| mature miRNA: ATTGGGGTGAAGGGAGCTCC species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22243757|gb|BQ858292.1|BQ858292 QGB9N21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB9N21, mRNA sequence ATTGGGGTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GGGTCAAATCCATGGATGGCTAGATATGTTTATAGTGTGATGTTTCTGTTAGCAAATTTGCTTGCTTGGGCTGTTCGTGACTATGGGCCCACTGCGTTGACTGAAATGAACAAATTGAAAAGTTGCAAAGGTGGTGACGATTGTTTAGGCACCGAAGGCGTTCTGAGAGTGAGCTTGGGATGTTTCATGTTCTATTTCACTATGTTTCTTTCAACTACTGGCACCTCAAAATTGTATGGACAAAAAGAATTGTGGCATTCTAGCTGGTGGTCGGCCAAGATCGTTCTCATGATCGCGTTAATCATGCTGCCTTTCTTTCTTCCTACACAAATTATTCAGTTATATGGGGACATTGCACATTTCGGTGCAGGGGTCTTTTTGCTAATCCAACTAATTAGTATTATCAGCTTCATTACATGGTTGAATGAATGTTGTCTATCCGAAAAATATGCCGAGAGATGCCACATCCATTGGATGCTTCTTGCAACTACTGCATATGTTGTGTGCATATTGGGGATCATTTTAATGTACATTTGGTACACACCACAACCCACTTGCTTGCTTAATATTTTCTTCATCACATGGACACTTGTACTCCTCCAACTTATGACAAGTGTCTCCCTTCACCCCAAAAGTTTATGGGACTCTATGTTGGGTT | |||||||||
gi|22256853|gb|BQ870444.1|BQ870444 QGD9B05.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD9B05, mRNA sequence ATTGGGGTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GAACATGAAGGAGGTTTTTAGAGTGTTTTTTTTCCATTCGGTGCCTTTGAACATTTTGTAGATTCTTGCGGAGGTGTAACCGCCGAAGAGTCCCATGAAGACCCATAAGAGGACCATGGCGGTCATTAGGCCACCGCGGTTGGAGGGGGAGAGGAATCCGAGGGAGGCAAAGATCATGGTGACGAGTGTCATTCCGAAGAGTTGGACGCCGGTTCCGACGTAGACGGAGAGGAGGCCGGAATAGAGTGGAGGTCGGAATACGTCACCGTGGACGAGTTTCCATCCAGTTTCTTCTTGGGCTTCGTCTTGGTTGTCGAGTTGGTTGTAGTTTGCAATGTCGCGGTAGAGTGTTCGCATCATGATCATGGCTACCATTCCAGAGAGGAAGAGGACAATCATTAGGGAGTTGATGATTGAGAACCAGTGGATTTGGTCGTCGTTCATGAGGAGGTAGGTGTCCCATCGTGATGCCCATTTGATCTCGCTTTCCTTGAAAGTAACATCATATGTAAATACGACCTCCTTATCTGTATCAACTTCTTGAGGTACAGTGCTTCCTTGAATTATATTTTTTGTGTTTTGGTTGCATGTCGACAATTGAGGGTTCTTTTCATCCCAATCTTTGTATTCATGGTTGATACTGTTTGGAGTAACTTCAAACCCAACAATTCGAGCAGAATCAGTCTNCAGATCCTTGTGAAACATGACTCTAAAGCTCAAATGATTATTGATAAAATATTTTTCCTCTTTGCTCC | |||||||||
gi|22235994|gb|BQ850525.1|BQ850525 QGB12N19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB12N19, mRNA sequence ATTGGGGTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): CGCACAGATAACGAAATCAAGAACTTTTGGAACACTAGGACCAAAAGAAAGCAACGTGCCGGATTACCAATTTACCCTCACGACATCTCTTTCCAACAACTCAACGATAACTCCCAGAATCAAAACATGCTCATGTTCCCCAATGGCGATTCCGGAATTTTCCCACCAACCACTAACCTCCACATTCCATCCATCGATTACAAAGATTTCATACTAAATCATGAGTTTTATCAAAATCAAATTCCCACCGAAAGTAGCTTGCTTGATATCGCATTCCCTATGCCAACACCATATCCACCCAAGCGCTTCAGGCCCGGTGGCGGTGGTGGTGGTGGTCTTGGTGATGTTTTTTCTGGCTTGAATGGATATGAAGATGAGAAGATTGGTCAAACTTTGACCCCATCATCATCATCTTACTTATATAATACATGCACAGGTAGCCATGCCTTTATAAATGGCAACAATTGTTCATCTTTTGAGCCTAATTTATGGGCAATGAAGAATGAGCTCCCTTCACTCCAATATTTTCATGGTGCACCACCTTCTTCTTCTTCTTGTTCTTCCTTTGAAAATGAGTGGGCGGAATCTGATTTCCACTCACGTANGAACAGTGGTCTGTTAGAAGCTGTGCTCCATGAATCAGAAACCTTAAAATCTCGAAACCAGGAAATGATCTCACATGGTGATGATCAGAAATTGGGTTTCGGATGTTAT | |||||||||
gi|90505931|gb|DY967789.1|DY967789 CLSM18880.b1_O15.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18880, mRNA sequen ATTGGGGTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): ATCTGAAGATCTTCGTCTTTACAGTTCACACATGCCAGCTTCAAATTCAAGAAGCTTCTTTCACCTCAAAAATCTCCGATCTATGTCCATCGTCGCCGCTATCCATATCCAATTTCCGAGCAAAATTTCCCCCTTCCAGCTCAACCTAACGGAAGCTATCCGCGTTGTGCTTAAATGGGCACACAAATGGTGGACAGTAACATATTAGCCTTCATAGAGAATGAAGCGATGCCTCTACATGAAGTACTAAATGCAATAAGAATGGTAAAGAATGAAGCAGTTGAAAAGATCAATCCTTTAATCATCAGTCATGCTTCATCACTAAGTTCTTTGCAAATGGAGTCTTCCTCTGTGGATTTCATCATATCCATGGGTACATCAGAAGATTTTCCTGGTGATAATTTGGTTGAGGAATTTTCACGGGTTTTAAAGCCTGGTGGACAAATCTTTATTCATCAAAGTTTTGATGCTGCCAAAAAGAATACAACATCTTCCCTTGGGCGCAAGTTATTAGTTGCAGGGTTTTCAAATATTGAGGTGGTTCAGATGGCAGAGGTGCTGTCTGAAGGTCTCCAGTCTTTTGGGGTAAAGGGAAAGAAGCCTTCTTGGAAGGTTTTACCAAAAGTTGTGGTTGTTGATGAAATGGATGTTATAAATGAAGATAGTCTCTTATCTGAAGAGGATATGAAGAAGTCCCAACTCCCAACAATTGGAGATTGTGAAGTTGGAAGCAAACGAAAAACTTCACAACCACCACACTCCCTACAATTTGAACCCATCCGATTTCCTACTAAAACTTCACAAAACAAATTTCATGCATCTCACCCCCCATCAACAGATGATGATGACACATGTCTACCTGAACCATCTCG | |||||||||
gi|83991861|gb|DW137970.1|DW137970 CLSY5405.b1_I07.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY5405, mRNA sequence ATTGGGGTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTTTAAAATTTTGCAAATTTAAATGGGGGAATGATTCCGGAAACCAAAATTGCCCCCTTAAAAAAGGGGGGGTTTTCCCCCCCAAAAAAGGAGAACCCTTTTTCTCTTCGGCTTTGAAGCGCAAAAGGATAAGGGGCCCCCTTCCCCCCAAAAAAGAGGGGGGGG | |||||||||
gi|90505712|gb|DY967570.1|DY967570 CLSM18674.b1_C14.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18674, mRNA sequen ATTGGGGTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GAGAAAACTGTAGAGATCTCTTCACTTCAATGGTGGCAAATGTTAAGCTTTCTTCGATGAGATATCAAATCTATAAAGAAGATGGGTTTATCGGATATCAACAATCGATGCCTTCTCCACCTTCATCTTCATCGTCGTTTTCACCTCCATTTACTGTAACTTTCCATAAAACATCATCCCCTTCATCCTCTCCAAAAATCAGCCCAGCTGTTCTATTCATTATCGTGATTTTGGCCGTTTTGTTCTTCATCTCCGGTTTGCTTCACTTACTCGTTAGATTCTTAACAAAACACAACTCTCAATCGCACTCAAATCAATCAAATCGATTCCCAGATGGGTCTCCATCCGACACACTTCAACGACAACTCCAACAGCTTTTCCATTTACATGATTCCGGTTTAGATCAAACATTCATCGACGCTCTTCCTGTTTTTATGTACAAAGAAGTAGTCGGAGCTCACGAGCCCTTCGATTGCGCTGTTTGTTTATGCGAGTTTTCTGAAAACGATAAATTGCGGTTACTCCCAACGTGTAGCCATGCTTTTCATATCAGTTGTATAGATACATGGCTTCTATCGAATTCGACATGTCCCCTTTGCAGAAACACTCTTTTCGATCCTGAATTCTCCATGGATAATCCAATTTTCGATTTCGATGATCCCCGGGAAGCAGATGAGATTAGGGTTTCATCAAAAACAATTGATCCCGAACAAACGCCGATTGAAAAGGGGGTTTTTTCTGTCAGACTTGGAAAGTTCAGAAAATTGACTGAAAGTGAAGGCGAAACAGGAGGTGAGACTAGTAGTAGTAATTTAGATGCTCGAAGATGTTATTCAATGGGTTCTTATGAGTATGTTGTGAGGGACACGAATCTTAGGGTTCCTTGAATCATCATCAAAAAGATCTCCCGAATT | |||||||||