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mature miRNA: ATGCACTGCCTCTTCCCTGGC
species: Fragaria vesca
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|158374151|gb|EX682536.1|EX682536 JS7AO04JG Salt and heat stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesc 

ATGCACTGCCTCTTCCCTGGC
| |||||||||||  ||||||
TTCGTGACGGAGACAGGACCG

EST sequence (targeted fragment marked with yellow):
CTAAACTCTCTCATAGCTAGAAGCTCAAAATGGCAGGCATGGGAGCCAGAATTGTGGGTATAGTCCTTGTTTTTGGCATGGTCATGATGCCAAGCTTGGCCAAAGACTACACTGTTGGAGACTCCTCTGGCTGGGCTACTGGTGTTGATTACACCACTTGGACGAGTGACAAGACCTTCGCAGTCGGCGATAACCTAGTGTTCAACTATGGAAGTGGGCACACGGTGGATGAAGTGAGTGGTACTGACTACAAGAGTTGCACCACAGGCAACTCAATCACTAGTGACAGCAGTGGCGCCACCACCATTCCTCTCAAGACTGCCGGGACACATAACTTCATTTGTGGCATTGTTGGGCATTGTGGAATGGGCATGAAGCTCTCTGTGACCGTTGGATCAGGATCAACCACCACCACACCAGCTGCCAAGGGTGCAACCACACCGCCTTCCACAGACGGTAGCAACACCACGGAAACCACTCCAGCAGTGACCACACCCACAACCACATCATCCACTGGTCTAGGAACTAGTCTCTCTAGCTCTCCTATTATGGCTTTGATGACTATTGCTGGGGTTGTTCTGAGTGTGTTGGTGCTTTCATAACTTGGGTAGTGGAGGCTTAGTTGTCTTGCCAGGACAGAGGCAGTGCTTTGTAATTTCTTCTTTTTAATTTGCAGTACCTTCTGAGTTTATTTAAATTCTATTGAATATGTATGAGTAG


gi|158354569|gb|EX662961.1|EX662961 JS1C358JG Salt stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA cl 

ATGCACTGCCTCTTCCCTGGC
  |||||||||||||||||.
ACCGTGACGGAGAAGGGACTC

EST sequence (targeted fragment marked with yellow):
ATTTCTTCATATTTTGAAAGAGATGAACTCTCAGGGAAGAGGCAGTGCCAGATTTACTGTTGTGCAGGTGGTTGCAGTTCTACTATGCCTCATGGCAGTTCAGTATGTTGATGCAGCTACCTACACAGTTGGAGACTCCGGTGGATGGAGCTTCAATACTGGTAAATGGCCCAACGGAAAGCAATTCCGAGCCGGTGATGTTCTAATTTTCAACTATGACTCTACACTTCACAATGTGGTAGCTGTGGGGAGGGGTGGTTATAGCAGCTGCACAACCCCTAGAGGTGCCAAGGTTCTGACATCGGGGAATGATCGGGTGAAGCTCGCCAAAGGACAGAACTACTTCATTTGCAACTTTCCAGGCCACTGCGAGTCCGGGATGAAGGTTGCCATCAATGCTGTCTAATGGTCGATTTATGTACGTACGCTAGCGTTTATTAGTCTAATATATCAATCCGCAATAAGAAAAATGTCACGGCCGGTTAGTCGGACATAATAGAACCGTGGACATATAAGACGGTTTTATGTATTACATATTGAATATTTGATTGTGAAACTTAACGC