miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATTGAGTGCAGCGTTGATGA
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52534049|gb|CV281074.1|CV281074 WS0138.B21_O16 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS0138_O16 3 

ATTGAGTGCAGCGTTGATGA
|||||.|||||||.|| |||
TAACTTACGTCGCGACCACT

EST sequence (targeted fragment marked with yellow):
ACCAACCCTTTATGGGGCATGGCATCATTTCACCAGCGCTGCATTCAATCATGTTTTTCTAACTCTTCCGGGCATTGCGTGCATGTATCAAGGGGCTGTGAAGAAACTTTTGTTGGATTCTAAAGGAAAGTGCTGTTGTGGATCCTAATAGTGGGTGCGAAACAGGCATTTGCGTGGTCTGTTGAGCTCACTAATAGTGCGTGCGAAACAGGCAAGTGCGAAACTAAAATCTGGATTCTTGCAGGCTGCTGATGTTGCCAAACCTACGGAGCGATTGAGCAACAAACAACTAATCTTCCAGAATATAAATTATGCACTTGACCTATATCTGATATACGTGTTGACATTGTCAATTTTCCCAGGATTCGTATTTGAAAATACTTGTAAAACACAAGTTGGGCAACAAATGGTACCCTCTTGTTCTGATAGCAATGTACAATGTGTTGGATCTTATATCAAGATACATTCCCCTTGTGCCATGTTTGAAATTGGAGTCTAGGAACGGCCTCCTGGTTGCAGTACTCTCTCGTTTTCTACTCATTCCTGCATTCTGCTTCACTGCAAAATACGGTGATCAAGGATGGATGATCTTTCTCGTTTCTTTCTTGGGACTGACAAATGGCTATCTCATTGTCTGTGTTCTTACAATTGCACCAAGAGGTTACAAGGGGCCTGAAGCAAATGCGTTGGGGAATTTGCTTGTGCTGTTCTTATTAGGTGGCATATTTTCAGGGGTAGCCCTTGATTGGCTTTGGCTCATAGGCAAAAAGAAGGCCTTCTAGAGTGCTAAATCTGCCTGCAACTGATAAACAAAGTTGGTCCTCTTTCATTAATTATATGTTGGATTTTTCAAAACATATATATAAATAGTGAAAACAATAAATTTTAAAACAAAAAAAAAAAAAAAA


gi|46840529|gb|CN522160.1|CN522160 GQ0123.B3_M22 GQ012 Populus trichocarpa x Populus deltoides cDNA clone GQ0123_M22 5', mRNA se 

ATTGAGTGCAGCGTTGATGA
|||||| |||| | ||||||
TAACTCCCGTCACTACTACT

EST sequence (targeted fragment marked with yellow):
CAACAGAGAGAGTAGCACATGGGCAGTCTTTACAGATACTACAAACCCCTGACCTCAATCTGCTTCTCTCCACCGCCTACAAAATCTTACCTCCTCCATTCAATCAAATTCAAAACCCATTTTTCTCCCACCAAGAAGACAAGACTACACCGTTTCTTCACCTCTCTAACATCATCATCACTGCCCTCAATCAAAACCAACGGTGGAGATGCCTCTGCTGCAAGTCAATCATCAGAACTGTGGCTATACAACACAATGAGTAGAAAAAAAGAGCTATTTAAGCCAAAAGTCGAGGGTAAAGTTGGAATGTATGTTTGTGGTGTCACTGCTTATGATTTGAGCCATATTGGACATGCTCGTGTATATGTTACCTTTGATGTTTTATTAAGGTATCTAAAGCATTTGGGGTTTGATGNTCATTATGTTCGAAATTTCACCGAATGAATTANNAGANNATNCGATCAGTTTGAGTAAACNNTNCTNNNNNNNNNTCCTTC


gi|73901337|gb|DT504075.1|DT504075 WS0138.BR_O16 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS0138_O16 5' 

ATTGAGTGCAGCGTTGATGA
|||||.|||||||.|| |||
TAACTTACGTCGCGACCACT

EST sequence (targeted fragment marked with yellow):
GATTGCAATTGAAAGTGAGCTAGCTAGGGGAGGCTTTCCTGGATTGGAGAAACATCATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGTTATTAAATTGTTACCAACCCTTTATGGGGCATGGCATCATTTCACCAGCGCTGCATTCAATCATGTTTTTCTAACTCTTCCGGGCATTGCGTGCATGTATCAAGGGGCTGTGAAGAAACTTTTGTTGGATTCTAAAGGAAAGTGCTGTTGTGGATCCTAATAGTGGGTGCGAAACAGGCATTTGCGTGGTCTGTTGAGCTCACTAATAGTGCGTGCGAAACAGGCAAGTGCGAAACTAAAATCTGGATTCTTGCAGGCTGCTGATGTTGCCAAACCTACGGAGCGATTGAGCAACAAACAACTAATCTTCCAGAATATAAATTATGCACTTGACCTATATCTGATATACGTGTTGACATTGTCAATTTTCCCAGGATTCGTATTTGAAAATACTTGTAAAACACAAGTTGGGCAACAAATGGTACCCTCTTGTTCTGATAGCAATGTACAATGTGTTGGATCTTATATCAAGATACATTCCCCTTGTGCCATGTTTGAAATTGGAGTCTAGGAACGGCCTCCTGGTTGCAGTACTCTCTCGTTTTCTACTCATTCCTGCATTCTGCTTCACTGCAAAATACGGTGATCAAGGATGGATGATCTTTCTCGTTTCTTTCTTGGGACTGACAAATGGCTATCTCATTGTCTGTGTTCTTACAATTGCACCAAGAGGTTACAAGGGGCCTGAAGCAAATGCGTTGGGGAATTTGCTTGTGCTGTTCTTATTAGGTGGCATATTTTCAGGGGTAGCCCTTGATTGGCTTTGGCTCATAGGCAAAAAGAAGGCCTTCTAGAGTGCTAAATCTGCCTGCAACTGAT


gi|52509153|gb|CV256178.1|CV256178 WS0243.B21_C09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0243_C09 

ATTGAGTGCAGCGTTGATGA
 ||||.|.||| ||||||||
GAACTTATGTCACAACTACT

EST sequence (targeted fragment marked with yellow):
CATCGGTGCTTTCGACCTGTGAAGAATCGTTTTGGGTCCACAGATGAGGTGTGCAATTCTAGGGATCTACAACTTTGTGCATATTTGTGGCATGCATTCTTTTCATCTGGACATTCTGCTTGGAGTTTTTGAAATGTCACAGTTGGGTCTGGCAGTTGTTTCCAATCCAAGTGAGATATTCTTAACTGAGCAGCACTCAGATTCAGATTTTTTAGCTGGGCTAGCTGTTGCTGTAATAATGGATGGATCTCGAAGTTTCCTTATTGAAATTCAGGCTCTTTGTGTCTCTGGTTCATCAGTTTCAAGGCACATTAATGGAATCCAATCAAGCCGAGCTGACATGATCATATCTGTTCTTATAAAGCAAGCTGGTTTAATGCTCCAAGAGAATGCCATCTTTTTGAATGTTGTTAGCGGGGTAATGCTGACAGAGACTGCTGGTGATGTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAATTTCCCATTCCCAATAACATTGCATTCATCGGAGAAATTGGCCTTGGTGGTGAGCTTCGCGCAGTACCCAGGATGGAGAAAAGAGTACATACTGTCGCGAAACTGGGATATAAAATGTGCGTAATCCCGAAATCAGCTGAAAAATCTCTTGCAAATCTAGGTTTCCAAGGGATGAAAATTGTTGGGTGCAAGAATCTAAAAGAAGTCATCAACACTGTATTCAAGGCTTGATGAAATGCAGTTGGAAATTATTCTGCCATTTTTTGCACACAGGGCTGGTGGAGAGATGTAATGCTTTGTACATATTGTATTTCTTATTGTTAGAAAATCTGTAATCATGTTAAAATGTTTATTGGATTTGATATGATCGTGTTTCTGTGATCAAAAAAAAAAAAAAAAAA