| mature miRNA: ATTGGAGTGAAGGGAGCTCCA species: Glycine max database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|120495074|gb|EH223241.1|EH223241 JGI_ABWZ3903.fwd ABWZ Phakopsora pachyrhizi infected soybean leaf tissue 13-15 days post ino ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): CTCTTCCATGTGATCCCGTTCTTAACACCACTGATCAGTTTCATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTGCTTCTGTGCCCATATTTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTCAACATGGTAGCTGGGGCCCGCCAATGTCCCCACTTCCTTCACTGGAGTCTGTTGATACATTGATTCAGTCTCCTACACTTGAGCCTATTCTATCAGATCCCATTTCTCCACAAAGCAGTGGTTTGCTAGAAGCGATAGTCTACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTGCAAGAGACAATTGCTACAGCCAATGAAGTAGCTAATATTTCAACCTTGAATCATTCCTTTCAGACAGAATGGGATGAACTAGGCGATCCAAATTCCCCCTTAGGTCAATCTGCTGCTTCAGTCCTGACTGACTATACTCCTGTACGAATGTGCTCTGTGGATGGGTATCAATCAACTGAAACCAGTCAGGATCATGATGATAAGCATGAAGCACCTACCACCCAGTTCCCAGATAGTTCCAGTAAGAAAAAAATATTGAAACAGGTGGATTACACACAGCCAGATGCTTTACTTGACTTGGGTTGGTTTGGGAATAATACTAAGTATGAAAGCGATCAA | |||||||||
gi|151398256|gb|EV268134.1|EV268134 GLMA291TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGATCGATATCTAACGCTTTAGTCTTGCAATTGATATATAATTATCATCCAAAACATGTCACCAACAAACAACACTTTCGCAATTTTTGTCATCTTCTGCTGTGCCATATCCTTTGCCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGC | |||||||||
gi|192316000|gb|FK008855.1|FK008855 GLQA066TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGACCATCCAAAACAAACATTCCTCTCTTATCTCTAGCTATATAATAAACTTTTCCTGTTTCCACTCATCGATATCTAACGCTTTAGTCTTGCAATTGATATATAATTATCATCCAAAACATGTCACCAACAAACAACACTTTTGCAATTTTTGTCATCTTCTGCTGTGCCATATCCTTTGCCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGCTCAGCTTTCAGATTGATACTAAGATGTTGATGACATCAAGCCAAGCTTGCTCCTAGA | |||||||||
gi|192323565|gb|FK015331.1|FK015331 GLNBZ32TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGTTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGCTCAGGCTTTCCAGATTGATACTAAGAAGGTTGATGACATCAAGGCCAAGCTTGCT | |||||||||
gi|209706578|gb|BW667831.1|BW667831 BW667831 GMFL01 Glycine max cDNA clone GMFL01-28-B03 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GAACATTGAGTTATTCTATTTCTCCCGAGTATTCTGTTCTCCTTTATTAAGCAGCTAAAAATTTTAAGGAAAGGGAAAATGAAGAATCTTTGTCAGAATTTTGATGTTAGAGCCACGATTCCGGTTAAAATAGGAAAAAAATCGACTTGGGATGTTTTGTTTCCTCGTAGGTTGTGGTTGCCGACGTGGACGTGTGATCAGAGGAAGGAGGGGAAGTTGAACTTAAAGGTGCAGTGCGGTACTAGGAAAGAAGGGTGGGTTGAATCTGCGGGAAAAAGCGCGTTTGGGTTTGGCGTTTCGGCCGCGGTTTTGTTCTCTGTGTTCTGCTACTCGCCCGCGGCGCTTGCAGAGTCCCTCACCGTTGCTTTTCCCGTGTCTCGGGCGCCTGAGGTAAATGCAGTTCAAAGAACTCTTGTGGAAGCATGGGGTTTAATTCGAGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATTTGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGG | |||||||||
gi|192305083|gb|FG994633.1|FG994633 GLLEF07TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGAAAATGAAGAATCTTTGTCAGAATTTTGATGTTAGAGCCACGATTCCGGTTAAAATAGGAAAAAAATCGACTTGGGATGTTTTGTTTCCTCGTAGGTTGTGGTTGCCGACGTGGACGTGTGATCAGAGGAAGGCGGGGAAGTTGAACTTAAAGGTGCAGTGCGGTACTAGGAAAGAAGGGTGGGTTGAATCTGCGGGAAAAGCGCGTTTGGGTTTGGCGTTTCGGCCGCGGTTTTGTTCTCTGTGTTCTGCTACTCGCCCGCGGCGCTTGCAGAGTCCCTCACCGTTGCTTTTCCCGTGTCTCGGGCGCCTGAGGTAAATGCAGTTCAAAGAACTCTTGTGGAAGCATGGGGTTTAATTCGAGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATTTGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGGTTTAAAATTGGAAGTGATGGGAACGTACGAGGAGTGGGATTGTTCATAAATGTTGAGCCAAGAACAGACATTTGGTTGTCTTGTCATGTGTAGATGGCAGTCCAGCTGCTCGTGCTGGTATACATCAAGGGATGAATTGATTGAGATAAATGGTGAGAGCTTGATGGCATTGATAGTGAACTGCAGCACAAAGCTTAGAGGGATGCTGGACACTGTTACAGTAAAGTCAAAGACTCAGACAGATCTTTTAT | |||||||||
gi|254323673|gb|GR840314.1|GR840314 CCCC11186.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC1118 ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GAAATAATGGAAATTTGTAATGGGTAGAAGTACAGAAAATGTTCCTTCCCTTTGTTTTGAGTAGTTAAAAATTGGAGTTTGCTTCATTCCAGTTTCTACAACATTTATGTACTACCAATCTTCCTCTTTCCTTTCTGACTCTCAAGTGTTTCACAAAATCACTTCCACTAATTTGATTTGCCATTGCTTCTCAGGGTTCATAGATCCTGGCAAGAAAATTGTTATATCCTGGACAACAACATTGTCTCCCACGTCTTCTTATGCCTTCTATTGAGTATGAAAGAATCAAAGTGGTTAGGATAGTAGAACAGGAACGACTTAACCGAAGTGGCTAAGGATGTCTGGAGATATTTTCTTTTTTTCCTTTGTGTTTTTTGAGGGCAGGGAGGGGTGGGGAGAGGATTGGAATTGTACATGGTCGACCTATGAATGTAAAGTGTACACTTTACCGGATTGGATTATTTTTTTTAGGCCTAAATATTTTTTTTTGTTCGTGTAATTTTAACGTTTTTTTTATTTTCATTCATGCAAAAAAAAATTGTTAATCTTTATAAAATGTATTTTAGTTTTTGTCCTT | |||||||||
gi|192302437|gb|FG996691.1|FG996691 GLLER19TR JCVI-SOY1 Glycine max cDNA 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): TTTGATAACAATAATCATAATTTCAATAGTTATTAACATATACACGTCTAGCACCAAAGGCTTGAAAAACTTCTCTCTCTAAGGCCAAAGCGAAAATTAATTGATGAGGCCCTACCTATAACTTATGAAATAAAATAAAAAATTCCACAGTCTCATATATGTCACAAAATGAACCCAACTTAAAAAAACTTGGCATCATCACCACAACCAACTAATTTCTCTTGGCAACCAGCCTCATCAAGAAGCCATTTCTCAAGCAAAGAGAATGGCATAATTTCTGCACCAATAACATCAGGCTTGCTTTCATCTTGCAAAACAGTGGCCTCAGGAGACAATGACCGAGAGAATTCATCAGAGTTTGAAGACTCCAAAGACTGATCAAAATCAAACAATGATTCAAAATTGTTTTCAGACAATTCAGCACTGCTTGGTGGTCCCTTTGCTCCAATACTAGAAGCAGTATCAGCACCTGCTGCAGCAAAGTTGTTGAAGGAGTTCTGAGTCACAGATGATGAGTTTGTTCTTGAGGACTTTGGTGGGTTTTTCATCCAACCCTTTAGCATTCTAGCTATGTTGTCAGCACTTGAGGCATAGCACACAGTTTGTGTTGTTGTTGGTTTTGTGGAAGAGAAGGAGCTGCTACTATCTGAAGGGTTTGAGTTTGAGGCAGATAAATTACAAGATGGCTTCTCTGGTGAAAGAGCTTCACTGAGGGCTCTCTTTGCCATTTGGATATCAGTTTGGAGCCTTC | |||||||||
gi|151408343|gb|EV278151.1|EV278151 GLNA348TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence ATTGGAGTGAAGGGAGCTCCA EST sequence (targeted fragment marked with yellow): GGACCATCCAAAACAAACATTCCTCTCTTATCTCTAGCTATATAATAAACTTTTCCTGTTTCCACTCATCGATATCTAACGCTTTAGTCTTGCAATTGATATATAATTATCATCCAAAACATGTCACCAACAAACAACACTTTTGCAATTTTTGTCATCTTCTGCTGTGCCATATCCTTTGCCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCATCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGC | |||||||||