTATCACCTAGGAGAGACACTTATTCACTGCCCTACAAACACAGAACAACACACCAACTTAACATGGGAACAAACGTAGAAAGCAGGCCCTTCAAGATTACACATGATCTTCATCAAGAAGCCTTTGATCAAAGTGCCAAACACCATGACCCTTTCCAACTAATCTCAGTTGAGCCACATACTCTGCAATCTTTTTAATCGATTTAACCTGCTCATACAAAAATTCGCTCTCTATGAAATCTGCCAGTTGAGGATCATTGTTACGGCTTGCCACACTATGAACATGAAGAAGTTTCTCATTTGTCAACTTCTCCAAAGACAAAGCTAATTCCATGGCATACAAGGCATCTCCTTTCTCCGAATGCTCAAATTCTGAGGGAGGACTTGTAATAGGGTGCAGCACCACTCGTCCTCCACGAATGTTCTGATACTTCATAAACTTTTCAGCGTGCTCTCTTTCTTCTTTCACTTGATTCCTTGAAGAATTTGGCGAGCCCTTGAGAGCTATGTTGTCTCTGTCGAAATAGGCAACAGGGCATGCGTCCCATACGAAACTTGTATCCACTTGGATCTGTCATGCTTGCCCTTCGACTCATTGAATATCTGAGAACAGGAACATTGACTATGGACGGCAGGAACTCTTACTCTCGAAGGGTCATTACCCAAAAAGTGGAGCGGACAACGAGTCAAACCCAAAATGTCCACCTGGGAACGGAAAAAAAACTTAGGACCGAACTGGAGT



gi|113075839|gb|EE604924.1|EE604924 CCUPAS120LF04h12F Pigeon pea Leaf cDNA Library Cajanus cajan cDNA clone CCUPAS120LF, mRNA se

ATGACAGAAGAGAGAGAGCAA
||||||||||||||||||| |
TACTGTCTTCTCTCTCTCGCT

EST sequence (targeted fragment marked with yellow):
TAGCCGACAGTACATTGGCAGTGAATCGAGCTCGGCACCATGATAGGGAAAGAATCAACTCAAGAAAATGCACCTTACAAACATTTCCAGATAAGATGAGATATGCTTTCATCTCAACTCGCTCTCTCTCTTCTGTCATCCTGGGGATGTATTTGTCAAACTATTCCTATGTCACATTCAAATGATCAAGATTGCATTTAGATAAATAACTTTTAACATGTTAAACTAAAAAAAACGGCTCACAAATC