mature miRNA: ATGCACTGCCTCTTCCCTGGC species: Fragaria vesca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|158374151|gb|EX682536.1|EX682536 JS7AO04JG Salt and heat stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesc ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CTAAACTCTCTCATAGCTAGAAGCTCAAAATGGCAGGCATGGGAGCCAGAATTGTGGGTATAGTCCTTGTTTTTGGCATGGTCATGATGCCAAGCTTGGCCAAAGACTACACTGTTGGAGACTCCTCTGGCTGGGCTACTGGTGTTGATTACACCACTTGGACGAGTGACAAGACCTTCGCAGTCGGCGATAACCTAGTGTTCAACTATGGAAGTGGGCACACGGTGGATGAAGTGAGTGGTACTGACTACAAGAGTTGCACCACAGGCAACTCAATCACTAGTGACAGCAGTGGCGCCACCACCATTCCTCTCAAGACTGCCGGGACACATAACTTCATTTGTGGCATTGTTGGGCATTGTGGAATGGGCATGAAGCTCTCTGTGACCGTTGGATCAGGATCAACCACCACCACACCAGCTGCCAAGGGTGCAACCACACCGCCTTCCACAGACGGTAGCAACACCACGGAAACCACTCCAGCAGTGACCACACCCACAACCACATCATCCACTGGTCTAGGAACTAGTCTCTCTAGCTCTCCTATTATGGCTTTGATGACTATTGCTGGGGTTGTTCTGAGTGTGTTGGTGCTTTCATAACTTGGGTAGTGGAGGCTTAGTTGTCTTGCCAGGACAGAGGCAGTGCTTTGTAATTTCTTCTTTTTAATTTGCAGTACCTTCTGAGTTTATTTAAATTCTATTGAATATGTATGAGTAG | |||||||||
gi|158354569|gb|EX662961.1|EX662961 JS1C358JG Salt stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA cl ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): ATTTCTTCATATTTTGAAAGAGATGAACTCTCAGGGAAGAGGCAGTGCCAGATTTACTGTTGTGCAGGTGGTTGCAGTTCTACTATGCCTCATGGCAGTTCAGTATGTTGATGCAGCTACCTACACAGTTGGAGACTCCGGTGGATGGAGCTTCAATACTGGTAAATGGCCCAACGGAAAGCAATTCCGAGCCGGTGATGTTCTAATTTTCAACTATGACTCTACACTTCACAATGTGGTAGCTGTGGGGAGGGGTGGTTATAGCAGCTGCACAACCCCTAGAGGTGCCAAGGTTCTGACATCGGGGAATGATCGGGTGAAGCTCGCCAAAGGACAGAACTACTTCATTTGCAACTTTCCAGGCCACTGCGAGTCCGGGATGAAGGTTGCCATCAATGCTGTCTAATGGTCGATTTATGTACGTACGCTAGCGTTTATTAGTCTAATATATCAATCCGCAATAAGAAAAATGTCACGGCCGGTTAGTCGGACATAATAGAACCGTGGACATATAAGACGGTTTTATGTATTACATATTGAATATTTGATTGTGAAACTTAACGC |