| mature miRNA: ATTAACCAAACCGAACCGAAC species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161570529|gb|EY941680.1|EY941680 RS2EL02TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): GAGAATTGGTTAGTTCGGTTTCGAAATTTTCTACCAAAGTTTTTGATTTTCAGTTGAGTTCCGGTTTAAACTGAATAAATTCAAAAAAAAAAAATCGGTTAAATTCGGTTTGAAATTTTGGTTAAACTTAGCATTGTTTGGTAAAATCTATTTTTAGAAAACTAAACTGACCAATTACCAAACAGAATTTGTTTTTTTTTGCCGAATTGAACCGAACTTTCTAACCGAACTGAACCAAATACCAAACTTTTCGGTTCAGTTCGGTGGGTTTGGTTAATAACCGCAGGCCTAATCCCACATGTATCATCCCAAATGTACCTTCAAGCAGAAGTCATCGAGATCCCTTGGAGCACCATACATCAGAATCTGATCATGAACTTTGCCAGGCTTCGAATAAGGAATGTACTTATGGTAATCCCACATCCTATTCGGCACTTCTTCCACAAACCCTTCTGCACCCTTCTTAAACAGAGGAATCTCCCACCCTTCTCTAGGCATTGTAGCTCTTATAGTATCCGCAACCGGCATTCCAACCGAATCAACCTCAGGATTGAACCCAAACTTATAAAACGTGTCTTTAAAGAATCTTCAGGGTACTGAATCTCGTAAGGCCCGTCACTGAAGTTCCCTTTCCCATTTGCAAACCCGTCCCACATAGAACCTTGGACATAGACTCTAGCACCGTCGAGATAGACACT | |||||||||
gi|167431939|gb|FD940842.1|FD940842 RS1GU07TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): TTTTTCTCTCACGCGAAAAAGCTCTGATATTTTACAAATCGCCGACGATTCGATCTCGAGAGTCTCTAGGTTTGTTTCCGTAATTCGATTCGAGATTCTAGGGTTTGCTGTTGTTTCAATCTTCTTCTGCTTCGTGAAGCGTTTGGTTTGGTTTGGTTTAGTTTGGTTTGGTTGGTTCACGGATCTTTGGGGGCGATTTTTCGTTCTAGGGTTTCTGTAAAATTCCCCCCTTTTCCCGGAATAATTGCTTCCCTTTTGATTGGTACTTCGTGGGGAGCTCGCAAGTCGCATCTGAGGTTGATTGAGGTTTGAAAGTTCCTGTCTTGGTTTGATTTGAAGTTGATTTCCGTGGAGGAGAGGGCTTGTGACAACGATTCAGCTATCTGGAGCTTCTAATGGTCTCTTGCAAATTGTGATTTTTAGAAGCGAGGAAGGGTTTTATATTTGTTGAAGTTCTTTCTTGCCAAAAGGAAATGGTTGAGAGTGCTGCTTTCCCTGGAGGGTATTATCGGAATACTTTCGAGGCGCCTGATGAATCAGAGGGCTCTGGAAGCTCTGCGCAGATTGATACTGAGGTCACTGCATCTGAGAACTCGAGCACTCCTGCACGAAACTGTGTTAAGTTGAGTTCTGATGATGAAGATCCTTACGTGTCCAGAGACGAGTCATTCTTTGTATAGCATGTCACAATCCGAGAGGAAAGATTTGATTCATCGGCTCAA | |||||||||
gi|156168978|gb|EW729124.1|EW729124 RS2AN65JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): GAAGAGGCTCTTTGGACCACAGGGAGGACCACACGTCTGCCAATGATATAGTTGAAGTAGTAGAAGAAGACGATAATGCCATTATTGAGTTTCGAGGGTTAGACCACGCAGACTCACTGGGTCTGGTACTGATCGGTAGAAGGCTAAAGTCTCTGACTTTATGGCTGGTTCGAGCCTTGACGTGTCTAAAACACCCAGGCTCTCACCACCCAGAGATGCATCTTGTCAAAATCTGTGGGCCTAAGACCAGACCGAAACGTGGACCGTCGGTTTGTTTTAACGTTTTTGATTGGCAAGGCGAAAAGGTTGATCCTGTGGTAGTGGAGAGGCTTGCGGAGAGGGAGAAGATCGGTTTGAGATGTGCTTATTTGCAAAAGATTAGTAAGATCGGGAAGGACAAGAAGAGAAATGATGAGAAACAGAACCTGAGTTTGAGAGTCTCTGTTGTGTGTGTTAGGTTAGGGTTTATGACAAATTTTGATGATGTTTTTAGGGTTTGGGGGTTTGTTTCTAGGTTCTTGGATGCTGATTTTTTTGAGAAGGAGAAGTGGAGGAAGAAAGCTCTTGAGAAAAATAAAGGATGTGATTAGTAAAACAGTTTGAAAATCTGAATCTTAATGGTTCAGTTCCACGAGTTTCAGGTTTGGTTCGGTTAGGTTAAATTGTGGTTCGATTAGGTATTCAATTTTTTTGGTCGGTGCTGTTTGGTATATAGGCAACTTGGTTTCGGTTTGCTTTGAG | |||||||||
gi|167452659|gb|FD958403.1|FD958403 RS3H706TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): GGGGTCAAGGCAAAGCGAAAGCAAAAGGGGACAAAACGTAAAGTGCAGAGCCTTCCTTCTTCTTCTTCTTCGTCAAGAAGCTGCTGCTGCAGCCTCTTCAGGACTCTATCGTCGCCTAGTCGATAAAAAGGAATCAACTTTGACATCATTCATCAGGTTATTTGAAAAGGATCATTGATTCTCCTCCCGCCCTGAAAGTCTCGACCTTTCCAGATCTTTCGGAGCTCCGTTTACTTCAAATCGATGGGTGGTTGCCTGGCTTGCTACAGAGAACCTAGAACAACTGAAACTCTAAAGGATCCACCTTTAAATCCCACAGCTAAAACGTTTAAGAAACCAAACGCCTCTGAAGATTTTTGGTCAACCAGCACTGTCGATATGGACAACACCACCTTCCCTTCTCAGGGGAGCATCTCGTCATCTAACCAGGCTTTTGAGTCTCAGTCTGGTGCTAGAAACTCTAATCCCCCTCCTCCTCCTGAATTTGTAAACCAAGGTCTTCTTCTTTGGAATCAGACCCGGGAGCGTTGGGTGGGCAAGGAAAGACGTAATCATCATAACCCACCGGATCACAGTCAAGGAGCTAAGATTAATTGGAACGCAGCATCGTATGATAGCTTGCTGGGGAGCAACAAGTTATTTCCCCAACCCATTCCTCTCATGAAATGGTGGATTTTCTAGTGGAGGTTGGGAACAAGAACGTCTATATGACTGATGAACAAGCCTGGGAGACGCACTCTCGTATACACACATACACAATGGTTCGAGTCATTTCAGATTTTTTTTCTGTTTGGTTTGGTTGATTTCTGAACCCTT | |||||||||
gi|166151951|gb|FD584186.1|FD584186 RS3FN93JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): GCCATCGACAAAGGGCTCGGGGCTGAAGGCAATGCTGAGCTCGCAGCCGAACGGTATGAGGAATGCCTCAAACAAAAGGTTAATGAGAACATAATCCGAACATACAAGTCCTCAGGTTTCCCACAGTTCGATTTCCAGCTTCTAGGAATGGGACCAGACGGTCATGGCGTCTTTGTTCCCGGGACATGATCAGATCAATGAGAAAGTGAAATGGGTTACATTTATTACCGATTCACCTAAACCCCCACCAAAAAGGATCACTTTTACTCTACCGGTTATCAATTGTGCTTCATACAACGTTATGGCCGTATGTGATAAAGAACAAGCTGATTCGGTTGAGGCTGCTTTTACTCATACCAAAGATGTACCAGCTGGTAGGCTAACCGCGGATGTTGAAGTGGTTTGGTTCCTTGACCAAGCAGCTGCATTTAAACTCAAAGGCTGGTGCTCTATCCTTTGATCATTGTATCGGTTTGGTTTGGTTCATTTGTAACCCGTGTATTGCTATTACTGCTGTGCACCATACCAAATGACTAATCTGGTTTTCAAGTTTCCTCTTCCTTTTTAATAATAACTAGATTTTGATCCGTTAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|161576898|gb|EY948348.1|EY948348 RS3DP12TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): TTTTTTCTCTCACGCGAAAAAGCTCTGATATTTTACAAATCGCCGACGATTCGATCTCGAGAGTCTCTAGGTTTGTTTCCGTAATTCGATTCGAGATTCTAGGGTTTGTTGTTGTTTCAATCTTCTTCTGCTTCGTGAAGCGTTTGGTTTGGTTTGGTTTGGTTGGTTCACGGATCTTTGGGGGCGATTTTTCGTTCTAGGGTTTCTGTAAAATTCCCCCCTTTTCCCGGAATAATTGCTTCCCTTTTGATTGGAACTTCGTGGGGAGCTCGCAAGTCGCATCTGAGGTTGATTGAGGTTTGAAAGTTCCTGTCTTGGTTTGATTTGAAGTTGATTTCCGTGGAGGAGGGCTCGGGAAGATTCAGCTATTTGGAGCTGCTAATGGTCTCTTGCAAATTGTGATTTTTA | |||||||||
gi|167446826|gb|FD951475.1|FD951475 RS3G865JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): CCACACTGAGCTCAGGCTGCATGTGCCTCCCTCCATTGCTCTTGCTACCAGAGGGCGTCTTCAAGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAGTTTGATGACTTAGATTATGAAACTCTAAGAGCACTTGATTCTGATAATCCCCCACAAACTCTATGAGCGAGGAAGAGATAAATGCACTTCCAGTACACAAGTACAAGGTCTTGGACCCTGAAAATGGTTCCTCTTTGACAAAGCAGGCATCAACCTCATCCTCAGCGGAGAAGAAGCAAGATTCTGTCAGTGCGAGTAAAAAAGGAACGGAAGACGAGCTCACTTGTAGTGTTTGCCTCGAACAAGTTACTGTTGGGGAGGTTGTTCGCACCCTACCTTGCTTGCATCAGTTTCATGCAGTCTGTATCGATCCATGGCTTAGACAGCAAGGAACATGTCCTGTCTGTAAATTCAAGGCGCACTCAGGATGGCAAGAACAAGACGACGGGACAGATGATGATGATGATGATGATGACGAAGCCTCCGTCATGGTTTGAGAGTTCGGTTTTCGGACACTTGTTATTAGGGGTGGGCACTTCGGTTATTTTATCGGTTCGGTTCCGGTTCGGTTCGGTTTGGTTAATTCGGTTCAATGATTTATCCAACCAAAGTAAACCATAGTTAGTTCGGTTTGGATCGGTTTCGGTTCGGTTTGAACTCAGTTCGGTTTGAAAAAAAAAAAAAAAA | |||||||||
gi|166141881|gb|FD573377.1|FD573377 RS2EY88JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): TTCCCTCTGGGCCAATGACGAGAGAGTGCGCAAAGCACTCCATGTAGTAAAGGGAAGTATAGAAGAATGGGTACGGTGTTTTTCGGGCAAGCCTTACGATTCCGATATCAAAAGCAGCGTACCATATCATTGAACAATAGCATCAAAGGATACAGATCTTTCATTTACAGCGGTGATCACGACTGGATGGTGCCTTTCACTTCAACGAAAGAGTGGATAAGATCACTTGGTTATTCCATTACTGAAAAGTGGAGACCATGGATGATAAACAATCAAGTTGTTGGATACACTCAGACTTATGCCAATAACATGACATATGCTACTGTCAAAGGAGGTGGGCATACAGCATTTTTCAAACCAAAGGAAAGTTTTATCATGTTTCAGAGGTGGATTAGTGGTCAACCTCTCTAAAATTTCCCTTTTAAAAAAATCTGTAAACCGTTGTTGAATATCTCTTTACTGTAAAACAAAAATTTCGGTTTGGTTTGGTTGACAAACCGAAAAACCTAATAATAAAGACTCCGGCGAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|167439834|gb|FD944858.1|FD944858 RS2H734JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): GCGTTGGAACTGCTTGTGACTTCTAAGAAATGTAGGAAACAAGTCGTTGCTGCTGGTGCTTGCTTGCATTTACAAAAGCTTGTGGAGATGGATGTTGAAGGAGCTAAGAAATTGGCAGAGAATCTTGCTCGGAGTAAGATTTGGGGCGTCTTTGCAAGGCCATAAGAGACTGTGGATACGTTTATTAACTTGTATGTAAGGAACACTGATGAATCTTGTGGTGTCGATTTTCTCTATATGTTGTTTGATGATTGATTGTTCATTTAGGTTTGGTTGATTGTGTGGCGGGGAGAGTTTAATTGCTGATTATTTCTGAAGACAAGTAATAATATCTTTGTAGAGTTTGTAATCCTCTTTTACCGATTGGTGAGCAAATCATATCAGAGTTTGATCCAAAAAAAAAAAAAAAAA | |||||||||
gi|167431939|gb|FD940842.1|FD940842 RS1GU07TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): TTTTTCTCTCACGCGAAAAAGCTCTGATATTTTACAAATCGCCGACGATTCGATCTCGAGAGTCTCTAGGTTTGTTTCCGTAATTCGATTCGAGATTCTAGGGTTTGCTGTTGTTTCAATCTTCTTCTGCTTCGTGAAGCGTTTGGTTTGGTTTGGTTTAGTTTGGTTTGGTTGGTTCACGGATCTTTGGGGGCGATTTTTCGTTCTAGGGTTTCTGTAAAATTCCCCCCTTTTCCCGGAATAATTGCTTCCCTTTTGATTGGTACTTCGTGGGGAGCTCGCAAGTCGCATCTGAGGTTGATTGAGGTTTGAAAGTTCCTGTCTTGGTTTGATTTGAAGTTGATTTCCGTGGAGGAGAGGGCTTGTGACAACGATTCAGCTATCTGGAGCTTCTAATGGTCTCTTGCAAATTGTGATTTTTAGAAGCGAGGAAGGGTTTTATATTTGTTGAAGTTCTTTCTTGCCAAAAGGAAATGGTTGAGAGTGCTGCTTTCCCTGGAGGGTATTATCGGAATACTTTCGAGGCGCCTGATGAATCAGAGGGCTCTGGAAGCTCTGCGCAGATTGATACTGAGGTCACTGCATCTGAGAACTCGAGCACTCCTGCACGAAACTGTGTTAAGTTGAGTTCTGATGATGAAGATCCTTACGTGTCCAGAGACGAGTCATTCTTTGTATAGCATGTCACAATCCGAGAGGAAAGATTTGATTCATCGGCTCAA | |||||||||
gi|158928062|gb|EX900868.1|EX900868 RS2CP76JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence ATTAACCAAACCGAACCGAAC EST sequence (targeted fragment marked with yellow): GCTCTTCTCTCTCACAGTCACGACACTGCATTTCTTTTTCTTTTCAATTGCTCGTCGGAAATCGAAAGCCCTGATTTCAGAGACTTGAAGATAACCAGGAGATGAAGAAGATGAAGAACAGCCGGAGATGGAGAGAAGAGGCGGAGGCAGAGGAATAAGCAACGATGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAGCAGACAGAGACGCAAATAGGAGGAGGATGGAGTAGGAAGATGACGAGCAGATCGAACGGTGGTGGTCGTGGCTGGTGGTCTAGGCGTCGTGGCGGCGGAGATCGAAGAAGAACGTGATTTAGTTAGGCTTAGTTAGGTTAGGTTTGGTTAGGGTTAGTTAATAAACCAGATTTGTATGTAAACCGGTTTTTGTAATAAACCCATACATTTGTAAACCAAAATTTTTAATAATAAATATTTCTTTTCACAAAAAAAAAAAAAAAAAAAA | |||||||||