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mature miRNA: ATTTTCGGCAACATGATATTC
species: Panicum virgatum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|198239865|gb|FL948381.1|FL948381 CCGP15656.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP15656 3', mRNA s 

ATTTTCGGCAACATGATATTC
|||| |||||||||||.||.
TAAACGCCGTTGTACTGTAGA

EST sequence (targeted fragment marked with yellow):
TGTTTCCATTTATGCATCGCTTGAATCCTTTCACATCTGCAAGAAACTCTTTGTCACAGGCACACGACGCACTTTAATATTGAAATATTCAGCAGCCTTGTCATATGCAGAATGTGCTGATTCAGCAATTATCATTTCAGGCTTTGTAATTCCTTTCTTTGATCGCATATAGTCACGCGATGTTTTGACTGCTAATAATATGCTTTCAGTTCCACCAGATGTCATGTTGCCGCAAATCTGTCCACCGGATGATTCTTCTTTGCTGCCAAGCAAAGCAGCTGTCATTGCAACTACTTCAGCTTCCATGTGTGCCACACTCTTGAATACATCTTGATGCAGCGGATTAGTGTGTGAAAACATAGAGTAAGCTTTGTTTATCAATTCAAAATGGCCCTCAGACTCACTTCCAGCGATATATACTGTGCCAGAGCACTTTCCCTGCCAGTCTACATCTTTGGCCTTCAATGTTTCAAGATCCTTTATCACTTCCTCACCAAGGCCAATGGTTGGCAACTCAGCTCGCCGGTTGTTCTTGGACGAGGTCCCACCAGATTGCATCTTGTCAACAACCTTCTTCTTCTCCGCCGCGATGTAGCCGGAGACTCCCGGCAGCAACTTGACGGCGGCGATGGCGATGGCGACGAGGCCCCGGTCGGCGACGGCGCTGGCGGCGGCGTGGACGAGGCGCGCGACGAGGAGCGCGAGGAGCGGCGCGGCGACGAGCGCCAGCGGCTCGCAGCGCGCGAGGCGGCCGTT


gi|198357118|gb|GD024251.1|GD024251 CCHZ11597.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum 

ATTTTCGGCAACATGATATTC
||||||.||||  ||| ||||
TAAAAGTCGTTAGACTTTAAG

EST sequence (targeted fragment marked with yellow):
ATTTCGTCTCTGAATTTCAGATTGCTGAAAATTCTTAAAATAGCTACCGGACATCATTGCACTGTGCAGGCAGAAAAGTCTGATCAAATCGGTGCATTTCAGCAATATTCACATGGTGGCGGCATACATATCTAAATACTTACTCTTGTACAAATCAGAGAGTACCCCATGGCCTCAAATAGGGCACAAATAAA


gi|198157185|gb|FL868216.1|FL868216 CCGI10776.g1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI1 

ATTTTCGGCAACATGATATTC
|||| |||||||||||.||.
TAAACGCCGTTGTACTGTAGA

EST sequence (targeted fragment marked with yellow):
CAGATCCAACCATCATTATGGTGTTTCCATTTATGCATCGCTTGAATCCTTTCACATCTGCAAGAAACTCTTTGTTCACAGGCACACGACGCACTTTAATATTGAAATATTCAGCAGCCTTGTCATATGCAGAATGTGCTGATTCAGCAATTATCATTTCAGGCTTTGTAATTCCTTTCTTTGATCGCATATAGTCACGCGATGTTTTGACTGCTAATAATATGCTTTCAGTTCCACCAGATGTCATGTTGCCGCAAATTTGTCCACCGGATGATTTTTCTTTGCTGCCAAGCAAAGCAGCTGTCATTGCAACTACTTCAGCTTCCATGTGTGCCACACTCTTGAATACATCTTGATGCAGCGGATTAGTGTGTGAAAACATAGAGTAAGCTTTGTTTATCAATTCAAAATGGCCCTCAGACTCACTTCCAGCGATATATACTGTGCCAGAGCACTTTCCCTGCCAGTCTACATCTTTGGCCTTCAATGTTTCAAGATCCTTTATCACTTCCTCACCAAGGCCAATGGTTGGCAACTCAGCTCGCCGGTTGTTCTTGGACGAGGTCCCACCAGATTGCATCTTGTCAACAACCTTCTTCTTCTCCGCCGCGATGTAGCCGGAGACTCCCGGCAGCAACTTGACGGCGGCGATGGCGATGGCGACGAGGCCCCGGTCGGCGACGGCGCTGGCGGCGGCGTGGACGAGGCGCGCGACGAGGAGCGCGAGGAGCGGCGCGGCGACGAGCGCCAGCGGCTCGCAGCGCGCGAGGCGGCCGTT


gi|169695701|gb|FE626707.1|FE626707 CBYY6861.b1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY6861 5', mRNA 

ATTTTCGGCAACATGATATTC
||||||||||| || |||.||
TAAAAGCCGTT-TAGTATGAG

EST sequence (targeted fragment marked with yellow):
AATGGTTCAGAAGAAGAAAAAACAGCTGCTGCCAAGATTCTTTGCGGCGCGTCGCTTGTCCGTGGCTGGAACATTCAGGAACATGTAGTTGGTATGGTGGTCAAGCTATTATCAGCTTCACTGCCCTCAGATTCCTCAACCTCAACACCTGGGAGCCACTACCTTGCTCAGATGTCTACATTAAATGAAATCTTACTCGGTGTGTCTTATGGTGATGCCATCCATATTCTTTCATTGTATGGAATGGTTCCAGATGTTGCTGCAGCTTTGATGCCACTATGCGAAGGTTTTGGGTCAATAGCACCCCCACCTAACCACAAGTCCACCATCCTTGGGGAAGCATCTGTTTATTCGGTCTTCTCTTGTGCATTTCTTTGTCTCCTTCGCTTGTGGAAGTTTTATAAGCCTCCTCAAGAGTACTGTCTTGCTGGTCGTGGAGGCTCAGTAAGAATGGAACTTACTCTGGACTATCTGTTGTTGATGCGCAATAACCGCATTGACTTCACAAAATCGTCTGCCCCTAGTAGGGATTCTTACAATAATATGGGCTCAGTCAACGAGGTCCCTGCTCAACCGGTTTATATTGATTCTTTCCCCAAGTTAAGGGCTTGGTATTTCCAGAATCAAGCTTGCATAGCATCTACCCTTTCGGGTCTTTGCAACAAAAACCCTGTCCATCAAGTTGCAAACAAAATTTTGAGTATGATTTGCCGAAAATGAATAAAGTTGGGGTATCATCTGGTA