| mature miRNA: ATTTCGGTTCGGTTCGGTTAAT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73894483|gb|DT497221.1|DT497221 WS01125.BR_N14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_N14 5', mRNA sequence ATTTCGGTTCGGTTCGGTTAAT EST sequence (targeted fragment marked with yellow): TCCCCGAACATTCACCCCTTAGCCGCCGCCCTCCCTTCCCCTCCCTTCTCTGCATATCTCATTCTCTCTCATTTTACTCTTTTTTTTCTCTCGTCCCTCTACTCTCTGTTCTGTTTTGATTTTTCTCCCTTTCCTCTACTATCTGCTCTGATTTGATCTTATGGATTTGGTTCCTTTGGGTTTTCTTCGGATCTTAGTTCTCCTATTGAGTCTGTGGTTGGCTCTACTAACAGCCAAATAGAGGACTATCAGATCCACCAAGAAAACCCCCTCCATTCTATATTCCGTCAAAAAATCTCATCTCTGACGTTAGTCTCCACCAACAGGACTGCTTGCTTACCAAAAGTTGCAGGCATCTCAAATAATTTGTCAAACGCATCTGAGATGACAAATGATGCAGCAGTAGGGTGTTTGGGGAGGGCAAAACAACATTTTGGGACTGGAGTATTGTTTTCTCAAAAGCCACATTAGACCTGGCCAGTGATCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGAACCGGTTTGAAAGGGAAAAAAACCGAACCGAACCGAACCGAAATTATTTGGTTTGAACTGGTTTTCGGTTCGGTTCGGTTCAAAAAATTAAAAAAATAATAATTCGGTGTGGTTGTTTATTTTGGTTCAAAACCGGACCGAACCGGAAATGCTCAGCACTAGTAAAACTTAAGGAGCTCCTTTGAGACAAAACTAGTTGAGGTTTACAAAACCTGGGACTGTGTGGGAGTGGTAGTCACAGACAAATATTATTGATTTGGACAAAAAAAAAAAAAAA | |||||||||
gi|52386411|gb|CV231668.1|CV231668 WS0195.B21_D15 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0195_D15 3', mRNA sequence ATTTCGGTTCGGTTCGGTTAAT EST sequence (targeted fragment marked with yellow): GGTTGGGCTGGAAGTGATTCTCTGTCTATTTCTGTCTGTTTCTTCATAAGCCAGAAACAGGAAAGAAGGCTAATTACAAATTACAGTTTGCTTTTTAAAGAAGGCTAAGCCAGTCTAAAAAAAACCAAAAAAAAAAAAACCAACTTCTAAACCGGATTTCCCCCCGGTTTTTTCCTTAAAAAACCAGATTTAACCAGACCGGACCAGTTCGGTTTGAACCGGTTTCCGGTCCGGTTTGAACCGGTTTCCGGTCCGGTTTGAACCGGTTTCCGGTCTAGTTCGGTTAATTTTTAACAAGAATATTGTAATTCGGTTCGGTTGGTTTTTTGGATCTAAACTGAACCGAACCGAACTGTGAACACCCCTACTCCAGGCCGAGCTAATAATCAGATGGACGTTCCTGTGCTGTGGCATTTGGATCGAGTCGCCACTGCGGTTTCTGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886570|gb|DT489308.1|DT489308 WS02538.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N21 3', mRNA sequence ATTTCGGTTCGGTTCGGTTAAT EST sequence (targeted fragment marked with yellow): ATTGAAATAAATTATGCATATACTGCATTCACCACCATTGTTAATGTGCTAGCATTTTTTTAAATGCAAAGACAAACATGCTTTAATAAGAAAATTCAATGCAACCTCAAATAAATTTTTTTTATCGTCACCCAATTTTTGTACAATATAAAAAAAGTCCCTTTAATTTATTTTCTCTTTACCGTATGAAAAAAAGTTACATAAGAGAAAAGAAAAAAAATTCAAGAGGAAAAAAAATAATAATTTGAAGTAAAGAAAAAAAAAATTTAAATTTTTTGAAAGCATTTTTGAAACGCAAAAATAAACATGCTTTAATAAGAAAGTTCAACCCAACCTCAAATGTAAAAAATTATCATCACCTAATTTTTGTAGAATATTAAAAAAACTCCCATCAATTTATTTCCTCTTTACTAGGGGTGAGCAAAAAAACCGAAAAACCGATTAAACCGAGAAAACCGGAAAACAAATAACCGAAAAAAAAAACCGATTAAAATTTTGAAAAAATCGGCCGGTTCGGTTTCGGTTTTATAAGCAAAAAAACCAAAAAAACCGAACCAAACCGAAACAAAACAAAACCAGAAAAAAAACCGAGCCAAACCAGAAAAACCAAGCCAAACCGAAAAAACCGAGCCAAACCGGTTTGAACCGGTTTCGGTTTTTTTTTTCAAAAAAAAATTTCGGTTTGGTTACTTTTTTTGATAAAAACCGAACCGAACCGAAAATGATCACCCCTACTCTTTACCATATGAAAAAAAAAATTCAATAAGAGAAAATAAATTAAAATTGATTTTTTTATATCATCACATCAAAATAATACAAAAACATTAAAAATATTAATTTGAATTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73875748|gb|DT478486.1|DT478486 WS02522.BR_O15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_O15 5', mRNA sequence ATTTCGGTTCGGTTCGGTTAAT EST sequence (targeted fragment marked with yellow): GTCTCCCTTCTCTCTGCCTCTCATCTCTCAAAAGTTTTGTGCATTGTCTTCTTCTCCATGCTCCATGCTCTCTGAGTCAAAACTGTCTTCTTCTCCATGCTCTCTGCCTCTCATCTCTCATCTCTCAAATCTGTCTCCTTCTCCTCCATGTTCTCTGTCTCTCATCTCTCATCTCTCATCTCAGACGGCGCGGGAATATGCAAAGAAAGGTTTAAGAATTCCAGTCTTGAGGCTATTCTATTACAAAATTTTGTAAGTAGTGTTTGAAATTGCTTCTTGAGGCTATCCTAGGCTTTCATCTAGTTCCAACGATTCCTACTTCTAACCACTCTTATTTCACACTTTTCAGGAAATTTCAAAACTTAAGAAGAAAGGACACTAAATCAAGATATATTCTAATTGAAGGGGTGTAATGGCACCGTAAGCTCATTGGGCTTGAAGAACAGGGAAGAGCGGACTAGCTAACCTAACTGCAAAGAAAGCAGTCACAGCTAGGGATATATTTTTTGTTTTGTTTTGTGTATTTTTTTCTGGGTTTAACTTCTGGGCAAAGATCTATCAAAATAAAAATTGAAGTTAATTTTCTGGAAAATGGAAGCAAGTACAAAACAGAAGTGTTGAAAAATGTTGTTGATAAAAAGCCCAGAAAAAATTCAACCGGAGTAATTTCAGTTTGAATCGGTTTGGAAGGGAAAAAACCCGAATCGAACCGAAATTAATCGGTTTTGACCGGTTTTCGGTTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73880811|gb|DT483549.1|DT483549 WS02522.B21_O15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_O15 3', mRNA sequence ATTTCGGTTCGGTTCGGTTAAT EST sequence (targeted fragment marked with yellow): GTCTCCCTTCTCTCTGCCTCTCATCTCTCAAAAGTTTTGTGCATTGTCTTCTTCTCCATGCTCCATGCTCTCTGAGTCAAAACTGTCTTCTTCTCCATGCTCTCTGCCTCTCATCTCTCATCTCTCAAATCTGTCTCCTTCTCCTCCATGTTCTCTGTCTCTCATCTCTCATCTCTCATCTCAGACGGCGCGGGAATATGCAAAGAAAGGTTTAAGAATTCCAGTCTTGAGGCTATTCTATTACAAAATTTTGTAAGTAGTGTTTGAAATTGCTTCTTGAGGCTATCCTAGGCTTTCATCTAGTTCCAACGATTCCTACTTCTAACCACTCTTATTTCACACTTTTCAGGAAATTTCAAAACTTAAGAAGAAAGGACACTAAATCAAGATATATTCTAATTGAAGGGGTGTAATGGCACCGTAAGCTCATTGGGCTTGAAGAACAGGGAAGAGCGGACTAGCTAACCTAACTGCAAAGAAAGCAGTCACAGCTAGGGATATATTTTTTGTTTTGTTTTGTGTATTTTTTTCTGGGTTTAACTTCTGGGCAAAGATCTATCAAAATAAAAATTGAAGTTAATTTTCTGGAAAATGGAAGCAAGTACAAAACAGAAGTGTTGAAAAATGTTGTTGATAAAAAGCCCAGAAAAAATTCAACCGGAGTAATTTCAGTTTGAATCGGTTTGGAAGGGAAAAAACCCGAATCGAACCGAAATTAATCGGTTTGAACCGGTTTTCGGTTCCAAAAAAAAAAAAAAAAAA | |||||||||