miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATTGGAGTGAAGGGAGCTCCA
species: Glycine max
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|120495074|gb|EH223241.1|EH223241 JGI_ABWZ3903.fwd ABWZ Phakopsora pachyrhizi infected soybean leaf tissue 13-15 days post ino

ATTGGAGTGAAGGGAGCTCCA
|||||||||||||||||||||
TAACCTCACTTCCCTCGAGGT

EST sequence (targeted fragment marked with yellow):
CTCTTCCATGTGATCCCGTTCTTAACACCACTGATCAGTTTCATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTGCTTCTGTGCCCATATTTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTCAACATGGTAGCTGGGGCCCGCCAATGTCCCCACTTCCTTCACTGGAGTCTGTTGATACATTGATTCAGTCTCCTACACTTGAGCCTATTCTATCAGATCCCATTTCTCCACAAAGCAGTGGTTTGCTAGAAGCGATAGTCTACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTGCAAGAGACAATTGCTACAGCCAATGAAGTAGCTAATATTTCAACCTTGAATCATTCCTTTCAGACAGAATGGGATGAACTAGGCGATCCAAATTCCCCCTTAGGTCAATCTGCTGCTTCAGTCCTGACTGACTATACTCCTGTACGAATGTGCTCTGTGGATGGGTATCAATCAACTGAAACCAGTCAGGATCATGATGATAAGCATGAAGCACCTACCACCCAGTTCCCAGATAGTTCCAGTAAGAAAAAAATATTGAAACAGGTGGATTACACACAGCCAGATGCTTTACTTGACTTGGGTTGGTTTGGGAATAATACTAAGTATGAAAGCGATCAA



gi|151398256|gb|EV268134.1|EV268134 GLMA291TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
|||.||||||..||||| ||
CAACTTCACTTTTCTCGACGT

EST sequence (targeted fragment marked with yellow):
GGATCGATATCTAACGCTTTAGTCTTGCAATTGATATATAATTATCATCCAAAACATGTCACCAACAAACAACACTTTCGCAATTTTTGTCATCTTCTGCTGTGCCATATCCTTTGCCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGC



gi|192316000|gb|FK008855.1|FK008855 GLQA066TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
|||.||||||..||||| ||
CAACTTCACTTTTCTCGACGT

EST sequence (targeted fragment marked with yellow):
GGACCATCCAAAACAAACATTCCTCTCTTATCTCTAGCTATATAATAAACTTTTCCTGTTTCCACTCATCGATATCTAACGCTTTAGTCTTGCAATTGATATATAATTATCATCCAAAACATGTCACCAACAAACAACACTTTTGCAATTTTTGTCATCTTCTGCTGTGCCATATCCTTTGCCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGCTCAGCTTTCAGATTGATACTAAGATGTTGATGACATCAAGCCAAGCTTGCTCCTAGA



gi|192323565|gb|FK015331.1|FK015331 GLNBZ32TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
|||.||||||..||||| ||
CAACTTCACTTTTCTCGACGT

EST sequence (targeted fragment marked with yellow):
TGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCACCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGTTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGCTCAGGCTTTCCAGATTGATACTAAGAAGGTTGATGACATCAAGGCCAAGCTTGCT



gi|209706578|gb|BW667831.1|BW667831 BW667831 GMFL01 Glycine max cDNA clone GMFL01-28-B03 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
||| |||||||.||| |||||
TAAGCTCACTTTCCTAGAGGT

EST sequence (targeted fragment marked with yellow):
GAACATTGAGTTATTCTATTTCTCCCGAGTATTCTGTTCTCCTTTATTAAGCAGCTAAAAATTTTAAGGAAAGGGAAAATGAAGAATCTTTGTCAGAATTTTGATGTTAGAGCCACGATTCCGGTTAAAATAGGAAAAAAATCGACTTGGGATGTTTTGTTTCCTCGTAGGTTGTGGTTGCCGACGTGGACGTGTGATCAGAGGAAGGAGGGGAAGTTGAACTTAAAGGTGCAGTGCGGTACTAGGAAAGAAGGGTGGGTTGAATCTGCGGGAAAAAGCGCGTTTGGGTTTGGCGTTTCGGCCGCGGTTTTGTTCTCTGTGTTCTGCTACTCGCCCGCGGCGCTTGCAGAGTCCCTCACCGTTGCTTTTCCCGTGTCTCGGGCGCCTGAGGTAAATGCAGTTCAAAGAACTCTTGTGGAAGCATGGGGTTTAATTCGAGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATTTGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGG



gi|192305083|gb|FG994633.1|FG994633 GLLEF07TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
||| |||||||.||| |||||
TAAGCTCACTTTCCTAGAGGT

EST sequence (targeted fragment marked with yellow):
GGAAAATGAAGAATCTTTGTCAGAATTTTGATGTTAGAGCCACGATTCCGGTTAAAATAGGAAAAAAATCGACTTGGGATGTTTTGTTTCCTCGTAGGTTGTGGTTGCCGACGTGGACGTGTGATCAGAGGAAGGCGGGGAAGTTGAACTTAAAGGTGCAGTGCGGTACTAGGAAAGAAGGGTGGGTTGAATCTGCGGGAAAAGCGCGTTTGGGTTTGGCGTTTCGGCCGCGGTTTTGTTCTCTGTGTTCTGCTACTCGCCCGCGGCGCTTGCAGAGTCCCTCACCGTTGCTTTTCCCGTGTCTCGGGCGCCTGAGGTAAATGCAGTTCAAAGAACTCTTGTGGAAGCATGGGGTTTAATTCGAGAAACATTTGTTGATCCTACATTTAATCATCAAGATTGGGATTTGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCCCTGAACTCAGCTGATGCAGCATACACAAAACTCCGTGGAATGCTTTCTACCCTTGGAGATCCTTTCACTCGAATTATCAGCCCAAAGGAATACCAAGGGTTTAAAATTGGAAGTGATGGGAACGTACGAGGAGTGGGATTGTTCATAAATGTTGAGCCAAGAACAGACATTTGGTTGTCTTGTCATGTGTAGATGGCAGTCCAGCTGCTCGTGCTGGTATACATCAAGGGATGAATTGATTGAGATAAATGGTGAGAGCTTGATGGCATTGATAGTGAACTGCAGCACAAAGCTTAGAGGGATGCTGGACACTGTTACAGTAAAGTCAAAGACTCAGACAGATCTTTTAT



gi|254323673|gb|GR840314.1|GR840314 CCCC11186.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC1118

ATTGGAGTGAAGGGAGCTCCA
|.||||.||||| .|.|||||
TGACCTTACTTCGTTTGAGGT

EST sequence (targeted fragment marked with yellow):
GAAATAATGGAAATTTGTAATGGGTAGAAGTACAGAAAATGTTCCTTCCCTTTGTTTTGAGTAGTTAAAAATTGGAGTTTGCTTCATTCCAGTTTCTACAACATTTATGTACTACCAATCTTCCTCTTTCCTTTCTGACTCTCAAGTGTTTCACAAAATCACTTCCACTAATTTGATTTGCCATTGCTTCTCAGGGTTCATAGATCCTGGCAAGAAAATTGTTATATCCTGGACAACAACATTGTCTCCCACGTCTTCTTATGCCTTCTATTGAGTATGAAAGAATCAAAGTGGTTAGGATAGTAGAACAGGAACGACTTAACCGAAGTGGCTAAGGATGTCTGGAGATATTTTCTTTTTTTCCTTTGTGTTTTTTGAGGGCAGGGAGGGGTGGGGAGAGGATTGGAATTGTACATGGTCGACCTATGAATGTAAAGTGTACACTTTACCGGATTGGATTATTTTTTTTAGGCCTAAATATTTTTTTTTGTTCGTGTAATTTTAACGTTTTTTTTATTTTCATTCATGCAAAAAAAAATTGTTAATCTTTATAAAATGTATTTTAGTTTTTGTCCTT



gi|192302437|gb|FG996691.1|FG996691 GLLER19TR JCVI-SOY1 Glycine max cDNA 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
|||||||..|||||| | |||
TAACCTCGTTTCCCTGGTGGT

EST sequence (targeted fragment marked with yellow):
TTTGATAACAATAATCATAATTTCAATAGTTATTAACATATACACGTCTAGCACCAAAGGCTTGAAAAACTTCTCTCTCTAAGGCCAAAGCGAAAATTAATTGATGAGGCCCTACCTATAACTTATGAAATAAAATAAAAAATTCCACAGTCTCATATATGTCACAAAATGAACCCAACTTAAAAAAACTTGGCATCATCACCACAACCAACTAATTTCTCTTGGCAACCAGCCTCATCAAGAAGCCATTTCTCAAGCAAAGAGAATGGCATAATTTCTGCACCAATAACATCAGGCTTGCTTTCATCTTGCAAAACAGTGGCCTCAGGAGACAATGACCGAGAGAATTCATCAGAGTTTGAAGACTCCAAAGACTGATCAAAATCAAACAATGATTCAAAATTGTTTTCAGACAATTCAGCACTGCTTGGTGGTCCCTTTGCTCCAATACTAGAAGCAGTATCAGCACCTGCTGCAGCAAAGTTGTTGAAGGAGTTCTGAGTCACAGATGATGAGTTTGTTCTTGAGGACTTTGGTGGGTTTTTCATCCAACCCTTTAGCATTCTAGCTATGTTGTCAGCACTTGAGGCATAGCACACAGTTTGTGTTGTTGTTGGTTTTGTGGAAGAGAAGGAGCTGCTACTATCTGAAGGGTTTGAGTTTGAGGCAGATAAATTACAAGATGGCTTCTCTGGTGAAAGAGCTTCACTGAGGGCTCTCTTTGCCATTTGGATATCAGTTTGGAGCCTTC



gi|151408343|gb|EV278151.1|EV278151 GLNA348TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence

ATTGGAGTGAAGGGAGCTCCA
|||.||||||..||||| ||
CAACTTCACTTTTCTCGACGT

EST sequence (targeted fragment marked with yellow):
GGACCATCCAAAACAAACATTCCTCTCTTATCTCTAGCTATATAATAAACTTTTCCTGTTTCCACTCATCGATATCTAACGCTTTAGTCTTGCAATTGATATATAATTATCATCCAAAACATGTCACCAACAAACAACACTTTTGCAATTTTTGTCATCTTCTGCTGTGCCATATCCTTTGCCTTCGCTTCTGACCCTGACACACTTCAAGACCTTTGTGTGGCACTTCCCTCTTCAGGTGTGAAGGTGAATGGATTTGCCTGCAAGGCAGAGTCAAATGTGACAGAAGCTGATTTCTTCTTTGCTGGTTTAGCCAAGCCTGGAGTTATCAACAACACAGTGGGATCTGTGGTTACTGGAGCTAATGTGGAAAAAATCCCAGGACTTAACACATTGGGGGTGTCATTCTCAAGAATAGACTACAAAGCTGAGGGACTTAACCCACCTCACACACACCCTCGTGCCACTGAGATTGTGTTTGTGTTGGATGGACAACTAGATGTTGGATTCATCATCACAGCCAATAAACTCATCTCAAAGTCAATTAAGAAGGGTGAAATCTTTGTGTTCCCAAAAGGTTTGGTGCACTATCAGAAGAACAATGGGGATAAGCCTGCTTCTGTGCTTTCTGCCTTCAACAGCCAACTCCCTGGCACAGTGTCTATAGCTGCAGCTCTTTTCACTTCAACACCAACTGTGCCTGATGATGTTCTTGC