| mature miRNA: ATTGAGTGCAGCGTTGATGA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225413071|gb|FS199490.1|FS199490 FS199490 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3139E18 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): ATGCCTTAACCAAAGTGGCAGCAACACTATTGTCAATGCCCTCAAACAGGGTTACNNNNNAGACGAGGGCTTGAACCTGGTGAGTGATGCNNNTGAACAGCTATTGATTTACATACCTTTTAATCAAGTCATCAAACTGCATTCAATCGTTATCAAAGGACCTGAGGAGGAAGGTCCTAAAACTGTGAAGCTGTTTTCTAACAAGGAGCACATGGGATTTAGTAATGTTAATGATTACCCTCCAAGTGACACAGTTGTTTTATCTGAAGATAACCTCAAGGGAAAACCAGTTACCTTGAAGTATGTCAAGTTTCAAAATGTTNNNAGTGTGACCATTTTTATTGAGGATAATCAACATGATGGGGAAACTACAAATGTTCAAAAAATTGTTTTGTATGGATCAACGGTGGAAACAACAGATATGAAA | |||||||||
gi|117721551|gb|DB726512.1|DB726512 DB726512 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2052K0 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AAGGATTCTTCCCTTTCTCTAAATATTTCTCTCTCAAGACAAGAACTGTAGCGTACAACTTCCGTCAACCATGGCTGCCGAATCTGCTTTTGCAATTCCCAAAGGCCAAGTTGATTTGATGGACTTTGTAGACTGGTCTGGCGTCGAATGCCTTAACCAAAGTGGCAGCAACACTATTGTCAATGCCCTCAAACAGGGTTACAGAGAAGACGAGGGCTTGAACCTGGTGAGTGATGCAGATGAACAGCTATTGATTTACATACCTTTTAATCAAGTCATCAAACTGCATTCAATCGTTATCAAAGGACCTGAGGAGGAAGGTAGCTAATAGATTTGTGGTGTCTCTTTCTACCCCTAGTAATCTTTTGCTGCGTACACAAGAACCTTAGTTTTATCTCTTGCAATTTCTGCTTTGGTGTTGGCTTCTGAGATTTGTTAACGCACAACTAAGCTTTCTCAAAAAATTGTTGATGCATAACTAGGTGTTCTCAAGTTTCTCCTACATCTTTTTTTATCATTGTGATGAGAGAAGTCTCTACATAATCCTTCATTTCATCTTTTTTTTTTTGAT | |||||||||
gi|16217307|gb|BI921279.1|BI921279 EST541182 tomato callus Solanum lycopersicum cDNA clone cLEC72D16 5' end, mRNA sequence ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): ATGCCAATGTTGTGGATGTGGAGAATGCAGCGCTAGCAACTGGCTCAGCACCTAACAACTCTGATGCTTACACTATTAACGGCTGGCCGGGCGATCTTTACCCTTGCTCCGTTAATCAAACATACAAGTTGAAGGTGAAACATGGAAAAACATATCTCCTTCGTATCATCAACGCTGCGCTCAATAACCAACTCTTTTTCAAAATCGCCAATCATAAAATGAAAGTTGTCGCGGTTGATGCTGCTTATACTGATCCCTACGTCACGGACGTAGTTGTCACCGGGCCGGGCCAGACGACTGACGTCCTCTTGACGGCCGATCAGCTACCGGCGTCGTACTACATGGCGGCTAACCCCTATGCTAGTGCAGCCGGGGTGCCATTTGACAACACCACAACTAGAGGAATTATAGTGTATGAAGAAGCATTACTAGCATCAACTCCCATAATGCCAATTTTACCTGCCTTTAATGACACACCAACAGCCCATAAGTTTTTCACCAACATAACTGGGCTTGTAACTAGCCCATTTTGGAACCCACCATCTCGAAAAGTCGACGAGCACATGTTTATTACTATTGGGCTGGGCCTAACTGCTTGTGGAAAATCAAGAAATGCAACATGTGGAGGCCCAAATGGACAACGATTTTCTGCTAGTATGAACAATGCATCTTTCCAGTTTCCAGACAAGATTTCAATGTTGGAGGCA | |||||||||
gi|150434033|gb|ES892626.1|ES892626 LET051F8_2005-10-06_1/LET051F8_G05_1 Solanum lycopersicum trichomes Solanum lycopersicum cDN ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): GGGGAGGATTCTTCCCTTTCTCTAAATATTTCTCTCTCAAGACAAGAACTGTAGCGTACAACTTCCGTCAACCATGGCTGCCGAATCTGCTTTTGCAATTCCCAAAGGCCAAGTTGATTTGATGGACTTTGTAGACTGGTCTGGCGTCGAATGCCTTAACCAAAGTGGCAGCAACACTATTGTCAATGCCCTCAAACAGGGTTACAGAGAAGACGAGGGCTTGAACCTGGTGAGTGATGCAGATGAACAGCTATTGATTTACATACCTTTTAATCNAGTCATCAAACTGCATTCAATCGTTATCAAAGGACCTGANGAGGAANGTNCTAAAACTGTGAAGCTGTTTTCTNACANGGAGCACATGGGATTTAGTNATGNTNATGNTNNCCTCCAAGTGACNCANTNG | |||||||||
gi|225415248|gb|FS184530.1|FS184530 FS184530 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3032A14 ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): ATGGCTGCCGAATCTGCTTTTGCAATTCCCAAAGGCCAAGTTGATTTGATGGACTTTGTAGACTGGTCTGGCGTCGAATGCCTTAACCAAAGTGGCAGCAACACTATTGTCAATGCCCTCAAACAGGGTTACAGAGAAGACGAGGGCTTGAACCTGGTGAGTGATGCAGATGAACAGNNNTTGATTTACATACCTTTTAATCAAGTCATCAAACTGCATTCAATCGTTATCAAAGGACCTGAGGAGGAAGGTCCTAAAACTGTGAAGCTGTTTTCTAACAAGGAGCACATGGGATTTAGTAATGTTAATGATTACCCTCCAAGTGACACAGTTGTTTTATCTGAAGATAACCTCAAGGGAAAACCAGTTACCTTGAAGTATGTCAAGTTTCAAAATGTTCGCAGTGTGACCATTTTTATTGAGGATAATCAACATGATGGGGAAACTACAAATGTTCAAAAAATTGTTTTGTATGGATCAACGGTGGAAACAACAGATATGAAAGGCTTGAAGA | |||||||||
gi|261468501|gb|GT167834.1|GT167834 M82T7el_05_L23_T7-ZL LA3475 Type VII trichomes Solanum lycopersicum cDNA, mRNA sequence ATTGAGTGCAGCGTTGATGA EST sequence (targeted fragment marked with yellow): AGGGGAGGATTCTTCCCTTTCTCTAAATATTTCTCTCTCAAGACAAGAACTGTAGCGTACAACTTCCGTCAACCATGGCTGCCGAATCTGCTTTTGCAATTCCCAAAGGCCAAGTTGATTTGATGGACTTTGTAGACTGGTCTGGCGCCGAATGCCTTAACCAAAGTGGCAGCAACACTATTGTCAATGCCCTCAAACAGGGTTACAGAGAAGACGAGGGCTTGAACCTGGTGAGTGATGCAGATGAACAGCAATTGATTTACATACCTTTTAATCAAGTCATCAAACTGCATTCAATCGTTATCAAAGGACCTGAGGAGGAAGGTCCTAAAACTGTGAAGCTGTTTTCTAACAAGGAGCACATGGGATTTAGTAATGTTAATGATTACCCTCCAAGTGACACAGTTGTTTTATCTGAAGATAACCTCAAGGGAAAACCAGTTACCTTGAAGTATGTCAAGTTTCAAAATGTTCGCAGTGTGACCATTTTTATTGAGGATAATCAACATGATGGGGAAACTACAAATGTTCAAAAAATTGTTTTGTATGGGTCAACGGTGGAAACAACAGATATGAAAGGCTTGAAGAAGATTGAGGACCACTGATCCTGCAAAAGATCATTATAATTGTTCATCATTTTAAGAATTTTGTTTTCTTTTTAACTTCTGTAGTTTACGACAGAAGTAATTGGAAACTTGATACACTGGATATACCAAATTACAGTGTGAGCTGTCGCTGCTTTGTTCGATGC | |||||||||