| mature miRNA: ATGCACTGCCTCTTCCCTGGC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49012294|gb|CO201119.1|CO201119 RTCNT2_3_F06.g1_A029 Root control 2 (late) Pinus taeda cDNA clone RTCNT2_3_F06_A029 5', mRNA ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CCGTTCCCTCGTGCTTACTGGTTTCCTTGGGTCTGCAGTCTGAGCTTTTCTCGGCTGACTTTAAGGGCGGGCATTGACTCAGAGTATTTGGGCTCTCACTCTCTGGTCATCTACATTTCTATATATAGAGAGAGATCGAGGAACAGATTATTGCAGTCTCCTCTGCTTTTTGCTTTGAGTTAGAGCTTAGAGTTGTGGTTGTGATTGCCAAGTGAGTGAAATGGCTCAGGGAGGAGGTAGTGCAGGCTTACTTTTGGCTGTTGCACTTCTGATTGTTTTTGTGAGCCAGTGTTCTCATGCTGCAGGGGTCTCGTACAAAGTTGGTGGCGCTAATGGATGGGGTTTGCCAAAAACTAATTATCTGGCCAAGGCTCCCCGGTTCCATGCTGGAGACACGTTGAGCTTTCATTACACCGCCGGAGCACACGATGTAGTGGCGGTGGGTTCGAAAGACTACAAAAGCTGCAAGGTGACAGGAAATAGTAAACGATATACCTCCGGAGCCGACCAGATTCCATTGAAGAAGGGTATGAACTATTTCATCTGCAGCTTTGCTGGCCACTGCGCTTCGGGCATGAAGATTGCGATCCACGCAATTTTAATGATCTG | |||||||||
gi|68085339|gb|DR178877.1|DR178877 RTMNUT1_14_B12.g1_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_14_B12_A029 ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGTCGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCAAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGGCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGGGCGCGAATTACTTCATCTGCGGTGCTCCTGGCCACTGCACTGCCGGAATGAAGATGGCAGTCATCGCAACTTAAGTCCCAATCTGCTGATACACATACTATATATAAAAATAATGCTGCGCTATAATTTGCGTTCCGCCCCACGCCTCTTTATATAAACGCAGTTGTCTATAATGTGACTTTTTGAAAGCTTTTCCGGTGGGTTTTTCCGGTCAAAATCCGGCAGCAATTTATTGGAATGGCAAGTTTGATAGCTAGTTTCTGGAGAATCAAACTGTTTATAAACTATTTATATCTCTATTTAGCAGAATATAAACTGTTTATATCTCTATTTAGCAGAATCGGAGCTCAGTCTCTGTCATGTATTGTGAATTCTGATCGTGTTTGTTTACCCAGAATGATATAGATGGTTTAACAACTCTTCTTGGGCT | |||||||||
gi|34351436|gb|CF393019.1|CF393019 RTDR3_18_F09.g1_A022 Loblolly pine roots recovering from drought DR3 Pinus taeda cDNA clone R ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GACATGGGTTCAGCAACAGTCATAGTTTTGTCCCTTGCAATGGCGATAGCCATGGTTATACCCTCTGAGGCGACGCAGTACACGGTGGGAGGTACTGCCGGATGGGACGCCAGCACTGACTTCAATACTTGGTTAATGAACAAGACATTTGTAGTGGGGGACACTCTCGTTTTCCAATATTCGTCGCTGCACAGCGTAATGGTGGTGAACAAGTCGGACTATGATTCCTGCCAGACGAGCAACGCCCTGCAATCGTTCACTGACGGCAACACGCAGATCAAGTTATCGAAACCCGGCAGCATGTATTTCATATGCGGAACTCCCGGCCACTGCGTCGGCGGTATGAAGATGGGCGTGAACAACATTCAGGCCGCCACTGCCAGTAGTCCTAGCAGTCCGCCAGGTGCCTCGGCCTCGCCTTCGAAACCCAACCCTACTACTCCCTCCACCACCTCTCCTACCACTCCTGCTAAACAATCGCCAGTTGGGAAGAGCGCTGCCACCTCGATTTCACATAGCCATGGGAACTTTTTTGGAATCGTTATTGCGGTGGTCGGATTACTATTGTCATCGTTCATCTGATTTATTGGAAGTTCAGCCAGGCCAGAGGCAGTGCTTGTAGCCAGGCAGGAGACTGTTCGTAATGTGATTTGGTGAAAAACCAGTATTTATTAATAAGGTTGTAACCCGTATTTGATAGACTGAACAGCTGTTCTTTCTTTTTATATTTGTATGGCTCAATAAATCCTAGTTCTTAACGGACACTGTCAAATTTCTCCCCTTTGTTTTGGCTGGAATGGGTTCCAGTCT | |||||||||
gi|34492927|gb|CF475555.1|CF475555 RTWW2_12_H06.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_12_H06 ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CCCGGGGCAATGGCGATAGCCATGTTTATACCCTCTGAGGCGACGCAGTACACGGTGGGAGGCACTGCCGGATGGGACGCCAGCACTGATTTCAATACTTGGTTAATGAACAAGACATTTGTAGTGGGGGACACTCTCGTTTTCCAATATTCGTCGCTGCACAGCGTAATGGTGGTGAACAAGTCGGATTATGATTCCTGCCAGACGAGCAACGCCCTGCAATCGTTCACTGACGGCAACACGCAGATCAAGTTATCGAAACCCGGCAGCATGTATTTCATATGCGGAACTCCCGGCCACTGCGTCGGCGGTATGAAGATGGGCGTGAACAACATTCAGTCCGCCACTGCCAGTAGTCCTAGCAGTCCGCCAGGTGCCTCGGCCTCGCCTTCAAAACCCACCCCTACTACTCCCTCCACCACCTCTCCTACCACTCCTGCTAAACAATCGCCAGTTGGGAAGAGCGCTGCCACCTCGATTTCACATAGCCATGGGAACTTTTTTGGAATCGTTATTGCGGTGGTCGGCTTACTATTGTCATCATTCATCTGATTTATTGGAGGTTCAGCCAGGCCAGAGGCAGTGCTTGTAGCCAGGCAGGAGACTGTTCGTAATGTGATTTGGTGAAAAACCAGTATTTATTAATAAGGTTGTAACCTGTATTTTATAGACTGAACAGCTGTTCTTTCCTTTTCAATTTGTATGGCTCAATAAATCCTAGTTCTTAACGGACACTGTCAAATTTCTCCTCTTTGTTTTGGCTGGAACGGGTTCCAGTCT | |||||||||
gi|12483475|gb|BG040890.1|BG040890 NXSI_116_C12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_116_C12 5' sim ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AAGAAATTAGAGATCTAATCTTACTCTGAGGCGTGTCGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCGAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGTCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGNNNGCGAATTACTTCATCTGCGGTGCTCCGGGCCACTGCACTGCCGGAATGAAGATGGCAGTCATCGCAACTTAAGNNNCAATCTGCTGATACACATACTATATATAAAAATAATGCTGCGCTATAATCCGCGGTTCCGCCCCACGCCTCTCTATATAAACTGTTTATATC | |||||||||
gi|67553768|gb|DR094413.1|DR094413 STRR1_14_A04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_14_A04_A033 5', mRN ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTAGTTGGGGGTCGCCAGGGGTGGGGTTTCCAGACTAAGTCATGGACTACTGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCTCACAACCTGGTGGTAGTGAGCCCTGGAGCGTACAGGAGCTGCACCACGGGAGGGGCTCGTCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAAGAAGGGCGCGAACTACTTCATCTGTAGTGTTACTGGCCACTGCGCTGCTGGAATGAAGATCGCAGTCACTGCAACTTAGTCCTACTCTGTAGATACACATACCATATAAATAATGCTGCGCTGTATTCCGTGGTTTTTATATATAGCGAGAGAGATATAGAAAGAAAAGTGTATTTCTGGGTTTGTCAGCATTGCTGCTGAGATTCTGCACTGTTGTGTGAATTGTGATATTAGTTGGTTCAGTGAGAATAATAATTAGCCATCATATTATGAA | |||||||||
gi|66689267|gb|DR011761.1|DR011761 HEAT1_7_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_7_F02_A029 5', mRNA s ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGTCGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCAAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGGCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGGTAAATTTTAATCTCTATTTTTTATATATATATTTGATGTATTATTAGATTTTTTATTTATTTTAATTGTGGATTTTGAGACTATTTCAAAATTCCAAAGACAGTTTGTCGCCAATAATCTTGTCAAATCATTGATGGCCATACTGTCCATAATATTCTAAAATATTTTAGAAATTTACAATATTCCCACCCTAACCTATGGTTCTGTATGAATAATTAACCCATGGGTGCAGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGGGCGCGAATTACTTCATCTGCGGTGCTCCTGGCCACTGCACTGCCGGAATGAAGATGGCAGTCATCGCAACTTAAGTCCCAATCTGCTGATACACATACTATATATAAAAATAATGCTGCGCTATAATTTGCGTTCCGCCCCACGCCTCTCTATATAAACGCAGTTGTTTATAATGTGACTTTTTGAAAG | |||||||||
gi|6019909|gb|AW064837.1|AW064837 ST36D07 Pine TriplEx shoot tip library Pinus taeda cDNA clone ST36D07, mRNA sequence ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GGTGCAGAGTCTCCATTTTGGATATTGGCTGTGTCAAGATCTGGTCTTGTTATTGCTGTTTCGAGGTGTTTTTGTCTCAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAANAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTANNTTGGGGGTCGCCAGGGGTGGGGTTTCCAAGACTAAGTCATGGACTACNGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCGCACAACCTGGTGGTAGTGNCCCCTG | |||||||||
gi|12482774|gb|BG040189.1|BG040189 NXSI_109_E02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_109_E02 5' sim ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CTGTGTCAAGATCTGGTCTTGTTATTGCTGTTTCGAGGTGTTTTTGTCTCACAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTATTTGGGGGTCGCCAGGGGTGGGGTTTCCAGACTAAGTCATGGACTACTGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCGCACAACCTGGTGGTAGTGAGCCCTNNAGCGTACAGGAGCTGCACCACGGGAGGGGCTCGTCCTCTCACTTCTGGTAGCGNGAAAGTTACTCTGAAGAATGGCGCGAACTACTTCATCTGTNNNGTTACTGGCCACTGCGCTGCTGGAATGAAGATCGCANNCACTGCAACTNAGTNNNACTCTNTAGATACACATACCATANNNNTAATGCTGCGCTGTATT | |||||||||
gi|67687589|gb|DR112779.1|DR112779 RTS1_30_B12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_30_B12_A029 5', mRNA seque ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TCGTGCTTACTGGTTTCCTTGGGTCTGCAGTCTGAGCTTTTCTCGGCTGACTTTAAGGGCGGGCATTGACTCAGAGCATTTGGGCTCTCACTCTCTGGTCATCTACATTTCTATATATAGAGAGAGATCGAGAAACAGATTATTGCAGTCTCCTCTGCTTTTTCCTTTGAGTTAGAGCTTAGAGTTGTGGTTGTGATTGCCGAGTGAGTGAAATGGCTCAGGGAGGAGGTAGTGCAGCCTTACTTTTGGCTGTTGCACTTCTGATTGTTTTTGTGAGCCAGTGTTCTCATGCTGCAGGGGTCTCGTACAAAGTTGGTGGCGCTAATGGATGGGGTTTGCCAAAAACTAATTATCTGGCCAAGGCTCCCCGGTTCCATGCTGGAGACACGTTGAACTTTCATTACAACGCCGGAGCACACGATGTAGTGGCGGTGGGTTCGAAAGACTACAAAAGCTGCAAGGTGACAGGAAATAGCAAACGATATACCTCCGGAGCCGACCAGATTACATTGAAGAAGGGTATGAACTATTTCATCTGCAGCTTTGCTGGCCACTGCGCTTCGGGCATGAAGATTGCGATCCACGCAATTTAAATGATCTGTAAAAGCATATTAGGGTTTTGGATTCCGTTTTAGGTTAGTGATATCGTTTGTGGGTTTGTAATAATAATGAAATGTGTGAGACGTTGATCTGTTAGATGCTTTTTACTAAAATAATAGAAGTGATGGAGTAAGTGACACAGGGTTATTAGATTTATTCCTTGGGAAGAAT | |||||||||
gi|70973593|gb|DR742875.1|DR742875 RTCU1_7_C05.g2_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_7_C05_A029 5', mRNA ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): ACATGGGTTCAGCAATAGTCATAGTTTTGTCCGTTGCAATGGCGATAGCCATGGTTATACCCTCTGAGGCGACGCAGTACACGGTGGGAGGCACTGCCGGATGGGACGCCAGCACTGATTTCAATACTTGGTTAATGAACAAGACATTTGTAGTGGGGGACACTCTCGTTTTCCAATATTCGTCGCTGCAGAGCGTAATGGTGGTGAACAAGTCGGATTATGATTCCTGCCAGACGAGCAACGCCCTGCAATCGTTCACTGACGGCAACACGCAGATCAAGTTATCGAAACCCGGCAGCATGTATTTCATATGCGGAACTCCCGGCCACTGCGTCGGCGGTATGAAGATGGGCGTGAACAACATTCAGGCCGCCACTGCCAGTAGTCCTAGCAGTCCGCCAGGTGCCTCGGCCTCGCCTTCAAAACCCACCCCTACTACTCCCTCCACCACCTCTCCTACCACTCCTGCTAAACAATCGCCAGTTGGGAAGAGCGCTGCCACCTCGATTTCACATAGCCATGGGAACTTTTTTGGAATCGTTATTGCGGTGGTCGGCTTACTATTGTCATCATTCATCTGATTTATTGGAGGTTCAGCCAGGCCAGAGGCAGTGCTTGTAACCAGGCAGGAGACTGTTCGTAATGTGATTTGGTG | |||||||||
gi|5043899|gb|AI725047.1|AI725047 946 PtIFG2 Pinus taeda cDNA clone 8835r, mRNA sequence ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGGATATTGGCTGTGTCAAGATCTGGTCTTGTTATTGCTGTTTCGAGGTGTTTTTGTCTCANAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGNTGGTAGGGAGTCTGCTCCTNCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTAGTTGNGGGTCGNCAGGGGTGGTGTTTNCAGACTAAGTCATGGACTACTGGGAAAAGATTCATGGCCGGNGACACTTTGGTTNTTAATTACAGTCCATCGGCGCACAACCTGGTGGTAGTGAGCCCTGNAGCGTACAGGANCTCACCANGGGAGGNGCTCGTCCTATNACTTCTGGTAGCNACANAGTTACTCTGAAGAATGGCGCGAACTACTTNATCTGTAGTGCT | |||||||||
gi|34356037|gb|CF397620.1|CF397620 RTDS3_4_F12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_4_F ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CTGTTTCGAGGTGTTTTTGTCTCAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTAGTTGGGGGTCGCCAGGGGTGGGGTTTCCAGACTAAGTCATGGACTACTGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCGCACAACCTGGTGGTAGTGAGCCCTGGAGCGTACAGGAGCTGCACCACGGGAGGGGCTCGTCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAAGAAGGGCGCGAACTACTTCATCTGTAGTGTTACTGGCCACTGCGCTGCTGGAATGAAGATCGCAGTCACTGCAACTTAGTCCTACTCTGTAGATACACATACCATATAAATAATGCTGCGCTGTATTCCGCGGTTTTTATATATAGCGAGAGAGATATAGAAAGAAAAGTGTATTTCTGGGTTTGTCAGCATTGCTGCTGAGATTCTGCACTGTTGTGTGAATTGTGATCTTAGTTGGTTCAGTGAGAATAATAATTAGCCATCATATTATGAAAA | |||||||||
gi|49450338|gb|CO369021.1|CO369021 RTK1_44_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_44_A07_A029 5', mRNA se ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AGATCTCAGGTGTCGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCAAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGGCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGGGCGCGAATTACTTCATCTGCGGTGCTCCTGGCCACTGCACTGCCGGAATGAAGATGGCAGTCATCGCAACTTAAGTCCCAATCTGCTGATACACATACTATATATAAAAATAATGCTGCGCTATAATTTGCGTTCCGCCCCACGCCTCTTTATATAAACGCAGTTGTCTATAATGTGACTTTTTGAAAGCTTTTCCGGTGGGTTTTTCCGGTCAAAATCCGGCAGCAATTTATTGGAATGGCAAGTTTGATAGCTAGTTTCTGGAGAATCAAACTGTTTATAAACTATTTATATCTCTATTTAGCAGAATATAAACTGTTTATATCTCTATTTAGCAGAATCGGAGCTCAGTCTCTGTCATGTATTGTGAATTCTGATCGTGTTTGTTTA | |||||||||
gi|30363386|gb|CD024736.1|CD024736 NXRV088_B07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV088_B07 5', mRNA ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TCAAGATCTGGTCTTGTTATTGCTGTTTCGAGGTGTTTTTGTCTCAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTNNNGAGTCTGCTCCTTCT | |||||||||
gi|67686625|gb|DR111815.1|DR111815 RTS1_20_A01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_20_A01_A029 5', mRNA seque ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GAGGTTATTTGTGGCTGTGATTGAGGAGCTTAAAATGGCCAAGGGAGGAGGCAGTGCAGGCTTGGTTTTGGCTTTGGGTCTGCTGATTTTGGTTGCCAGCCAATGCTTTTACGTTGAAGGGGCCGTCTACCATGTTGGTGGCGTTCAGGGATGGGGACCCTTTGACTACGAACAGTGGCTGGTCAAGGTTCCCAAGATGAAGGCCGGAGACCGATTGGTCTTCAACTACAACCCCTCCCAGCACGATGTCACAGTTGTGGGCTACAAGGGCTACAAAAGCTGCAAGGTCACAGGACGTCCAAAACAATTCAGGTCTGGAAAAGATCAGATTTATTTGAAGAAGGGTTGGAACTATTTCATCTGCTCCACTCCGGGTCACTGTTTTCAAGGCATGAGGCTTGCAGTCAAAGCACTGTAGATGATACGAAAGAAGGTTGAGGTTTAGTTTGGATGGATCAAACTGAAGATATTAGGGCAAATCTGAGGTTGGATGGATCAAACTGAAGTCATTATGGCAAGAACTGAATTTCTCTGAGATTTGTAACGCCTTTTTCATAATAATGAGATCCAGAAGTTCGAAGTTTCATATATTAATGTGTGATGCTTTTATGAAAAATGAATGGAAATGTTGGATTCAAGTTAAAAATGGGTTACGAGATTTGGAAATGTTGGATTCAAGTTAAAATGGGTTATGAGATTTCTGGCATAAGGCGATTTATGAATT | |||||||||
gi|70977410|gb|DR746147.1|DR746147 RTCU1_35_B10.b1_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_35_B10_A029 3', mRN ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGGCTGTGTCAAGATCTGGTCTTGTTATTGCTGTTTCGAGGTGTTTTTGTCTCAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTAGTTGGGGGTCGCCAGGGGTGGGGTTTCCAGACTAAGTCATGGACTACTGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCTCACAACCTGGTGGTAGTGAGCCCTGGAGCGTACAGGAGCTGCACCACGGGAGGGGCTCGTCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAAGAAGGGCGCGAACTACTTCATCTGTAGTGTTACTGGCCACTGCGCTGCTGGAATGAAGATCGCAGTCACTGCAACTTAGTCCTACTCTGTAGATACACATACCATATAAATAATGCTGCGCTGTATTCCGTGGTTTTTATATATAGCGAGAGAGATATAGAAAGAAAAGTGTATTTCTGGGTTTGTCAGCATTGCTGCTGAGATTCTGCACTGTTGTGTGAATTGTGATATTAGTTGGTTCAGTGAGAATAATAATTAGCCATCATA | |||||||||
gi|57881869|gb|CX647040.1|CX647040 COLD1_13_D02.b1_A029 Root cold Pinus taeda cDNA clone COLD1_13_D02_A029 3', mRNA sequence ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TACTTCCTCGTGCCGAATTCGGCACGAGGCAAATCCTCATCAATATTATTAATCTATTGGTACCAGAAAGCATATTCAAGCTGGAATGAATAGCTTCGCTGTTCAAAATTGAATACATTCTGTGAATTCAGAGACCAAATTGAATACATTCTGTGAATTCAGAGACCAAATTCTAGGCAATATTGGCAATGGTAATACAAACTTCATCACCCAGCCATTCTGTGAATTCAGAAACAAAGAATCCCAAGAGCATAAAAATTCACCAAACTAATGCCCATTTGAATCTTTTCAGACTGAACAAGACCAGAACTTGGACAAATCTGATCATATCAGATCACTGAATTGGTAATGCTCTTTTCCCAATATGATTACAGTAAAAAATTTCAAGGTAATGGTCTCAATGCCCATGAAAACGATGAAATAGTTTACCCTTTTCCACGTTACATTTAAAAAATTCTAAGTAATGGCCTCAATGCCCATTGACATGATGAGATGGTCACAAAACTGCATTGATCAATCACCGTGAGATTGAATCTTCACTCTGCACAAAGCCAGCTTACCTAATCTTTGTTATTTACTGAGAAAAACTGAAACTTTAAAAATAAGAGAAGTTGCAGAGAAAAAGGCATGTAATAGGAGAAGTGAGCCAGGGAAGAGGCAGTGCATAAGAATGGCAGAAGCAGACGTTTCTGCATATGCAACTCCCATGCCCTAACTCGTCCCTGTCTCGATTGCCTGCCTACCGTTATGCACATATATACATTTAGTATATTCATGTCTGGCCGAGTCGTCCTCTTTCATTCCTTCCATTCTGC | |||||||||
gi|21826943|gb|BQ701627.1|BQ701627 NXSI_111_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_111_G06 5' sim ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CAAGATCTGGTCTTGTTATTGNNNNNNNNNNNTGTTTTTGTCTCAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTAGTTGGGGGTCGCCAGGGGTGGGGTTTCCAGACTAAGTCATGGACTACTGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCGCACAACCTGGTGGTAGTGAGCCCTGGAGCGTACAGGAGCTGCACCACGGGAGGGGCTCGTCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAAGAAGGGCGCGAACTACTTCATCTGTAGTGTTACTGGCCACTGCGCTGCTGGAATGAAGATCGCAGTCACTGCAACTTAGTCCTACTCTGTAGATACACATACCATATAAATAATGCTGCGCTGTATTCCGCGGTTTTTATATATAGCGAGAGAGATATAGAAAGAAAAGTGTATTTCTG | |||||||||
gi|68085947|gb|DR179402.1|DR179402 RTMNUT1_21_H08.g2_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_21_H08_A029 ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TCGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCAAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGGCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGGGCGCGAATTACTTCATCTGCGGTGCTCCTGACCACTGCACTGCCGGAATGAAGATGGCAGTCATCGCAACTTAAGTCCCAATCTGCTGATACACATACTACATATAAAAATAATGCTGCGCTATAATTTGCG | |||||||||
gi|34492867|gb|CF475495.1|CF475495 RTWW2_12_A04.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_12_A04 ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GAGTTGTGGTTGTGATTGTCAAGTGAGTGAAATGGCTCAGGGAGGAGGTAGTGCAGGCTTACTTTTGGCTGTTGCACTTCTGATTGTTTTTGTGAGCCAGTGTTCTCATGCTGCAGGGCTCTCGTACAAAGTTGGTGGCGCTAATGGATGGGGTTTGCCAAAAACTAATTATCTGGCCAAGGCTCCCCGGTTCCATGCTGGAGACACGTTGAGCTTTCATTACACCGCCGGAGCACACGATGTAGTGGCGGTGGGTTCGAAAGACTACAAAAGCTGCCGGGTGACAGGAAATAGTAAACGATATACCTCCGGAGCCGACCAGATTCCATTGAAGAAGGGTATGAACTATTTCATCTGCAGCTTTGCTGGCCACTGCGCTTCGGGCATGAAGATTGCGATCCACGCAAGTTAAATGATCTGTAAAAGCATATTAGGGTTTTGGATTCCGTTTTAGGTTAGTGATATCGTTTGTGGGTTTGTAATAATAATGAAATGTGTGAGACGTTGATCTGTTAGATGCTTTTTACTAAAATAATAGAAGTGATGGAGTAAGTGACACAGGGTTATTAGATTTATTCCTTGGGAAGAATGATCTTACCTATGGTGCCACTTGACCTGTTTATGTAGTTAGCATGGAATTTTTTTTCTATGATTACATTAGAACTAACTCCGGGCTG | |||||||||
gi|21825228|gb|BQ699912.1|BQ699912 NXRV131_C10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV131_C10 5' simil ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TCTAATCTTACTCTGNNGCGTGTCGTCTCTGNNAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCGAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGTCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGGGCGCGAATTACTTCATCTGCGGTGCTCCGGGCCACTGCACTGCCGGAATGAAGATGGCNNTCATNGCANNTTAAGTCCCAATCTGCTGATACACATACTATATATAACAATAATGCTGCGCTATAANNCCCNNTTNNGTNCCCACNCTCTCTATATAAACTGTGCANNTCCTCTATTCNNCCCCAATCGGAC | |||||||||
gi|11605955|gb|BF517844.1|BF517844 NXSI_029_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_029_A04 5' sim ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CTCAGGTGTTGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCAAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGGCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTGAACGCTGGAGCGNNNNNNAGNNG | |||||||||
gi|21822088|gb|BQ696784.1|BQ696784 NXPV_045_B11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_045_B11 5' ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): ATCTCAGGGGAAGAAATTAGAGATCTCAGGTGTCGTCTCTGAGAAAACACAAGAATGGCCCAGGGACGAGGCAGTGCGAGGGTTGTTAACAAGAATGTGGCGGTGGGAGGTATGCTCCTCTTCCTCCTCTGTGTTCTTCAATGTGTGCATCTTGTTGAAGGGGCTACCTACGTCGTTGGGGGTAGCAAGGGCTGGTATTTGCAGAGCAAGTCATGGGCCGTTGGGAAAAGATTCAGGGCCGGTGACATTCTGGTCTTTAATTACAATCCATCAGTGCACAACCTGGTGGTAGTAACGCTGGAGCGTACAGGAGTTGTAGCACGGCAGGGTCTAGTCCTCTCACTTCTGGTAGCGATAAAGTTACTCTGACAAGGGGCGCGAATTACTNCATCTGCGGTGCTCCGGGCCACTGCACTGCCGGAATGAAGATGGCAGTCATCGCAACTTANGNNNCAATCTGCTGATACACATACTATATATAAAAATAATGCTGCGCTATAATCCGCGGTTCNGNNNCACGCCTCTCTATATAAACTGTTTATATCTCTATTNNNNANNNNNNNAGCTCNNT | |||||||||
gi|34346161|gb|CF387744.1|CF387744 RTDR1_19_E04.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone R ATGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TCTGGTCTTGTTATTGCTGTTTCTAGGTGTTTTTGTCTCAGAATGGCCCAGGGAGGAGGCAGTGCGAGAGCAGTTAACAAGAATTTGGTGGTAGGGAGTCTGCTCCTCCTCCTCTGTGTTCTTCATAGTGTGGGTGTTGTTGAAGGGGCTACCTACGTAGTTGGGGGTCGCCAGGGGTGGGGTTTCCAGACTAAGTCATGGACTACTGGGAAAAGATTCAGGGCCGGTGACACTTTGGTTTTTAATTACAGTCCATCGGCGCACAACCTGGTGGTAGTGAGCCCTGGAGCGTACAGGAGCTGCACCACGGGAGGGGCTCGTCCTCTCACTTCTGGTAGCGACAAAGTTACTCTGAAGAAGGGCGCGAACTACTTCATCTGTAGTGTTACTGGCCACTGCGCTGCTGGAATGAAGATCGCAGTCACTGCAACTTAGTCCTACTCTGTAGATACACATACCATATAAATAATGCTGCGCTGTATTCCGCGGTTTTTATATATAGCGAGAGAGATATAGAAAGAAAAGTGTATTTCTGGGTTTGTCAGCATTGCTGCTGAGATTCTGCACTGTTGTGTGAATTGTGATCTTAGTTGGTTCAGTGAGAATAATAATTAGCCATCATATTATGAAA | |||||||||