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mature miRNA: ATTGGGGTGAAGGGAGCTCCT
species: Lactuca sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|90505931|gb|DY967789.1|DY967789 CLSM18880.b1_O15.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18880, mRNA sequen 

ATTGGGGTGAAGGGAGCTCCT
 |||.||||||.|.|||| ||
AAACTCCACTTTCTTCGAAGA

EST sequence (targeted fragment marked with yellow):
ATCTGAAGATCTTCGTCTTTACAGTTCACACATGCCAGCTTCAAATTCAAGAAGCTTCTTTCACCTCAAAAATCTCCGATCTATGTCCATCGTCGCCGCTATCCATATCCAATTTCCGAGCAAAATTTCCCCCTTCCAGCTCAACCTAACGGAAGCTATCCGCGTTGTGCTTAAATGGGCACACAAATGGTGGACAGTAACATATTAGCCTTCATAGAGAATGAAGCGATGCCTCTACATGAAGTACTAAATGCAATAAGAATGGTAAAGAATGAAGCAGTTGAAAAGATCAATCCTTTAATCATCAGTCATGCTTCATCACTAAGTTCTTTGCAAATGGAGTCTTCCTCTGTGGATTTCATCATATCCATGGGTACATCAGAAGATTTTCCTGGTGATAATTTGGTTGAGGAATTTTCACGGGTTTTAAAGCCTGGTGGACAAATCTTTATTCATCAAAGTTTTGATGCTGCCAAAAAGAATACAACATCTTCCCTTGGGCGCAAGTTATTAGTTGCAGGGTTTTCAAATATTGAGGTGGTTCAGATGGCAGAGGTGCTGTCTGAAGGTCTCCAGTCTTTTGGGGTAAAGGGAAAGAAGCCTTCTTGGAAGGTTTTACCAAAAGTTGTGGTTGTTGATGAAATGGATGTTATAAATGAAGATAGTCTCTTATCTGAAGAGGATATGAAGAAGTCCCAACTCCCAACAATTGGAGATTGTGAAGTTGGAAGCAAACGAAAAACTTCACAACCACCACACTCCCTACAATTTGAACCCATCCGATTTCCTACTAAAACTTCACAAAACAAATTTCATGCATCTCACCCCCCATCAACAGATGATGATGACACATGTCTACCTGAACCATCTCG


gi|22235994|gb|BQ850525.1|BQ850525 QGB12N19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB12N19, mRNA sequence 

ATTGGGGTGAAGGGAGCTCCT
|||||.||||||||||||| |
TAACCTCACTTCCCTCGAGTA

EST sequence (targeted fragment marked with yellow):
CGCACAGATAACGAAATCAAGAACTTTTGGAACACTAGGACCAAAAGAAAGCAACGTGCCGGATTACCAATTTACCCTCACGACATCTCTTTCCAACAACTCAACGATAACTCCCAGAATCAAAACATGCTCATGTTCCCCAATGGCGATTCCGGAATTTTCCCACCAACCACTAACCTCCACATTCCATCCATCGATTACAAAGATTTCATACTAAATCATGAGTTTTATCAAAATCAAATTCCCACCGAAAGTAGCTTGCTTGATATCGCATTCCCTATGCCAACACCATATCCACCCAAGCGCTTCAGGCCCGGTGGCGGTGGTGGTGGTGGTCTTGGTGATGTTTTTTCTGGCTTGAATGGATATGAAGATGAGAAGATTGGTCAAACTTTGACCCCATCATCATCATCTTACTTATATAATACATGCACAGGTAGCCATGCCTTTATAAATGGCAACAATTGTTCATCTTTTGAGCCTAATTTATGGGCAATGAAGAATGAGCTCCCTTCACTCCAATATTTTCATGGTGCACCACCTTCTTCTTCTTCTTGTTCTTCCTTTGAAAATGAGTGGGCGGAATCTGATTTCCACTCACGTANGAACAGTGGTCTGTTAGAAGCTGTGCTCCATGAATCAGAAACCTTAAAATCTCGAAACCAGGAAATGATCTCACATGGTGATGATCAGAAATTGGGTTTCGGATGTTAT


gi|83991861|gb|DW137970.1|DW137970 CLSY5405.b1_I07.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY5405, mRNA sequence 

ATTGGGGTGAAGGGAGCTCCT
 |||||| |||||| ||.|||
AAACCCCCCTTCCCCCGGGGA

EST sequence (targeted fragment marked with yellow):
GTTTTTTTTTTTTTTTAAAATTTTGCAAATTTAAATGGGGGAATGATTCCGGAAACCAAAATTGCCCCCTTAAAAAAGGGGGGGTTTTCCCCCCCAAAAAAGGAGAACCCTTTTTCTCTTCGGCTTTGAAGCGCAAAAGGATAAGGGGCCCCCTTCCCCCCAAAAAAGAGGGGGGGG


gi|22243757|gb|BQ858292.1|BQ858292 QGB9N21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB9N21, mRNA sequence 

ATTGGGGTGAAGGGAGCTCCT
 ||||||||||||||| . ||
AAACCCCACTTCCCTCTGTGA

EST sequence (targeted fragment marked with yellow):
GGGTCAAATCCATGGATGGCTAGATATGTTTATAGTGTGATGTTTCTGTTAGCAAATTTGCTTGCTTGGGCTGTTCGTGACTATGGGCCCACTGCGTTGACTGAAATGAACAAATTGAAAAGTTGCAAAGGTGGTGACGATTGTTTAGGCACCGAAGGCGTTCTGAGAGTGAGCTTGGGATGTTTCATGTTCTATTTCACTATGTTTCTTTCAACTACTGGCACCTCAAAATTGTATGGACAAAAAGAATTGTGGCATTCTAGCTGGTGGTCGGCCAAGATCGTTCTCATGATCGCGTTAATCATGCTGCCTTTCTTTCTTCCTACACAAATTATTCAGTTATATGGGGACATTGCACATTTCGGTGCAGGGGTCTTTTTGCTAATCCAACTAATTAGTATTATCAGCTTCATTACATGGTTGAATGAATGTTGTCTATCCGAAAAATATGCCGAGAGATGCCACATCCATTGGATGCTTCTTGCAACTACTGCATATGTTGTGTGCATATTGGGGATCATTTTAATGTACATTTGGTACACACCACAACCCACTTGCTTGCTTAATATTTTCTTCATCACATGGACACTTGTACTCCTCCAACTTATGACAAGTGTCTCCCTTCACCCCAAAAGTTTATGGGACTCTATGTTGGGTT