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mature miRNA: CAAAAGTTGTTGGGTTTGACC
species: Helianthus ciliaris
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125419618|gb|EL431590.1|EL431590 CHCS6056.b1_P02.ab1 CHC(LMS) Texas blueweed Helianthus ciliaris cDNA clone CHCS6056, mRNA se

CAAAAGTTGTTGGGTTTGACC
|||| ||||||.| |||.|||
GTTTACAACAATCAAAATTGG

EST sequence (targeted fragment marked with yellow):
GGGCATGGGAGGAAATAAAGACTTGTCACATGTTTCTTGACGTACCATACCCTCTCGTCGTCATTTCAAGATATGGATATTGAAGACCAAAACGGATTTACAAAGATGAAGAGAAAGGAAGGAGAAGGAATCAGTCTCCCACCATTTGGATTGGTTACTTACAAGATGCAAGGCGACATTTGGACCGCAAATAGGAATACAAATGACCAAGAGAAGCTAGTTTCACTTGCGAGCGTGGCTGATTCCTGGTTGAGACAATTAGGCGTCCAACATCATGATTTTAACCACTTTGTGGGGAATCGTCGTGGTTAAAACTAACAACATTTGACATTGAAAGAGATATGTTCAAACCCGTACCAGAGATTCGACTTATCATCGTCACATCCCTTGTGGGCTTTTCGACTTTTTTACACATGGAGAGAGGCTGTTATGTTTAGATGGAACAGGGTTTTGCCATTGTTGAGCTTGTGTGTTAGACTTTCTTTTTCCTAGTTCTAGTCTTGCTTATTTGGCCAACCTTATCCTTTGGGTTTATTTGCAAAATGTTTTAGGTTTTGAAGAACCTTGAATGGAGAAAGGGGGAATTGTGTACATTGAGGAATCTAATGAATGGGAGAGAGACACTTATGAGAAAAAA