| mature miRNA: ATGTGGGGAAGCACTGTAAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73882798|gb|DT485536.1|DT485536 WS02528.B21_H21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_H21 3', mRNA sequence ATGTGGGGAAGCACTGTAAC EST sequence (targeted fragment marked with yellow): CAAATTCAGTAAAACCATCTCTCTCTCTTAAAACCCCTCGATTTCCACGCCAAGTGAAAGCCAGAACTACTCCCATGGAAGCCGAACAAAGTGGAACTGCAGTCAACCCCAGCTCAAATGCATCCATGAAGCTCTTGTTTGTGGAGATGGGTGTTGGCTATGATCAACATGGGCAAGATATTACTGCTGCGGCAATGCGTGCATGCAGGGATGCCATCTCTTCAAATTCAATTCCTGCATTTCGTAGAGGGTCCATACCTGGGGTCACATTTGGCCAAATGAAACTACAGATCAAACTGGGGGTCCCACATTCTCTGCAACAATCATTGGATATCGAGAGGGTGAAGTCTGTCTTCCCTTATGGGGAAATTGTGAAATTTGAAGTTGTTGATGGTGGAATGATATGCTCAAGTGGTGTGTTAGTTGAAGAAATGGGAGACAAGAATGATGACTGTTACATTGTGAATGCTGCAGTATATGTTGGCTACTAGCTTTTGTTACCTCTTTAAGTGCTTTCTAAGGTCAATGTTGTAAATGATGAAGGACCCTTGAGGGAGATGGTGGCTGATGGTGCTTCTCCACATGTTTGTGGCAAACTGCTGTGTCATATTTTTGGCAGAAATGAGAGAAGTTTCACGGTTTGCATCAGGTGCTGTCTCAGCTCTTGCTTCTTTATGGGTGAATGACCTTTTTGATCTACCCATTGCTTTAAATTTGTTGCCAAAAAAATAAAAAAAACCAATAACCAAAAATGTATTGCCTTAAAAACTAGTTGTGGTACAATAACTGTCACTGCAACCATGTTTGATGCCATCATATATTCAGCCTTTTGTATTTGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73875345|gb|DT478083.1|DT478083 WS02521.BR_M21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_M21 5', mRNA sequence ATGTGGGGAAGCACTGTAAC EST sequence (targeted fragment marked with yellow): GGAACCGACATGACTGCATCTGTCCTGAAGTTTCCTCTTCTATTTGCCTTCACTGAGTTTAGGCCTCTTGATCGCCACATTCCAAAGAATCACCTATCAAATTCAGTAAAACCATCTCTCTCTCTTAAAACCCCTCGATTTCCACGCCAAGTGAAAGCCAGAACTACTCCCATGGAAGCCGAACAAAGTGGAACTGCAGTCAACCCCAGCTCAAATGCATCCATGAAGCTCTTGTTTGTGGAGATGGGTGTTGGCTATGATCAACATGGGCAAGATATTACTGCTGCGGCAATGCGTGCATGCAGGGATGCCATCTCTTCAAATTCAATTCCTGCATTTCGTAGAGGGTCCATACCTGGGGTCACATTTGGCCAAATGAAACTACAGATCAAACTGGGGGTCCCACATTCTCTGCAACAATCATTGGATATCGAGAGGGTGAAGTCTGTCTTCCCTTATGGGGAAATTGTGAAATTTGAAGTTGTTGATGGTGGAATGATATGCTCAAGTGGTGTGTTAGTTGAAGAAATGGGAGACAAGAATGATGACTGTTACATTGTGAATGCTGCAGTATATGTTGGCTACTAGCTTTTGTTACCTCTTTAAGTGCTTTCTAAGGTCAATGTTGTAAATGATGAAGGACCCTTGAGGGAGATGGTGGCTGATGGTGCTTCTCCACATGTTTGTGGCAAACTGCTGT | |||||||||