| mature miRNA: ATTTGGAACGGAGAGAGTAAT species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49454466|gb|CO373151.1|CO373151 MJR012A08 Methyl jasmonate-treated root Lambda ZIPLOX Library (MJR) Saccharum hybrid cultivar ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): GTCGACCCACGCGTCCGCGGACGCGTGGGCTTTTGCAGGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAACAAAAGCACAGGTTATGTTATCAGTGAACACATTGACACAAATTTGAACTGATATATGTTGATAACAGACGTGACGTTTAATTGGAATCTTGCAGCATGATACACACACAGCAGCTCTTAGGTACTCCCTCCATTCCAAATTATAAGACGTATTGGGTTTTGTAGACACATTGATTTTATTATGTATCTAGACATAGCATATATNTNAGTGTATAGCAAAAGCTNTGTTTAGAAAAGNCAAAAACGTCTTATTATTTTGGAATGGAAGGGGGTCNAAACTAATCGGGAATGGATGGTTTGGTACTAAGAACTAGNAAATGGACTTTGACTTGGCCNAAAGGGGGNGGGTNTTTTAAAAGGGGACNTTGGCTTAACTTTTGGGAAAACAAGCCNTNTTTTTAAGGGTTTGCNNNGGGTCCTTTTTGGCTCCCAAGNTTCAGCCCCCCCCTGAAGCTTTAANGGGGGGGGGGAAATTTTTAAAACNCNGTTAAAAAAAACCCCTTTTTTTTTGGGGGGGGGTTTTTCTTNAAAAANNTNTTTTTTTTCCCCCT | |||||||||
gi|36026654|gb|CA285743.1|CA285743 SCEZSD1081A06.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCEZSD1081A06 5', mRNA seque ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): GAGATCGGCGTGATGGCGAAGAAGCAGCAACGGCAGGTTGTGTGCATGGTGTTCCTGGTGGCCTTCCTTGTCATCTCGGCCATGCACGCCGTCCCTGCAGAGGCCGGAAGGACGCTAGCAGAGTCGTCGGTGGGTTACGAACCGCTGAAACCAGGCGTCTTGGATCCTGACCGACCAAACACCCGGCGATGCAGAAACATCTACGAGTGCCCGCATACACATGGAACTGCAACGCCATGAGTGACACACAGTTTGGTCCGCCTAGCCCACTTGCATCCCTGTACCTAATAGATGATGGCATGCAACGTGGAATGGAGCCGAGAGGCTGCATCCTTCTGGAATTATATTCTCGGTTGCCATAGGATAAGATAGCGAATAATCCCCACACCTACAGGATCGGACCATCTAGCGGTGGACGGGTGGAATACAGTACTCTCTCCGTTTCAAATCATAAGTTGGTTTAACTTATTTTTGGTATATATATTTTGCTATGTATCTAAATATAATAATATCAAGATACATAGCAAAATGGATGTACCAAAAAATTCAAAACAACTTATAATTTGGAACAGAGGAAATGGTAACTTATTTTATGTGCCTAAACCATGGGATATTGCAGTCTGGCATTAAGCAGATTCGGGCATATGGATGAATATACAATAAGGTAATGAAAATTCGTGTCTCTAATGGAAACTACTAACCGTTGTTTACATTT | |||||||||
gi|36016149|gb|CA283051.1|CA283051 SCBGSD1049F07.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD1049F07 5', mRNA seque ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): CCCGATCGAGGAGATTCATCTTCAATCAGCTGGAGAGGAGATCGGCGTGATGGCGAAGAAGCAGCAGCGGCAGGTTGTGTGCATGGTGTTCCTGGTGGCCTTCCTTGTCATCTCGGCCATGCACGCCGTCCCCGCAGAGGCCGGAAGGACGCTAGCAGAGTCGTCGGTGGGTTACGAACCGCTGAAACCAGGCGTCTTGGATCCTGGTCAACCATACACCCGGCGATGCAGAGACATCAACGAGTGCCCGCATACACATGGAACTGCAACACCATGAGTGACACACAGTTTGGTCCGCCTAGCCCACTTGCATCCCTGTACCTAATAGATGATGGCATGCAACGTGGAATGGAGCCGAGAGGCTACATCCTTCTGGAATTATATTCTCTCGGTTGCCATAGGATAAGATAGCGAATAATCCCCACACTAACAGGATCGGACCATCTAACGGTGGACGGGTGGAATATAGTACTCTCTCCGTTTTAAATCATAAGTCGGTTTAACCTTTNTTTGGTATATATATTNTGCTACGTATCTAAGTATAATAATGTCAAGATACATAACANAATGAATGTACCAAAAAATTCANAACGACTTATAATTTGGAACAGAGGAAGTGGTAACTTATTTTATGTGCCTAAAACCATGGGATGTGCAGTCTGCCATTANGCAGAATCGGCAATATGTATGAATATACAATANGTAAATGAAAATTCAAGTCTCTAATGTAAACTTN | |||||||||
gi|36068545|gb|CA298353.1|CA298353 SCRFFL8035D10.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCRFFL8035D10 5', mRNA seque ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): CAGTCGGCGGCGATGGGCGGCGGCGGCGCACATGGCGGCACCACCTACAAGGGCTACACAATCCCGCACAACAAGCGCTGGCACACCGTCGCCGGCAAGGGCCTCTGCGCCGTGATGTGGTTCTGGGTCTTCTACAGGGCTAAGCAGGACGGTGCCACGCTCTTGGGTTTGCGTCATCCTTGGGATGGGCATGATGACCACTCTCATGGTCATGGACATGGGCATGAGGCATCATCATCGCCGTCTTCACATTAAGTTCCCTACTCGCTGCTGACGGTGATTCAATGCTTGGCATGTTCCAACAACTAAAGATCGAGTTAATAAATTCTACCATCCTGCATGGGACTATGTTGTTTGCAACTTGTTTAGCTCAAATCGGCTAAGGTTGGCTAACAACTACATGTACTAAAAAAATTAGCTCATTTGTTAGCCCTTTTGTTTTAATACACTACATCTAATTTTAGCTAGCAATTAGCTCTTTCATCAAATAGGCCAGGTAGCCTGAACTCGTCAACTCGTCGAGAACACAAATGGGAGGAGGTGTCGTCCTAAGAACCATGCATATGTAAATACTCACTCCGTTCCAAAATAAGTCATTTTGGATCCGTTCAAAANANANN | |||||||||
gi|239916128|gb|FF281710.1|FF281710 RAPSAG19 sugarcane leaf tissue from germinating seedlings at 15 days after planting Saccharu ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): AGTGAAAGCTCGGTAATCGCGATGCATCTAGATTCACGTCCACGCAAGAGAGAGGAGGGGGTCATCGGAGCGACCGGTGGGCGCAGAGACGAGGGAAAGTGCGCACGTGGGGAGGGGTGAAGGCGGACGAGGCGGGCTCACCGGTGTCCAGACGCGCGCGTCCATCAGGACGTCCGGACGCTAGCTACGCTGTTTTAGATTTGCATGTTTTAGTTTAAAACTTAGAGCATATATTGATGACCAATTTGGGCTCAAGATGAAAATATTAGGCAGGCCAATCCGCCAAACCAGCTAGCTAAGTTTTCCATTGTATCGGGCCTGACAATAGGGAAACTAGCCATGCTGATTTTAGCATAGTCCAGGTCCAACTTTGGAAACACATGTAGATTCTCAAGTTGTGAACGTTTCTAATGGGGATAAGACCACCCACCGTACCCTATAGAAATAGGAGGGGGTATGATTGATTCAAGGTATGGAAACAACTAAAAATAAACTAATCTACTCTCTCCGTTCTAAATTGTAAGTCATTCTATCTTTTCTAAATACATAGTTTTCACTATTGATCTAAACATAATGTATATCTAGATGCGTTGCAAAACATTGCATCTAGGAAATTCAGAACGATTTATAATTTAAAATAAAGGTGTACTTTATATACATCTTTAAACTCTATCTCTTTCAACACGAATACCTTGTTGTCCTGCACATATCTTGACGTGATTTGTGGACGTGAAATCGATCCCGGGCCCGTCGACTGCAGGGCTGCATGCAGCTTTCCTATAGGGGTCGTATTAAAGCTTGGCGTATCATGTCATAGCTGTTTCTGTGGAATTGTTTCCGCCCAATCCCAAACATACGACCGGAGCTTAGTTTAAGCCTGGGGTGCTATGT | |||||||||
gi|36016186|gb|CA283063.1|CA283063 SCBGSD1049G08.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD1049G08 5', mRNA seque ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): ACCCGATCGAGGAGATTCATCTTCAATCAGCTGGAGAGGAGATCGGCGTGATGGCGAAGAAGCAGCGGCGGCAGGTTGTGTGCATGGTGTTCCTGGTGGCCTTCCTTGTCATCTCGGCCATGCACGCCGTCCCTGCAGAGGCCGGAAGGACGCTAGCAGAGTCGTCGGTGGGTTACGAACCGCTGAAACCAGGCGTCTTGGATCCTGGCCAACCATACACCCGGCGATGCAGAGACATCAACGAGTGCCCGCATACACATGGAACTGCAACGCCATGAGTGACACACAGTTTGGTCCGCCTAGCCCACTTGCATCCCTGTACCTAATAGATGATGGCATGCAACGTGGAATGGAGCCGAGAGGCTGCATCCTTCTGGAATTATATTCTCTCGGTTGCCATAGGATAAGATAGCGAATAATCCCCACACTAACAGGATCGGACCATCTAACGGTGGACGGGTGGAATATAGTACTCTCTCCGTTTTAAATCATAAGTCGGTTTAACCTTTTTTTGGTATATATATTNTGCTACGTATCTAAGTATAATAATGTCAAGATACATAGCAAAATGGATGTACCAAAAAAATCAAAACGACTTATAATTTGGAACAGANGAAGTGGTAACTTATTTTATGCGCCTAACCCATGGATGGTGAATCTTGCTTANGCANATTCGCCATTGTATGAATTTACATAAGTAATGAAATTTCAGTTTTAT | |||||||||
gi|166794762|gb|DV730856.1|DV730856 SUS01-058-F03-A-029.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): AGAGCGGGAGAATGGACGCGTCCTTGAATGAATCCTGCAACATCCACAGACATACACAAAGCGACACCAGTTGGCTAGTTTGTCAACTTGATGATGAGCGAGCAATGCATGCGGTTCAGGTTGAGCATCCAAAACAATTCGTGGAGGCATCGCATCGCAGCAGCTAATTGGATTGGATGAGACTATCCGATCGAGTATGTTTATGTTATCTGCCTGCCGGTGACACCAAGTCACCAACGAACTCCTCATAACAGGCATGGAAGTGGAAATATATGAATGAATGAATGAATGAATGCAGTGCAGGAAGCTTCTTCAGGCCTTTCGCTTCGCCGCACGCAGAACCGCACAATCAAACCCTTAGAGCATTTTATTTACTAATACTCTCTCCATTCCAAATTGTAGGACGTCTTATAA | |||||||||
gi|36055377|gb|CA293951.1|CA293951 SCSGLV1008F06.b LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSGLV1008F06 3', mRNA seque ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): TGTTGGCCACTGCAGCCCCTGAATCTGCGATAGAGAAAGTTCGAGAGAATATTTNTTCTATGGTGAGCAGTAGCAAGGATGACATTCTGCGTGCAGCCAGTGTGGAAATCCGGAAACTAGTGNAGTTACCTTGACCNGAGCGGTACGAGGANACACTGGAGGAGCTGAAATATATGTGGGTGAGGCTCCTTATCTATGCTGCCGGTAAGTCACGCCCGGAGGCACATGCTGCGCAACTGGCGAGAGGCACGAGGGAATGATCCGGCCATACCTCCTCGAGCACTCCAAGCCTTCAATCTCTAAGGGATCCAAGGCAGCGCGTAACCAGGCTTGGAGTGGGAGCATACGGATGCCATTGTGTCAAATGCATCGATCTGCATATCCTCGCCTGCTGGCTGTTCCTGCTAGCCTCTGCCACCAATGCGACCCCGGATGTCAGTATTGTCACCGAAAAAGCCACGCGCGTCAGCTGGTGATAAATAGAATTTCTATTCGATTGCTGATGTGAGTTATTGATCATAAGCACTGTAGTGAACAACTGAAAACTTGAGGTCACCCAAAGGTGAACCATTTTAATTTTGCATGTACTTTGGAACTTGTGCTTGTGTATCAAAGCTCAAAAGATATTTCCTCCGTTCCAAATTATAATTCATCTTGGCTTTTCTAGATGT | |||||||||
gi|268777428|gb|CN608955.1|CN608955 SUL01-035F-E08-055.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): CCGAATCTTTTGAGCCTAGTTAGTCCATGGTTGGATAAATTCTGCCAAATAACAACGAAAGTTGCTACAGTAACTTTTCACCCACTTTTCATCAACTGAACACCCCCATACTATGTTCTACTCCCTCCGTTCCAAATTATTAGTCGTTCTGGCTTTTCTAGGTATATTGTTTTTTGCTATGTATCTAGAAAAGCCAAAAAGACTTATAATTTGGAATGGATGGAGTATATATATTACTGCTATGTTCAAACAACGAAAACAGTATGTCTGTTTCCATTTTTCCTTGCAAGGCTTTTACTTCCAAGCAAGTTTGGTGTAGACTAGAGGTGAAACCCAATAGCGTGACCAATCAGCACATTTCCACCAGTTGTCTGGTTTCCCTTAAATCATTGGTACACCTAAAAAATGCATAATAAATGCACCAATGTTCCAAAATTTCTAATATTAGATCAGTTACAAAGTTTCCACAGCAATACAAGGGTGACTCCTTGTTCCCAGCTTAATGCAAATGTTGTCTTACCTTGAACTT | |||||||||
gi|36042283|gb|CA289677.1|CA289677 SCAGFL8007G05.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCAGFL8007G05 5', mRNA seque ATTTGGAACGGAGAGAGTAAT EST sequence (targeted fragment marked with yellow): TACATTAGTTTGTCTGTGATTACAAAAGGAAAAGCACAAAGAGGCACTAGTTGCCTGCCAGGGGTATAGCAGAAGCATCATATCTGAGTGAGAGTCAAATGTACCGGAGAAAGCACTTTGCGATCACTGCACACAAACTATGTAGACACCCCACACACCATCAACTGTGTCCTAAGTGTAGCAACTTCGTGCAAAAGGCAGCATTAAGTTGTCATGCTATTATTGTTTGTTACTCCCTCCATTCCAAATTGTAAGTCGCTTATTTTTGATGGTTCAGGCATGCGCTTTGTACAACAACTGGTGGCCCATGTTAGCAGCTCTCATGTACGTCCTTGTACCAATGCCATGCCTATTTTTTGGTGGTGGATCCACACACTTCTTGACTAGCAGAGAAGGTGGAGGGTGGATGAATGCAGCAAAATTCCTGACTGGTGCATCCGCCATGGGAAGCCTCGCTATTCCAGCAATTCTGAGGCATGCTGGCCTAATCGAGATGGGGGCTATGTTCATCGAGTTCACGTCCTTCTTCATCCTTGTATGCACAGTGCTGTGCTTCCATAGGGCTACCCTGGATGAAGACTGGTAAATGCACATGCACGGACGACCCCCTGCACTTGAAGAACAGCCAATCTGTGGCCGCTTCTCACCATGCTAAGAAAAAATCCTGTTGGAAGCTAACATGGATCTGTAGAAAGAAGCATAT | |||||||||