miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATTTGCGCTATCCATCCTGAG
species: Carica papaya
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|186814366|gb|EX244825.1|EX244825 PY03103X1F12.f1 PY03 Carica papaya cDNA, mRNA sequence 

ATTTGCGCTATCCATCCTGAG
 ||||| |||||||||||| |
AAAACGAGATAGGTAGGACAC

EST sequence (targeted fragment marked with yellow):
CACGAGGCGAACTATTGATAATTTGGAACTTAAGAGGAAAAGTATGCAGGGTACACTTGAAATTATACCTCTCAAAACTTTTTAGAAAATGTGCTAACACAAACCCAATAACCGAAATCATTACAAATAAACTTGATACAGGCGAATTGAACCACTAGTATTAGATTTAGAAGTAACAGCAGTATACATGAACTTATAAAGTTCTTTTTCTTCTTCCCTAAAGAATACCATTTTTGTTACACAGGATGGATAGAGCAAAAAACTACAGACTAGAGAAACAGTGCAGGCTATTGGTAATAAGGGCTTTATGGCCTATCTACATGTGGCACCAAGTGACATGAGTGACACAAAAATATCCTGATCAAAGAATGTTGGAAGAGAATGATTAACCTTCAT