| mature miRNA: ATTGGGTTTGGTTCGGGCGGAT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|20295012|gb|BQ157955.1|BQ157955 NF009B03PL1F1025 Phosphate starved leaf Medicago truncatula cDNA clone NF009B03PL 5', mRNA se ATTGGGTTTGGTTCGGGCGGAT EST sequence (targeted fragment marked with yellow): CACGGGTGAGGTAAATATAAACTAAACCATGCGTCCTAGTACGAAACCACACAATACGGCTGGGGACACCAGACAGCAAAAGGTTCCCTGACTAAAGGGAACAGAAGCTGGAGCTACACCGAGGAGGCGGGCCGTTCTAGAACTAAATGGATCCCCCGGGCTGCGAGAATTGTGGTACTAAGATCCCCCCCGAGAACCTGCCTCCGCCATCTTAACGACGTTAATGACAACATGAAATTAGGGTATCCTTATTAGAAACCACCACAAAAAAGGAAACACATCCCCCCGACCCGGACCCAATCACGCGAAGAGGCTGGAGAAATGGTTTATTGCTGCGCCGCTCACCCCCCGTCGTAAGATGGAGCAGGACCGTTCGGCGCAAACACAGGCCAGGTAAGGAAAAGACGATAGGTCCTCCCACAACGGCAGTGGGCTGGGTGGACATGTGTGGAAATCCCTAAACGAGCACAAAAACAAAGAAAAAACAGCCAAGTAGGATTACGTGTGAGTATCTCGGTTACTATCGCCTCTATAGTATATCTCTATATAATCTATACCAGCCGCGTGCGCATACGCGGCTCGGTCACAACAGTCGATATATTAATATATTGATCCACACCAACATGAGCGCGAGAGTAAGGAGAGACAACGCAACAACAGCACGCACCCCTCTCCCCCCGCGACTTATGAGATGAGCGTCAGCGTACAGGAGTGTTAGCACTCGAGTTGTATAGAGCTCATGACCTCGAGCGCACCGCAGCAGCATCAATAGAGTAAGGCGATCAGATAACTACACGACGCTCATAACAACAGTACGCGACACACCCCTACCTACAACATACGTGTCGACAACTATATATCCACCACCCCAAATAAGATCATAATCATCGATATGCATCCAACCTCGCCTATACTAGTGACTAGTCAGTACCAGCAGGTACGCTATGCTCACTCTATATATACATAACCACGTCGAGGCATATCGCTACATGTCATACAAGATACAATAGACATAGAGTAATGACGACGACCAGCAAACAGAGTCGAGAGAATATGAGCACGCTGTGCAGCGAGATCACGAATATTGCCACACGGGCTCCGCGCCGAAGAGAGCAGGAACACGTCGTCGCGTCCTGACAACACCACAGCTAAGAGTAGTCAACTAGAGAGTCTACTGACGCTGGGTGGGCGGCGCG | |||||||||
gi|148765930|gb|ES612624.1|ES612624 MTGland_A022_2007-05-02/MTGlandA022_F10_035_1 Medicago truncatula A17 glandular trichome Med ATTGGGTTTGGTTCGGGCGGAT EST sequence (targeted fragment marked with yellow): CNNNNNNNNNGCNTTACGGCCGGGGTNNCCTCTCGAACCAAACCCAATTTGACGGGTTTTCCCCGCTTTGACTGGGTTTGGGTTTTCCCCGATTTCAAAACACGGGTTTGGGATGGGTAATGGGGATATATGTACCCACTTCGAACCCGTACCCAAACCTGTCCCGAATGTAAAAAAATCAATTTACCACCCCTTTTGTATAAATAGAAACCCAAACTCTAAATCATTTCACTCACATAGTCAGAGTCTCAGTGTTTCANATGACACTCATTTATTACGGTTCTCTCTATTTTCATTTCATATCTCACATTATCGGCCTCTCTTTTCTTAATCACCATAGTCATTGATCGTCATCATCTATTTGCTGGATAATGCATTACAACATATCGCTCGACGCTGCTAAATACTTTTATTTTTATAAAAAAATATCCACTGCGGGGATGAGGATGAGGCGAGGATACCCAAACCCGNCNGAGACGGGGATGAGATTCGATTTCTCATCCCCGCTGGATATGGGTAGGGTAACGGGTAGGAATATGGAAGTAGGGTATGAGGACGGAGAAGATAAAACTCGTCTCCATCCTATCCCATTGCCATGCCTACACGTGGCGGGTATTTTTGTTAGTTTGTATGAGAGTGAGCATTTTTTGTTGGGAGAAGAGCAATTTTCCAACTATGCCGGCCTATTCTTTNNNAGTTACCTATTANCTTTTGCCNAACAGAAGANCTTCGCAAAATTTGTTCTTCATATTTATTTTTGGGTACAATTTGTTCTTCNTATTTTGTCCATATTGAGCACAATTTTNA | |||||||||
gi|148765945|gb|ES612639.1|ES612639 MTGland_A022_2007-05-02/MTGlandA022_H03_009_1 Medicago truncatula A17 glandular trichome Med ATTGGGTTTGGTTCGGGCGGAT EST sequence (targeted fragment marked with yellow): TTCNTTTNTTAANAAATGTANTTANCTCTATGTGAAAAATATAAATTATGAATTANTCCCTTTGTCACATATTCTATTTCAATTTANCAATTTTTATTGTTGCATTTANGCATGACAACAAAACTCATATTTATGGTTACCCGCTCGAACCAAACCTAATTTGACGGTTTTTTCTCGTTTTGATTGAGTTTGGGCATGGGTATGAGTTTTCCCTGATTTCAAAATACGAGTATGGGAGGGTAACGTGTATATATGTACCCACCCCGAACCCATACTTTAACCCGTCCAAAATGTAAAAAATTANTTTATGTTGATGCGTCNTGTTATTTTGTTTGATAATTATCATGTTAATGAAAACTACCGTTGATGTTTAAAAGATCAACTAAATCATTCCGTCTAACAAATGTTGAAGTGGGTGTACTGTTGGATAANGTATTACAACGTTTGCTCTTGGGGATGCAAAAAAAACTTCNATTTTTTAATAAAAAAANTTANTTAATGNGGGGATGGGG | |||||||||