| mature miRNA: ATTGGATTGAAGGGAGCTCCT species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|260194566|gb|GT126401.1|GT126401 WS0476.CR_H23 SS-BD-32 Picea sitchensis cDNA clone WS0476_H23 3', mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTAGAAACTTGAATATATAGAAATATTGAAACAATGAACACATGAATCGTGTTTTTGGAGCAGAAAACAGAATCTTGAAACATTGAACGCATGAATCGTGTCTGAGCATAAAATGGCGGTTATGGAACATCGAGGAGATTTACATCGATCGATTGAACTGTCTTGCGTGCAAATGTCAGGCAGATAAAACAAATGTGTGATGCAGCGTTGTGTTCATCTTCCTGAAGGACTCTGGTTATTCCTCATCCTGGGCTGTTACACACTACAGTCGTTAGTAGTACGTTCTCAATTACTAAGCATTCCAACAATAACACAATACTAGACGAAAATACGTAAACCAGCTGGAGGAAAGATTGATACAAATCTTTTATTGGGTCCAGCACGAGGCCTGCGAGGAGCTCCCTTCAATCCAATATAACGCCGCATAGTGGCATTCCAACTCCTGTGCCATGCACACCATTATCTTGCCACGAAAAATAGCTCCAGCAACGTGACAATGTAATAGAATCCATGAACCAGCAGTTGAATCATCCCTACACAGCCATTTATTGGGTTGAAGGAAGCGCCCCGTCAGCTCTTGCTTCTTTCCATTTATAGACCCCTAAATCTCGATAAATATTCTCAAGCTATCCTATATCTCACAATAAAAAGCTACACACAGGCAGAGCCTTGAAGGCAACAAAACAACATTACACGATAAAGAACCCAGTACTAACAGACTTACAAAAATCTGAAAGAAACACAAAAACTTGAAACCCAAAGCACACACAAAACACCCACATAACACCACAATACTA | |||||||||
gi|70254897|gb|DR507535.1|DR507535 WS0272.BR_G07 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0272_G07 3, mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCCAATCTGCTGTTCTACGTTTGCATAATGATCGGTTTTCAGAGATTCAATAATCTCATTCAAATACTCAATTTCACCACACTTCGAGCTGAGCTCTTTCTCTCAGTCGGCAACTTTATGACCCGTCCAATATAGCTCTTTCTGCTCAAATATAAGTTCATTTTGAAGTTTTTCCTCCTTTTCCTGCAATTCCTTCAACAATTTTTTTAAGTGGCCCAATTCATCAACTGATGCATGAACTCAATGGGGTGATATTACATTCAGATTCCCACTATTTAGGAAGCCTTTGAGATCTTTTCATAAGGGCGTAACCCGCACTTATCCGAATCTTTGTATTCTGTCGCGTAACAAAAGTCTTGTTACTTGCAATCTCCGGGTTTTGAGGAACTTCTAGAAAGGTAATCCGAAATATTTTTTTTAGCATGTTCACCTCTAGGAATGTACTGTAATCTTGCTGGTGGCTCTGACAGAAGTCGGAATGCCCTTTGTCCTTGAGGTATTCCCTTCCATCCAATTTGTCTTAACCATCGAGTTAATTTCCTTTCAGACTCCATTGACAGACTCGCTGCTCCGCGGTTGCGCATCACTAAGCTTGGTACCATTGATGGAATTCTTATGTCTGGGACATTGAGTAATTAATCACATTCTCCAA | |||||||||
gi|70307383|gb|DR524950.1|DR524950 WS02718.B21_K20 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02718_K20 5, mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GGAATTGAACCAGGAGAGGAGATACAGGACATGGCGGGCAGAGCAGGGAAACCGGCAACGACAGCCCTCCCCTTACTCATGCAAGCCTTCCGCAACAGAGCATCGGGCCATTTTAAGCAACCTCTGCCTTCTCTCAGACGGGCTTTTTCTCTTTATGATCAGATCAATGTTTTATCTGGTGTACCAGAAGACCAGATTCGCATCGAGGGGTGCACTGACACAGGATTTATTGCCAACGGAGTTGAGTATGAAGGTTCATTGATTTGTGTAAGCAATTTGATTCTTTCATGGCGTCCTAAACAATTTTCTGAGGTAACTCCTGACAGTTTGTCAATCTTCCAGCTTTTACGGCCTGTTCCAGAGATACTGGTGCTTGGATGTGGAAAGAGAACTGAGCTAGTAGACCCAAGCATTAGAAATTTCCTTCGATCCAATGGAATCAAATTGGAAGCTGTTGATTCGTGGCATGCAGCATCGACATTCAATTTTCTTAATGAAGAGGGAAGAATGGTTGCTGCTGCATTTTTGCCATCAGAAGTTTCTAGCTGAAATATGGATGTCTATTTTCTTCTAGACAATTTAAAGTGCTGCTGGAACAAATTGGTGATCTCTATATTGTGTTATGGTGCTAAGCCTTTTTGGCATTTACTAGTGACTACTACTTTTAACATTATCGATATGCTGGTTACAGATAAACTATGCAAAGCATCATTCTTTGTTTTTGTTTCTAGGTTTAAATGTTGTTATAACATGCATTGGAATTTGGAAGGTAGAATTTTTTGAAAAAAAAAAAAAAAAGAGCTCTTGG | |||||||||
gi|49045413|gb|CO223098.1|CO223098 WS01017.B21.1_P12 SS-R-N-A-11 Picea sitchensis cDNA clone WS01017_P12 3', mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GGGAGAGATTGTTATGCAGGAGCAGCTTCATCATGAGTTTTTAAGTAGCCAGCCTCAGCCTCACAGAATATCAAGTGCCCCCCCGGTGTGGAACTGCAACAGCATATATACAGATTTTGGGAGCAATAACACTAATAATATTGCTGTATCGGCGCCTAATATGATGAGAGGAGGAGGAGGCCACTATAACTCATTAACACTCAGGGGAACCCTTCAGTCCAGTTCAAGTCCTGTTTGTGTCCGATTTAACCCTCCGTTGCTGCACGATAATGCCGCCGCCGGCCAATGTCCTCAGACTGGTGACGGCTTTTCGGGCTTCCGGATTCCGGCACGAATTCAGGGCATTGACGAGAACGCCGATGTGAAGCCCTCCCCGGCTTTTTTGAATTTTTGTTTTTAATCACACTACTTCAGCTTTTTTACCAGGTTTGTTCGCTCCTCCCTGTTTCGTTTCATCCAGCTTGAATCCGCTGATTTTGGGACTGAGAAAGGCAGGAGCAGAGCAGAGAAATTTTTGTTTGATCCAGTGGCAAAGACAACCTGGGGAGAGGAGGCAGAATAGATTAGAATTTAAGAATAGAAAAAGTTTCAATAGAAACTTTGAATTTTATATATTTGTTTCAGCAACTTTGAGAGTATAACTTGTATGGGATTTATGTTTTGATACATTCATTTTGCTTGTATGGAATACCATCATCAATATAATATACCTATATTGATGGTTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|149972254|gb|ES872279.1|ES872279 WS02837.CR_L09 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02837_L09 3', mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): AAGAGCTCTTTTTTTTTTTTTTTTCTCACGAAAGGATCCAAGGCTTCATTAGTTGCAGCCTCTAACTTATCCTTTGCTGCCATGATCTCTAGTGGATCTTGACCCTGCAACCTAGCTTGCCAGGTAGAATCCAATTTCTTCTCCCATTCGGCCGCAGCTGTGGATTGCTCATCATGATTGTTCTTGCTTTCTGCTCTCACATGACGCAGACCCTTGGGAGGTTCTTTCAATTCAATCATTCCGTAGTAATCCAATCCATGAACTCGCCACAGGTAGGTAGCAACAACATCCAACAGCTCCAGACCTTCAAGGCCCTTCACAGTATTTGTGCCCCTCACAATTACAACACCTATTGAACCACTGATAGATTTGTCTCCTTCAAACTTGTCTTGCTCTGAACTACCAAGAATGTTTTCTTCTATACCTTTCTCTGTATCTAGTTTGCGAATAAGAGCCTGTCCAAGTTCTATATCCTTTTTAACTCGCCTTGGTTCAGAACTCACAGTAGGAGCCTTGGGAGCACTTGAAATGGGGTCATTTTCCTTTGCAGGGCCCCTACCATGTCTCCTCCTTTTGCCACTAACCTCAGCATCATCATCTGAATTGTGGTCACTGCCTTGACCACCTTTTGCAGATGATGGTATAGAACCAGTAGAACTTGGACCTATTTCTAGGGTTCCATTCTGTAGGTCCAAGAGGAACTCCTTTGCAGTTGCTTTTGCATTTTCATTTCTCCTTTGTATGACAGCCTCTAGGTGTGACGGGTCGTATTTATCCTTCAGCCAATCCTCATCTTTGTAAGCTTCAAAAAATGCACGCTTCTGCGTGG | |||||||||
gi|49048941|gb|CO226626.1|CO226626 WS01030.B21_D14 SS-R-N-A-11 Picea sitchensis cDNA clone WS01030_D14 3', mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): TATAGCCTATGTAGGGCTCTTGTTAATATTTGTGGATAAGGTTTGGGTGTGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCGGCGGTGGTTCAGCTGCTGATTCATGCATTCGACTGCCCTGTCCGTGACTTTCCAGCAGCCTGAATCAATCAATCTATCTCCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTATTGTCACTGGACACGCATTCCTTGGATTGAAGGGAGCTCCACTTATCCTCACCATCACTTGCTGCAACTTGTTTATATAATTTGTTTTTGCTTTGAATCCATTTCATCTCTGGCAATTTTCTTATGGGGATTTGTTTTGGGCTTACTAATAACTCTTTTGTGCCCTAAGCCCTTCATGCAACCGTGTTCCTATTTTTATTAGTTGAATCGTTGTTTGATTCAAACAAGACTTAGGTTTTACTTGATTGATCGGCCTCATTATAGTTTCTGGTATTGTAATTTCGGGAGAGTTCCATGGAAAATAATGCTAATCTAATATTTGTTTGTTGAGTGGCTGATTGTAGTACGTTAAGTGATTGATCTACGGTTTATTGTACCGGGGTTATCTATGAAGTGGCATGAGTGATAAAAAAAGCTTCTAGAATACAGTACATTTTTACTTGCAGGACATTCCATTGTAAAGGCTAAACATAGCCGATCCTGCCCTTTGTTATTTTGTTTATTCTTCTTCTAAAGCACCTGACTTTTCGCCAAATATTTTACATGGTGGAACTCCAGTCAATTGTAATGTTTTGATGCTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|70320503|gb|DR529407.1|DR529407 WS0273.B21_I23 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS0273_I23 5, mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): GACTTTACCGTAAACGCCATAGGATTTAAGTGATCACCCGGTGTTTTCAGTGTTAGTTGAATTGAACCAGGAGTGGAGATACAGGACAGGGCGGGCAGAGCAGGGAAACCGGCAACGACAGCCCTCCCCTTACTCATGCAAGCCTTCCGCAACAGAGCATCGGGCCATTTTAAGCAACCTCTGCCTTCTCTCAGAACGGGCTTTTTCTCTTTATGATCAGATCAATGGTTTTATCTGGTGTACCAGAAAGACCAGATTCGCATCGAGGGGTGCACTGACACAGGATTTATTGCCAACGGAGTTGAGTATGAAGGTTCATTGGATTTGTGTAAGCAATTTGATTCTTTCATGGGCGTCCTAAACAATTTTCTGAGGTAACTCCTGACAGTTTGTCAATCTTCCAGCTTTTACGGCCTGTTCCAGAGATACTGGTGCTTGGATGGGGAAAGAGAACTGAGCTAGTAGAACCAAGCATTAGAAATTTCCTTCGATCCAATGGAATCAAATTGGAAGCTGTTGATTCGTGGCATGGAGCATCGACATTCAATTTTCTTAATGAAGAGGGAAGAATGGTTGCTGCTGCATTTTTGCCATCAGAAAGTTCTAGCTGAAATATGGATGTCTATTTTCTTCTAGACNATTTAAAGTGCTGCTGGAACAATTGGTGATCTCTATATTGGTGTATGGTGCTAAGCCTTTTTGGCATTTACTAGTGACTACTACTTTTAACATTATCGATATGCTGGTTACAGATAAACTATGCAAAGCATCATTCTTTTGTTTTTGTTTCTAGGTTTAAATGGTGTTATAACATGGCATGGAAATTTGGAAAGGTAGAATTTTTTTGAAGATCTTTAACGTTGTATTCTAAA | |||||||||
gi|69444492|gb|DR492400.1|DR492400 WS0292.BR_D21 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0292_D21 3, mRNA sequence ATTGGATTGAAGGGAGCTCCT EST sequence (targeted fragment marked with yellow): CCAAGATGGAGTTCTAGGGCACCTCGATCCTCCCCGTGCAACTTGTAATGAAAGTATGCATGGAGGGATTCAATACAGTCAGCCAATGATTCAAGCAAAAAGGATTTTCAATTTACCATTCGACTAAACATCAATAAAACTATATTAATGTTGAATCAACCCTGGAATCTTGTTCACACCAGCTCCTTTCATTCCAATGTAGACCTTACATTTTTGGCTTTGCATATTTCCGTTGCTTTGGCCAAAATCTTGTCCGCGGACTTCTTCATATCGTTTTCCAACATCATCACCACATTTACTGGCACCATGAAAACTGGGCTTCCGGTTGCAAAAGGGGAAATTGGAGTGCGCTGAGCATGAATGAGAATGACTCTATCCTGCGATGTAAACAGGTTGTTAACAGCCCATTGGAGAGCGTTGATGCTCTCTTCTCTGTCGTCTACAGCCACCAATATGAGCCTGCCTGATTTATTCTGCTCCTCCATGGACTCCATTGCACTAGAGTTTGTCTCTACACCTATCTTCACACCGGCCATTAAATTGTTTTCCTCTATGCAGTCCATATAGAGGATGGTAAGTTGCAGGCAGACAGAAATCGAGA | |||||||||