mature miRNA: ATGTGCTAAAAAGTCAACGGT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|117222003|gb|CT852967.1|CT852967 CT852967 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): CTTTTTCCTTTTTTCCGTCGATTCACCATTGTTGCTTGGGGTGCAAGCGCCCAGCAGAGGCCAGTTTTACGCACCAAATGGCTTGCATATCACATATCTCCTGAAGAAGACCAAACGAGAAGCCATCTTCACTGCCCAGTCCGTGCCCGGCACCATCAGCATAGCTCTTCTTTCTTCTATGGTGTGTTCCTTGATGATGCAACTCACCACCACATGGCCATGGCGTTTCTTTTTCTGCTTGTTTTTCCACCTGCTGTTCCTCTTCCCAACCAACTCCTTGAATCAAAGCTACTGTGACCCTGGTGATGCTAGTGCACTGCTGGGCTTCATGCAAGGTCTCAGCGGAAGCGGCAGCGGCTGGACGGTCCCAAATGCCACTTCTGAAACAGCCAATTGCTGTGCTTGGCTTGGAGTCAAGTGCAACGATGGTGGCCGGGTCATCGGGCTGGACCTCCAAGGCATGAAGCTAAGGGGCGAGCTGGCAGTCTCGCTCGGGCAGCTGGACCAGCTCCAGTGGCTCAACCTGTCCAGCAACAACCTCCATGGTGCCGTCCCGGCAACCCTGGTCCAGCTCCAGAGGCTACAACGTCTTGATCTTAGCGACAATGAGTTCTCTGGTGAATTCCCGACCAACGTGTCTCTCCCAGTGATTGAGGTCTTCAATATATCCCTCAACTCATTCAAAGAACAGCATCCCACGCTCCATGGTTCAACGCTCCTTGCCATGTTTGATGCGGGTACAACATGTTCACAGGGCACATTGATACCAGCATCTGCGATCCAATGGAGTGATCCGTGTTCTCCGTTCACGTCGATCTCTATCTGGGGAGTCCAGCAGGGGTTGGGACTGCACAAGCTCGAGAGCTTATGTTGATCTAATAGCATACTGGGAGCTTGCAGATGACTTTTCAGGCTGTCTCGCTGAGGAACTGTCTTGCAGGAGATAGCTTTTGGTAGAAGACCCAAGGTTTGGAAAAATTTTACCCTTTTAACCGGCAATTTTTAATTATTCCTGTACCTCCAAGGTTTTTGGAGGCCTGCACCTTGGATTTTTTTGCACATACTTTTATGGGGGCCCGGCCTTTTCTTGCCCTTCCACACCCGAAATGTTTCCCGGAAAAAAATATTTTGGACAACAAAACCAATTGTGGGGGGGGACAAATGGCCCCTTTTACTTTGCCAAAAATATTTATGAAAAAAAAATTTTGTTTTTGTGTTGTTTTTGTGAGGGGTGATTTTTTCCCCACCCCCCCCCCGCGGAGGCCAAACCGGTTGGGGGGAAG | |||||||||
gi|117223381|gb|CT846260.1|CT846260 CT846260 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): AACATCAATTGACCACCGCCTTTCCACATCCCCTTTTTCTGACGCTGCGTTTCCCCTTCCTGCAACCATCGATGGACTTCCTGAACTGTGTCTAGAATCTGATTCGACCGCATGGCAAGCCATCCACACACTGACGTTGTGACATGAGGAACCGATAGGAGATGGCCATGCTACGCTTCGCTTGGTGGTTTAGTTTCATCTGGTTGATTGGATGGGTTCATTTGACTCTAGATGAGACAATCAGGTATTTGTGTTTTAGTAAGCAATTGATGCAAATATCAAAATGATCTACTTCGCATCCACTTAGTCTTGCTTATGTTCCTTTTCTTACATGTTAATATTATGTGCATGAAATGCACCTTTTGTTGTTTCTGAATTTCCTGGCCTCCATGTGCACCTTCAATCGAATTTTATTCAGTTGCTATATATATGCAGGTCACTTCGCAATCCTGCAAATACTTAACGATTGGTTGGAGAAAGGCTGTTCAGGATGGAGCTGAAATACATGAGAAGAACTAAGAGATAAAACAGAAAATGTAGATGCGGGAACAAGAACAGCGTGCCCAGGATGGCTATACACAAGTCGACTTCAAGAAAATGTGAAGGGCTAAGAATGAGTATTTTTCTTATCCATTTAGTCCGTTGAATATGTTTGTGGTAGGTCCTCTCCATACTAATAAAGACAAACAACCTTATCTGATACGTACTCCCTCCGTTTCAAAATGTTTAATACCGTTGACTTTTAGTATATGTTTGACCATTCATCTTATTTAAAAAATTTAGTAATTATTTATTTTTCCATATCATTTGATCATTGTTAAATATACTTTTATATACACATATAATTTTACATATTTCATAAGTTTTTTTTAATAAGACAAATGGCCAAACATATTCTAAAAAGTTAATGGGGTCAAACATTTTAAAAC | |||||||||
gi|117222103|gb|CT845684.1|CT845684 CT845684 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): TTCCCCCCTGCGGTCCCTTATCTATCCCCACTCGAGTCGAGATTTCGCTGGCGTTGCTGGTGATGGAGGAGCGAAAGGTGGAGGAGGAGGATTGGGACCAAGACGACGATGGTTCGGTCTCTTCCATCGATGTAGGTGCCCAGCTGGGGAATGGTATTGATCTTGGTACTGTTTGAGACGCCCACTGGATTTGCACTTTTTGGCTATGATGGAATCAAACTCCTCCGCCCAAATGCCCTCAAGGATGTATGGGGAGAATTTGTCATGGAATTTATGCTTCAATACCAACCTGTTTGGCTGAAAGATTTTCAAGCTTTCGAAGACAAGGCCAGCGCCCTTAACTTTGATACTGGTGTTAGCGAGCAGCTTGCAGGCATGATCCGGAAGTGTATCTGCCCTGGGCAGACACTAGCAGTTGGAAAGCCAGAATATGTAACTATCATTGAAAGTGACTTGGGAATAAAGTGCCTATGGAATGCTGAAGTGATGGAGTTGATGTGGGGCCTGAATAATCTAAAGGAACATTTAGTACCTGATGGAAAATCAGAGCTGAGTAAAGAGGATTGCCTCCCTATGTGTGAAGGGATGAAATTTACCCTGAATAAGTATGGCTTCGGTGATCTCAAACCAGAGATGGTTACTAGAAGTATCATTGAAGCGACGGGCCTCTTGTACGAGACTGACTATAATGTGAGGAAACATGGTGAGAGCATGCGCTATGCTTGTAAGCACTTGAAGGAGACATCTGGCATCAACGCTGAGGATTGGGACCTGCTGAAACTTGCAACTGCTATCATGATGTTATGTTACCCTAATGGTGAACACAAGTTGGTTGGGAACCTTCCCGAGCTTTTTGGAGATGACTATTTAAAGTTGGTGGATGATGCGCCTAAATATAAAGGTATATTCCGGAAGTTCTCTTGCTTGAGGGCTTATGCAGAAATGGTGCGGTCCCGTAGAATTAGGTCTAAGGCGGCTCGTAGTTTGGACTCTTTAGTCACGGCAGCTGAACGCATATACGACGAGGCTCAACAAGCGCTGATGCATGCGCAGCCAGGAGTGATCAAACAAGAGTAATACTGTTCTTACTATGCTCCCAAAGCGTCCAGCTGGGCTGCACCTGCATGCCCTGGTGTTTGATGCAGACATTAAGAGTGTTTGGTTGGTATGTTTACTATGTCACCCAACTAGTGATTTGATCACTGTACTCTTGTGTATTCTCAATTACTGGCATTTCAGACTGAGATGAATCATCAGACTATCTTGCATTGCTCTGTCCCTGTGGTTTACCTTTCTTCCTTTGTACTACCTCTGTGCCTAAATTCGATACTGTTGACTTTTTAGCACATGTTTAACTGTAGATCTTATTCAAAAACTTTTGTTAAATATGTAAAACTATGTGTATACATAAAAATATACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCTTGGCCCCGGGGGGGGGCCCGGCCCCCAATTCCCCCCAAAGGGGGGCTATAATACCCCCCCCCCCGGGGCCCGTTTTTAAAACCCCGGGGGGGGGAAAACCCGGGGGTTCCCCCATTTAAACCCCTTGGAAAAACCCCCCCTTTTCCCCGGGGGGGAAAAAAAAAAAAGGCCCCCCCCGATCCCCCCTCCCAAAATTTGCCCCCCCGAAAGGGGAAAGGGGAACCCCCCTTAAATCCCCAAAAAACCCGGGGGGGGGGGGGGGTTTTCCCCAAGGGACCCCATAACTTTGGCCGCCCCCTTTCCCCCCCCCCTTTTCTTTTTTCCCCCTCTTTTTCCCCCCCGTTCCCCGGTTTTCCCCCGGAAATTCCAAAAAGGGGGGGCCCCTTTTGGGGCCCAAATAAAGGGCTTTCCGGGCCCCCCCCCCCCAAAAAAAATTTTTTGGGGGGGGGGGTTCCCAAGGGGGGCCCCCCCCCTAAAAAAAGGTTTTCCCCCCC | |||||||||
gi|117242754|gb|CT843553.1|CT843553 CT843553 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): GCGAACGCACGTTAACCCAGAGAGTGCACGTCACGCGCGCGCATCCGTGCATGGCCTCCGCGGCAGCGACGGCGACGACGAGGACGAGCCTCCGGCGCGCGGAGCTGTGCGCGGCGGCCGCGTCGGCCGCGGACGCGGCGTCGTGGTGCTTCGCGGTGGCGCTCGTCGCGCTCGTGCTGCTGTGCGCGCTCCGCGCGGAGGCCGTGGAGGTCCACGGCCCGCGGCTGGGGGGCGCGGCGGCGCGGCCGTGCGAGGAGGTGTACGTCGTCGGAGAAGGCGAGACGCTGCACACCATCAGCGACAAGTGCGGGGACCCCTTCATCGTGGAGAGTAGGCCGCACATACACGACCGAGACGACGTCTTCCCGGGCCTCGTCATCGCGCTCCGCCCTACCAAGAACAGCATTTAGCTTCGTGCATGGAAGTGCACGGGGTGAGCAAGAACTCCGAGTTTTCCGTCTTTTCATTTCTTCTCCTTTTTTTTTCTGTCTTTCTTTCTTGAATTCTTGAGAGGACAAGAAAGTGTAAGTTGTCCACCTGTATATAATACTTCCTCCGTTTCGAAATGTTTGACGCCGTTGACTTTTTAGCACATATTTGACCATTTGTCTTATTCAAAAAATTTAAGTAATTATTAATTCTTTTCTTATCATTTAATTCATTGTTAAATATATTTTTATGTAGGCATATAATTTTACATATTTCACAAAAGTTTTTGAATAAGACGAATGGTCAAACATGTGCTAAAAAGTCAACGGTGTTAAATATTTCGAAACGGAGGGAGTAGAACACAAGAAAAGTATAGTTGAATAAGCCGGCTCTTGCTTCGCCTTTCAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|89171780|gb|CI720839.1|CI720839 CI720839 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): GATAGGATTAGAGGAGCCAAGATCGAACCGTCTTCAGTAGAGTAGCAGCAGAAGCAGCTCCTTCAGGCCAAATGATGAATTGGTAGAGGGTCATCCATACCATCTCCAAGATGCCATTGTTGATTGGACATTGAGGTCCTGGTTTTGCTTATCCGTTTCGTTCATCATCATCCTGATTCCTTCATGCCCCTCCAAAACCACGGGGTTGCCTCTGCAGATCACGGGTGCCCGGATCTTGAAGCACATGGACAGGCATGGAGCATGGGGTCCCTGTTACAGCTACAGAGAAACCCAGCTACACTGTAGCAACATCAACTGTAATAGTAACTACTCCCTCCGTTTAAAAATATTTGACACCGTTGACTTTTTAGCACATGTTTGACCGTTTGTCTTATTAA | |||||||||
gi|88567758|gb|CI498475.1|CI498475 CI498475 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): ACCTAATCTTTTATACTACCTCCGTTTCAAAATGTTTGAAACCGTTGATTTTTTAGTACATGTTTGACCATTCATCTTATTCAAAAAATTTAAGTAATTATTTATTCTTTTCATATCATTTGATTCATCGTTAAATATACTTTTATGTACACATATAGTTTCACATATTTCACAATTTTTTTTTAATAAGAAAAACGGTCAAACATGTGCTAAAAAGTCAACGGGGTCAAATATTTTTAAACGGAGGGAGTACTTACTATTACAGTTGAAGTTGGCTAAGGGGT | |||||||||
gi|29687576|gb|CB683851.1|CB683851 OSJNEf12M22.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf12M22 5', mRNA sequence ATGTGCTAAAAAGTCAACGGT EST sequence (targeted fragment marked with yellow): CAAACTCCCACTAGCAGAGTAGCAGTCCATCAGCACATAAACCCTTCCATTCCAACCCCAATTAGCACTAGATCGTCATCGCTATCGGCTGCAGCAAAGAATGGCAGGAGCTGGGAGGACTAGGAGCACGGCCATGGCGGCGTGGTCGTACTCGTCGCTGCTGCTGCAGCTGCTGCTTCTCTCGATGGTCGCCGTACTAGACGGCGCGGCGACGACCGGCGGCGGCGGTGCCGGGGCGCCGGCGCCGGCGGCGGACTGCACGGACGCGCTGCTGAGCCTGGCGGGTTGCCTGAGCTACGTGCAGGAGGGGAGCACGGTGGCGAAGCCCGACGCGCCGTGCTGCTCGGGGCTCAAGGGCGTGGTGAAGAAGGAGGTGGCCTGCCTCTGCCAGGCGTTCCAGGGCAGCCAGAACTTCGGCGTCACGCTCAACATGACCAAGGCGCTCCAGCTGCCCGCCGCGTGCAAGGTCAAGACGCCGCCGTTCAGCAAGTGCCACCTTTCTATTCCGGGCGTGACTGGTGGTGCTCCTGGTAAGTTATTGATTGCTCAATTACAAAGTCATTATTTTTTTTCCTGATTACATAAAAGATACTCCCTCCGTTTCAAAATATTTGACACCGTTGACTTTTAGCACATGTTTGACCATTCGTCTTATTCAAAAACTTTTGTGAAATATGTAAAATTATATGCCTACATAAAAATATATTTAACAATGAATTAAATGATAGGAAAATAATTAATAATTACTTAAATTTTTTAAATAAGACGAACGGTCAAACCTATGCTAAAAAGTCAACGACGTCAAACATTTCGAAAATGGAGGGAGTACATGCACACACATC | |||||||||
gi|88904810|gb|CI712109.1|CI712109 CI712109 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group ATGTGCTAAAAAGTCAACGGT |