miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATGCACTGCCTCTTCCCTGGC
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|28607339|gb|CA823790.1|CA823790 R31D07 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 

ATGCACTGCCTCTTCCCTGGC
|||| |||||| |||||.| |
TACGAGACGGACAAGGGGCAG

EST sequence (targeted fragment marked with yellow):
AAGGGGAAGCGTGTTCCAAAACTTTGTTGTAAGCTTTTTTTTCAAGGAGAAGGCTGAGGCTTTGAGAGGTTAATTTTGGTGGCAGTAGCTGACATGGTATGGAAGCACAATGAAAGGTGAAGGTACGTAAACAGGGNATCGTGGGGAGAGGGAGCAGAAAGAGACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACATGTTTTGGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCTTCTTTTTCTCCTCCCTTCTTTTGTTTCCATTTACTTTTTTTTTTTTTCTGTCACTTATTTTAAAACTGTGNNATAA


gi|73935800|gb|DT519110.1|DT519110 WS02440.B21_E18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02440_E1 

ATGCACTGCCTCTTCCCTGGC
||||||||||||||| |||||
TACGTGACGGAGAAGTGACCG

EST sequence (targeted fragment marked with yellow):
GGAAGCTTAACAGTATCCTTGTTCAAGGTTGGTCCAATGTACTTCATTTGTCCCACATCTGGTCATTGTTCCGGCGGCATGAAGCTAGCAATTCCCGTTGTGGCAGCCAGTGGCACCCCAAGTACCCCCACCACACCTCCAGTCGACGATGGTTCAACCACTCCACCAACTACATCTGGCTCGCCACCTACAACCCCATCAACCACCGTCACACCACCACCACCATCGAAGAGTAATAATGGAGCCACCAGCATTTTATATAACATGATGCTTGGTGTCTTTCTTGTATTCGGAACAACTGTTGCATTGATGGGCCAGTGAAGAGGCAGTGCATGCCATATTATCGTTGTTAATTAATGTCCTTGTTATCATTGGGTTGAAGCTGGTTTTTTTCAATTTTTATTGGATGAGGGATGTGAAATTTATGTTTATATATATTATGTTATTGAATAATTAATTTTTAAAAAAAAAAAAAAAAAA


gi|52528464|gb|CV275489.1|CV275489 WS0176.B21_K03 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS0176_K03 3', 

ATGCACTGCCTCTTCCCTGGC
  ||||||||||||| |||||
ACCGTGACGGAGAAGTGACCG

EST sequence (targeted fragment marked with yellow):
CTGTATTCTAGCTAGAGATTGTTAAGGCTTTCAGACATGGCCAATATTGCATCTGCTCTCCTAATTCTTGTGCTTGCCGCTCCAGCAGCTTATGCTGCTACAACGTACACTGTTGGTGACTCGTCCGGCTGGACCACGTTAGGAGATTACACCACTTGGGTTAGTGGTAAAACATTCACTGTTGGTGACTCTCTTCTGTTCAAATATAGCTCCACACACAGTGTGGCTGAAGTATCGAAAGACGACTACGATAGTTGCAGCACAAGTAATCTCGGGAAAACCTATACTGATGGAAGCTCAACAGTACTCTTGTCCACGGCTGGTCCAATGTACTTCATTTGTTCCACACCTGGTCACTGTTCCGGCGGCATGAAGCTAGCAATCACCGTTGCCGCAGCCAGTGGCACCCCAAGTACCCCCACCACACCTGCCCCTCCAGTCGACGATGGTTCAACCACTCCATCAACTACATCTGGCTCGTCACCTACAGCCCCCACCGGCACACCACCACCACCGTCGAAGAGTGATAATGGAGCCACCAGCATTTTATATAACATGATGCTTGGTGTCTTTCTTGTATTCGGAACAACTGTTGCATTGATGGGCCAGTGAAGAGGCAGTGCCATATTATCGTGTTGTTAATTAATGTCCTTGTTATCATTGGGTTGAAGCTGGTTTTTTTCAATTTTTATTGGATGAGGGATGTGAAATTTATGTTTATATATATTATGTTATTGAATAATTAATTTTTATTTATAAGATGCAAAAAAAAAAAAAAAAAA